Wall clock time and date at job start Mon Mar 30 2020 23:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.47078 * 296.39075 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.33997 * 124.91602 * 89.72089 * 14 13 11 16 16 C 1.46785 * 106.18301 * 179.90043 * 15 14 13 17 17 C 1.39409 * 134.37315 * 180.11623 * 16 15 14 18 18 C 1.36741 * 119.71743 * 180.26782 * 17 16 15 19 19 C 1.38739 * 120.41706 * 0.02562 * 18 17 16 20 20 C 1.37853 * 120.68867 * 359.97438 * 19 18 17 21 21 C 1.38943 * 119.81340 * 0.02562 * 20 19 18 22 22 O 1.34450 * 124.92830 * 270.02999 * 14 13 11 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 29 29 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 30 30 H 1.08000 * 126.91178 * 0.02707 * 15 14 13 31 31 H 1.07997 * 120.13855 * 0.28927 * 17 16 15 32 32 H 1.07993 * 119.78998 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.65595 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.09189 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2331 0.0002 12 8 0.5864 -5.3452 1.2007 13 6 2.6651 -6.4701 -0.0007 14 6 2.0636 -7.8519 0.0005 15 6 1.7515 -8.5534 -1.0976 16 6 1.2014 -9.8297 -0.6252 17 6 0.7046 -10.9699 -1.2548 18 6 0.2495 -12.0164 -0.5014 19 6 0.2788 -11.9496 0.8840 20 6 0.7665 -10.8304 1.5243 21 6 1.2338 -9.7559 0.7774 22 8 1.7570 -8.5571 1.1034 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 3.2807 -6.3422 -0.8910 29 1 3.2820 -6.3421 0.8890 30 1 1.8806 -8.2432 -2.1240 31 1 0.6796 -11.0266 -2.3330 32 1 -0.1360 -12.9001 -0.9880 33 1 -0.0841 -12.7831 1.4671 34 1 0.7853 -10.7888 2.6033 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358232547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:32 Heat of formation + Delta-G solvation = -17.867763 kcal Electronic energy + Delta-G solvation = -17945.207072 eV Core-core repulsion = 14936.015040 eV Total energy + Delta-G solvation = -3009.192032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51694 -38.02580 -35.27553 -33.71922 -33.39853 -31.29850 -30.92959 -30.53538 -27.19130 -25.32047 -23.08687 -22.04846 -21.44379 -20.89071 -17.46331 -17.32834 -16.87358 -16.67148 -16.12199 -15.65655 -14.64208 -14.59206 -14.45540 -14.25311 -14.03628 -13.64403 -13.24754 -13.12633 -12.59936 -12.38861 -12.32354 -12.04632 -11.71923 -11.35670 -11.05917 -10.99171 -10.79872 -10.45057 -10.18308 -10.07951 -9.56497 -9.24635 -8.73436 -8.44251 -8.22132 -7.75487 -6.07206 -4.11933 0.72510 1.22443 1.67501 2.43295 2.63527 3.03919 3.28895 3.33988 3.35886 3.58082 4.04439 4.32396 4.40834 4.54057 4.76364 4.95387 4.99976 5.06264 5.12376 5.27729 5.30293 5.51305 5.60102 5.72785 5.87913 6.06308 6.09525 6.10875 6.27171 6.32961 6.53275 6.73848 7.10888 7.44788 7.56140 7.87302 8.27843 8.92481 9.52389 11.03391 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.056188 B = 0.002982 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.211307 B = 9388.335181 C = 9445.582366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.418 4.418 11 S 1.235 4.765 12 O -0.836 6.836 13 C -0.395 4.395 14 C 0.071 3.929 15 C -0.210 4.210 16 C -0.126 4.126 17 C -0.072 4.072 18 C -0.139 4.139 19 C -0.099 4.099 20 C -0.106 4.106 21 C 0.051 3.949 22 O -0.190 6.190 23 H 0.264 0.736 24 H 0.030 0.970 25 H 0.023 0.977 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.146 0.854 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -22.385 -5.580 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.558 4.558 11 S 1.434 4.566 12 O -0.831 6.831 13 C -0.526 4.526 14 C 0.023 3.977 15 C -0.231 4.231 16 C -0.127 4.127 17 C -0.090 4.090 18 C -0.157 4.157 19 C -0.117 4.117 20 C -0.124 4.124 21 C 0.003 3.997 22 O -0.092 6.092 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.122 0.878 30 H 0.184 0.816 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.947 -22.365 -5.264 23.058 hybrid contribution 1.884 1.222 1.789 2.871 sum 3.831 -21.143 -3.475 21.766 Atomic orbital electron populations 1.69948 1.06062 1.27063 1.50020 1.25048 0.94925 0.99372 0.95104 0.86587 0.79535 0.82829 0.78643 1.20057 1.21145 1.20294 1.21098 0.92989 0.90352 1.51593 0.92467 1.18798 0.92959 0.90067 0.98226 1.27646 1.09741 1.12051 1.06316 1.70895 0.86508 0.86764 1.12454 1.93126 1.55610 1.83756 1.50616 1.26737 1.15857 1.00734 1.09235 1.21358 0.99338 0.93150 0.83875 1.22225 1.08127 0.93343 0.99397 1.19970 1.03710 0.96082 0.92909 1.20284 0.97296 0.91436 1.00028 1.20759 1.01990 0.99069 0.93849 1.20893 0.99184 0.96932 0.94727 1.19978 1.01797 0.90794 0.99877 1.19678 0.99940 0.86272 0.93817 1.84006 1.66291 1.24724 1.34184 0.92661 0.95214 0.95851 0.87275 0.90632 0.83559 0.87804 0.81561 0.85385 0.85441 0.84927 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 10 C -0.42 -7.82 5.86 37.16 0.22 -7.61 16 11 S 1.23 19.56 13.14 -107.50 -1.41 18.14 16 12 O -0.84 -19.14 18.14 -35.23 -0.64 -19.78 16 13 C -0.39 -4.93 6.42 36.01 0.23 -4.70 16 14 C 0.07 1.01 6.49 -35.80 -0.23 0.78 16 15 C -0.21 -2.51 11.01 -37.62 -0.41 -2.92 16 16 C -0.13 -1.61 6.40 -105.16 -0.67 -2.29 16 17 C -0.07 -0.73 10.05 -39.69 -0.40 -1.13 16 18 C -0.14 -1.22 9.98 -39.94 -0.40 -1.62 16 19 C -0.10 -0.91 10.01 -39.54 -0.40 -1.31 16 20 C -0.11 -1.24 10.07 -39.46 -0.40 -1.64 16 21 C 0.05 0.73 7.42 -38.47 -0.29 0.45 16 22 O -0.19 -3.17 10.58 3.91 0.04 -3.13 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.11 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.07 1.48 8.14 -51.92 -0.42 1.05 16 28 H 0.15 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.10 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -37.50 314.45 -9.04 -46.54 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.19 Total: -2.58 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: -3.30 Total: -34.41 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.60 Total: -22.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 19.56 SS G_CDS: -1.41 Total: 18.14 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.50 -9.04 -46.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358232547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.672 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds