Wall clock time and date at job start Mon Mar 30 2020 23:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.47078 * 296.39075 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.33997 * 124.91602 * 89.72089 * 14 13 11 16 16 C 1.46785 * 106.18301 * 179.90043 * 15 14 13 17 17 C 1.39409 * 134.37315 * 180.11623 * 16 15 14 18 18 C 1.36741 * 119.71743 * 180.26782 * 17 16 15 19 19 C 1.38739 * 120.41706 * 0.02562 * 18 17 16 20 20 C 1.37853 * 120.68867 * 359.97438 * 19 18 17 21 21 C 1.38943 * 119.81340 * 0.02562 * 20 19 18 22 22 O 1.34450 * 124.92830 * 270.02999 * 14 13 11 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 29 29 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 30 30 H 1.08000 * 126.91178 * 0.02707 * 15 14 13 31 31 H 1.07997 * 120.13855 * 0.28927 * 17 16 15 32 32 H 1.07993 * 119.78998 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.65595 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.09189 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2331 0.0002 12 8 0.5864 -5.3452 1.2007 13 6 2.6651 -6.4701 -0.0007 14 6 2.0636 -7.8519 0.0005 15 6 1.7515 -8.5534 -1.0976 16 6 1.2014 -9.8297 -0.6252 17 6 0.7046 -10.9699 -1.2548 18 6 0.2495 -12.0164 -0.5014 19 6 0.2788 -11.9496 0.8840 20 6 0.7665 -10.8304 1.5243 21 6 1.2338 -9.7559 0.7774 22 8 1.7570 -8.5571 1.1034 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 3.2807 -6.3422 -0.8910 29 1 3.2820 -6.3421 0.8890 30 1 1.8806 -8.2432 -2.1240 31 1 0.6796 -11.0266 -2.3330 32 1 -0.1360 -12.9001 -0.9880 33 1 -0.0841 -12.7831 1.4671 34 1 0.7853 -10.7888 2.6033 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358232547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:27 Heat of formation + Delta-G solvation = -43.774234 kcal Electronic energy + Delta-G solvation = -17946.330461 eV Core-core repulsion = 14936.015040 eV Total energy + Delta-G solvation = -3010.315420 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45936 -38.83210 -36.87790 -35.73891 -34.36169 -32.88749 -32.19841 -31.34547 -28.16747 -27.25602 -23.99302 -23.33174 -22.69482 -22.00852 -18.82080 -18.47982 -18.32868 -17.79824 -17.34891 -16.64203 -16.41467 -16.00572 -15.87502 -15.36305 -15.07306 -14.67149 -14.50569 -14.33251 -13.99682 -13.66108 -13.42247 -13.22362 -13.04575 -12.81593 -12.65018 -12.63010 -12.03811 -11.97293 -11.85239 -11.58104 -11.31548 -10.78643 -10.59531 -9.62569 -9.38174 -8.93712 -8.21790 -6.35311 -0.18019 0.37610 0.51804 1.39770 1.43200 1.45160 1.51379 1.69810 1.79397 2.39963 2.77342 2.80250 3.10551 3.34180 3.72921 3.96857 4.08127 4.17075 4.21108 4.28201 4.41651 4.47031 4.52279 4.67965 4.78501 4.95608 5.01254 5.24762 5.35984 5.41957 5.49822 5.51258 5.51747 5.76315 5.78149 6.16230 6.19869 6.79864 7.34301 8.89190 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.056188 B = 0.002982 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.211307 B = 9388.335181 C = 9445.582366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.034 3.966 10 C -0.417 4.417 11 S 1.285 4.715 12 O -0.918 6.918 13 C -0.372 4.372 14 C 0.023 3.977 15 C -0.182 4.182 16 C -0.152 4.152 17 C -0.072 4.072 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.135 4.135 21 C 0.011 3.989 22 O -0.231 6.231 23 H 0.265 0.735 24 H 0.027 0.973 25 H -0.028 1.028 26 H 0.152 0.848 27 H 0.063 0.937 28 H 0.202 0.798 29 H 0.095 0.905 30 H 0.209 0.791 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -24.271 -8.168 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.004 4.004 10 C -0.555 4.555 11 S 1.488 4.512 12 O -0.914 6.914 13 C -0.507 4.507 14 C -0.024 4.024 15 C -0.203 4.203 16 C -0.153 4.153 17 C -0.090 4.090 18 C -0.154 4.154 19 C -0.105 4.105 20 C -0.153 4.153 21 C -0.036 4.036 22 O -0.135 6.135 23 H 0.074 0.926 24 H 0.045 0.955 25 H -0.010 1.010 26 H 0.170 0.830 27 H 0.082 0.918 28 H 0.219 0.781 29 H 0.114 0.886 30 H 0.226 0.774 31 H 0.177 0.823 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.396 -24.211 -7.854 25.679 hybrid contribution 1.421 1.501 2.565 3.294 sum 4.817 -22.710 -5.289 23.810 Atomic orbital electron populations 1.70098 1.07941 1.28100 1.51273 1.26065 0.95818 1.03636 0.94625 0.85442 0.78204 0.77740 0.79314 1.18012 1.20951 1.19919 1.21630 0.93779 0.91657 1.51006 0.91405 1.18663 0.93720 0.92402 0.95619 1.27539 1.08631 1.11602 1.07759 1.69846 0.86259 0.85346 1.09795 1.93000 1.60167 1.85000 1.53237 1.26541 1.13942 0.98547 1.11637 1.21674 1.02384 0.94103 0.84260 1.22801 1.04774 0.92204 1.00510 1.20383 1.04992 0.97562 0.92362 1.20742 0.95975 0.90492 1.01768 1.21272 1.00591 0.99887 0.93631 1.21376 0.97029 0.96532 0.95612 1.20336 1.03129 0.91443 1.00399 1.20293 1.01266 0.86393 0.95604 1.83933 1.67493 1.26071 1.36002 0.92591 0.95498 1.00973 0.83032 0.91847 0.78077 0.88636 0.77418 0.82326 0.81737 0.81704 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.79 4.98 29.85 0.15 1.94 16 10 C -0.42 -15.59 5.86 71.98 0.42 -15.17 16 11 S 1.28 41.19 13.14 -56.49 -0.74 40.45 16 12 O -0.92 -44.77 18.14 -148.98 -2.70 -47.47 16 13 C -0.37 -8.73 6.42 71.24 0.46 -8.27 16 14 C 0.02 0.65 6.49 24.72 0.16 0.81 16 15 C -0.18 -3.93 11.01 23.54 0.26 -3.67 16 16 C -0.15 -3.67 6.40 -20.21 -0.13 -3.80 16 17 C -0.07 -1.21 10.05 22.20 0.22 -0.99 16 18 C -0.14 -1.90 9.98 22.04 0.22 -1.68 16 19 C -0.09 -1.41 10.01 22.30 0.22 -1.19 16 20 C -0.13 -3.17 10.07 22.35 0.23 -2.95 16 21 C 0.01 0.34 7.42 22.99 0.17 0.51 16 22 O -0.23 -8.06 10.58 -8.91 -0.09 -8.15 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 26 H 0.15 4.28 8.14 -2.39 -0.02 4.26 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.20 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -88.63 314.45 2.94 -85.69 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.09 Total: 5.11 kcal Atomic # 6 Polarization: -67.53 SS G_CDS: 3.08 Total: -64.46 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -2.80 Total: -55.62 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 41.19 SS G_CDS: -0.74 Total: 40.45 kcal Total: -88.63 2.94 -85.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358232547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.914 kcal (2) G-P(sol) polarization free energy of solvation -88.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds