Wall clock time and date at job start Tue Mar 31 2020 00:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39642 * 120.11443 * 242.24660 * 3 2 1 5 5 C 1.38185 * 119.93421 * 180.02562 * 4 3 2 6 6 F 1.35095 * 119.92282 * 179.97438 * 5 4 3 7 7 C 1.38502 * 120.16162 * 359.93410 * 5 4 3 8 8 C 1.38775 * 120.22711 * 0.02810 * 7 5 4 9 9 O 1.35905 * 119.96862 * 179.97438 * 8 7 5 10 10 C 1.42897 * 117.00015 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99962 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00379 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00591 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47345 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99959 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99881 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00236 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47000 * 90.00145 * 19 17 15 21 21 H 1.48496 * 109.47536 * 209.99954 * 19 17 15 22 22 H 1.48498 * 109.47203 * 330.00428 * 19 17 15 23 23 C 1.38495 * 120.06529 * 0.02562 * 8 7 5 24 24 H 1.08003 * 120.03069 * 0.05171 * 4 3 2 25 25 H 1.07997 * 119.89114 * 180.02562 * 7 5 4 26 26 H 1.08997 * 109.47017 * 299.99636 * 10 9 8 27 27 H 1.08997 * 109.47594 * 59.99819 * 10 9 8 28 28 H 0.97006 * 119.99397 * 359.97438 * 13 11 10 29 29 H 1.08997 * 109.46674 * 299.99591 * 14 13 11 30 30 H 1.08997 * 109.46977 * 59.99187 * 14 13 11 31 31 H 0.97002 * 119.99475 * 179.97438 * 18 17 15 32 32 H 1.08003 * 120.08301 * 179.70934 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2683 0.5634 1.0690 5 6 4.6501 0.5625 1.0649 6 9 5.3275 1.1075 2.0989 7 6 5.3425 0.0034 0.0036 8 6 4.6533 -0.5584 -1.0618 9 8 5.3380 -1.1051 -2.1007 10 6 6.7646 -1.0669 -2.0293 11 6 7.3468 -1.7137 -3.2596 12 8 6.6122 -2.1636 -4.1134 13 7 8.6837 -1.7932 -3.4108 14 6 9.2496 -2.4215 -4.6071 15 6 10.7541 -2.3813 -4.5316 16 1 11.2402 -1.9323 -3.6782 17 6 11.5101 -2.9178 -5.5522 18 7 12.8232 -2.8832 -5.4861 19 14 10.6695 -3.6951 -7.0281 20 1 10.4458 -2.6621 -8.0713 21 1 11.5298 -4.7741 -7.5765 22 1 9.3644 -4.2671 -6.6101 23 6 3.2683 -0.5616 -1.0680 24 1 2.7305 0.9987 1.8983 25 1 6.4225 0.0047 0.0051 26 1 7.0979 -0.0307 -1.9718 27 1 7.0986 -1.6056 -1.1426 28 1 9.2712 -1.4337 -2.7277 29 1 8.9160 -3.4575 -4.6657 30 1 8.9160 -1.8817 -5.4933 31 1 13.3550 -3.2610 -6.2040 32 1 2.7316 -0.9946 -1.8992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386665138.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:40 Heat of formation + Delta-G solvation = -82.396499 kcal Electronic energy + Delta-G solvation = -19521.122984 eV Core-core repulsion = 15975.212351 eV Total energy + Delta-G solvation = -3545.910633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.97132 -41.53105 -40.37117 -38.83242 -37.25304 -36.17063 -34.43105 -32.22636 -31.80919 -30.56967 -28.57213 -25.38083 -24.04193 -23.68608 -21.72109 -20.65756 -19.37842 -18.33624 -18.14255 -17.49147 -17.35200 -17.16433 -17.01059 -16.63970 -16.61878 -15.97102 -15.75541 -15.15328 -15.02561 -14.75471 -14.47403 -14.36922 -14.17452 -14.03562 -13.47066 -13.15054 -13.07267 -12.78650 -12.70559 -12.68301 -11.98611 -11.92685 -11.63901 -10.90759 -10.89039 -10.06953 -9.98923 -9.45684 -8.38293 -6.45102 -0.51412 0.07232 1.33600 1.35073 1.38834 1.49097 1.60405 1.63480 1.71269 2.29557 2.49373 2.62091 2.86004 2.97613 3.14472 3.66902 3.80991 3.85155 3.94832 4.03528 4.12319 4.16181 4.65726 4.79393 4.84375 4.96805 5.02300 5.03833 5.26847 5.41119 5.45931 6.05423 6.16234 6.29256 6.56179 6.78396 7.16308 7.35126 8.76030 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.032481 B = 0.002966 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.833655 B = 9438.238264 C =10279.626790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.282 3.718 3 C 0.041 3.959 4 C -0.132 4.132 5 C 0.141 3.859 6 F -0.130 7.130 7 C -0.209 4.209 8 C 