Wall clock time and date at job start Mon Mar 30 2020 23:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99751 * 2 1 4 4 C 1.50706 * 109.47128 * 85.00265 * 3 2 1 5 5 H 1.08005 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47483 * 269.99808 * 8 6 4 10 10 H 1.48499 * 109.47134 * 30.00322 * 8 6 4 11 11 H 1.48507 * 109.46904 * 150.00145 * 8 6 4 12 12 S 1.65596 * 119.99966 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.40729 * 23.53774 * 12 2 1 14 14 O 1.42103 * 106.40236 * 156.46090 * 12 2 1 15 15 N 1.65598 * 107.21978 * 269.99786 * 12 2 1 16 16 C 1.47072 * 136.05849 * 269.63783 * 15 12 2 17 17 C 1.53237 * 88.08158 * 207.20007 * 16 15 12 18 18 C 1.47065 * 136.06112 * 89.99717 * 15 12 2 19 19 H 1.08997 * 113.47018 * 267.69143 * 18 15 12 20 20 C 1.50707 * 113.46488 * 38.06697 * 18 15 12 21 21 O 1.20830 * 119.99689 * 0.02562 * 20 18 15 22 22 O 1.34220 * 120.00081 * 179.97438 * 20 18 15 23 23 H 1.09004 * 109.47075 * 89.99884 * 1 2 3 24 24 H 1.09003 * 109.46734 * 209.99399 * 1 2 3 25 25 H 1.08994 * 109.47124 * 329.99663 * 1 2 3 26 26 H 1.09001 * 109.47786 * 325.00538 * 3 2 1 27 27 H 1.09006 * 109.47401 * 205.00123 * 3 2 1 28 28 H 0.97001 * 119.99646 * 359.97438 * 7 6 4 29 29 H 1.09004 * 113.46493 * 321.93040 * 16 15 12 30 30 H 1.08997 * 113.47348 * 92.36449 * 16 15 12 31 31 H 1.09001 * 114.32312 * 220.46557 * 17 16 15 32 32 H 1.08992 * 114.20022 * 87.72649 * 17 16 15 33 33 H 0.96701 * 117.00309 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7656 1.4155 5 1 1.9282 1.1937 2.2332 6 6 3.0005 2.9503 1.6665 7 7 3.5033 3.6469 0.6707 8 14 3.1783 3.5665 3.4210 9 1 2.0180 4.4278 3.7632 10 1 3.2265 2.4088 4.3497 11 1 4.4320 4.3530 3.5447 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5454 14 8 3.5760 -1.1565 -0.5449 15 7 2.5382 -1.8593 1.5809 16 6 3.5818 -1.6263 2.5906 17 6 3.1635 -2.9437 3.2523 18 6 1.8112 -2.6415 2.5921 19 1 1.1488 -2.0387 3.2134 20 6 1.1310 -3.8635 2.0307 21 8 1.2177 -4.1153 0.8521 22 8 0.4299 -4.6727 2.8400 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6501 2.0044 -0.5893 27 1 3.1858 1.1178 -0.4343 28 1 3.4106 3.3271 -0.2403 29 1 4.5926 -1.6488 2.1832 30 1 3.3968 -0.7503 3.2121 31 1 3.1458 -2.9131 4.3417 32 1 3.6685 -3.8237 2.8542 33 1 0.0110 -5.4441 2.4341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393774365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:35 Heat of formation + Delta-G solvation = -118.276497 kcal Electronic energy + Delta-G solvation = -21199.638339 eV Core-core repulsion = 17775.242995 eV Total energy + Delta-G solvation = -3424.395344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63481 -38.53722 -36.57748 -35.91003 -35.63891 -35.12116 -32.67176 -28.67210 -27.57981 -27.41899 -24.84622 -22.46820 -22.29188 -21.12941 -18.42637 -18.12653 -17.63025 -17.15161 -16.74263 -16.35516 -15.65637 -15.25554 -14.43267 -14.20800 -13.82623 -13.66631 -13.36291 -13.13712 -12.70366 -12.39927 -12.28799 -11.99614 -11.79967 -11.66929 -11.38123 -11.33299 -11.23410 -11.07248 -10.85040 -10.60813 -10.53577 -10.21106 -10.09705 -9.44942 -8.99829 -8.47719 -7.95878 -6.47887 -4.22575 1.16314 2.22365 2.87418 3.33500 3.36351 3.38665 3.52632 4.17658 4.20621 4.42937 4.60912 4.82867 4.97410 5.18096 5.26692 5.50288 5.51232 5.56857 5.81433 5.98397 6.00741 6.12206 6.18472 6.40967 6.53660 6.55616 6.99397 7.20665 7.46686 7.93032 7.95276 8.32676 8.69489 9.49822 10.89469 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.007401 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.913258 B = 3782.302422 C = 4358.810271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.995 5.995 3 C 0.232 3.768 4 C -0.619 4.619 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.905 5.905 8 Si 1.072 2.928 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.283 1.283 12 S 2.797 3.203 13 O -0.958 6.958 14 O -0.974 6.974 15 N -1.022 6.022 16 C 0.131 3.869 17 C -0.134 4.134 18 C 0.163 3.837 19 H 0.127 0.873 20 C 0.446 3.554 21 O -0.458 6.458 22 O -0.519 6.519 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.271 0.729 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -12.751 7.840 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.836 5.836 3 C 0.110 3.890 4 C -0.658 4.658 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.541 5.541 8 Si 0.900 3.100 9 H -0.215 1.215 10 H -0.213 1.213 11 H -0.209 1.209 12 S 2.806 3.194 13 O -0.942 6.942 14 O -0.958 6.958 15 N -0.860 5.860 16 C 0.006 3.994 17 C -0.174 4.174 18 C 0.054 3.946 19 H 0.144 0.856 20 C 0.284 3.716 21 O -0.341 6.341 22 O -0.331 6.331 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.354 -11.640 7.535 14.266 hybrid contribution -1.292 -1.320 -0.949 