0.153 3.847 9 O -0.305 6.305 10 C 0.045 3.955 11 C 0.500 3.500 12 O -0.585 6.585 13 N -0.697 5.697 14 C 0.231 3.769 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.027 3.973 18 N -0.930 5.930 19 Si 0.934 3.066 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.111 4.111 24 H 0.167 0.833 25 H 0.173 0.827 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.415 0.585 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.272 0.728 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.251 7.971 15.138 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.034 4.034 3 C 0.038 3.962 4 C -0.154 4.154 5 C 0.121 3.879 6 F -0.109 7.109 7 C -0.229 4.229 8 C 0.107 3.893 9 O -0.217 6.217 10 C -0.032 4.032 11 C 0.286 3.714 12 O -0.465 6.465 13 N -0.348 5.348 14 C 0.108 3.892 15 C -0.582 4.582 16 H 0.083 0.917 17 C -0.174 4.174 18 N -0.569 5.569 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.132 4.132 24 H 0.184 0.816 25 H 0.190 0.810 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.251 0.749 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.389 7.525 14.297 23.736 hybrid contribution 1.093 -0.192 -0.395 1.178 sum -16.296 7.334 13.902 22.641 Atomic orbital electron populations 1.81321 1.13027 1.09175 1.08453 1.25422 0.92241 0.92866 0.92820 1.15073 0.83534 1.01986 0.95657 1.21130 0.92291 1.02182 0.99765 1.16978 0.89327 0.96341 0.85258 1.91567 1.80029 1.83184 1.56086 1.21650 1.03228 1.03948 0.94036 1.18432 0.91144 0.93014 0.86694 1.86190 1.19541 1.75121 1.40895 1.22723 0.78785 1.04668 0.97021 1.20799 0.82530 0.79731 0.88295 1.90701 1.60394 1.49811 1.45628 1.45827 1.05730 1.59324 1.23940 1.19136 0.92612 0.92871 0.84632 1.21277 0.89651 1.39957 1.07340 0.91708 1.25567 0.95215 0.95692 1.00893 1.69978 1.05809 1.46340 1.34795 0.85909 0.79199 0.79162 0.79940 1.19114 1.20133 1.18353 1.20487 0.91199 1.02012 0.99542 0.81558 0.81010 0.84921 0.84925 0.74859 0.96737 0.96852 0.91902 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.70 18.54 19.00 0.35 -9.34 16 2 C 0.28 4.65 15.33 88.33 1.35 6.01 16 3 C 0.04 0.52 5.73 -21.38 -0.12 0.40 16 4 C -0.13 -1.34 9.73 22.60 0.22 -1.12 16 5 C 0.14 1.59 7.29 22.32 0.16 1.75 16 6 F -0.13 -1.67 17.26 44.97 0.78 -0.90 16 7 C -0.21 -2.39 9.01 22.46 0.20 -2.19 16 8 C 0.15 2.42 6.68 22.46 0.15 2.57 16 9 O -0.31 -6.74 9.67 -73.45 -0.71 -7.45 16 10 C 0.05 0.84 5.22 71.24 0.37 1.22 16 11 C 0.50 16.12 7.91 87.66 0.69 16.81 16 12 O -0.58 -25.04 16.50 16.00 0.26 -24.78 16 13 N -0.70 -24.04 5.55 -466.80 -2.59 -26.63 16 14 C 0.23 10.53 4.50 85.63 0.38 10.91 16 15 C -0.54 -28.25 9.83 25.60 0.25 -27.99 16 16 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 17 C 0.03 1.45 5.47 84.65 0.46 1.92 16 18 N -0.93 -53.75 13.96 21.45 0.30 -53.45 16 19 Si 0.93 42.50 27.47 68.60 1.88 44.39 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 23 C -0.11 -1.63 9.69 22.65 0.22 -1.41 16 24 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 25 H 0.17 1.21 6.28 -2.91 -0.02 1.19 16 26 H 0.13 1.52 7.65 -2.39 -0.02 1.50 16 27 H 0.13 1.53 7.66 -2.39 -0.02 1.51 16 28 H 0.41 11.54 8.32 -92.70 -0.77 10.77 16 29 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 30 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -70.98 303.00 4.99 -65.99 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 0.36 Total: 3.31 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.35 Total: 8.86 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -1.94 Total: -89.43 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.45 Total: -32.23 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.78 Total: -0.90 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.39 kcal Total: -70.98 4.99 -65.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386665138.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.404 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds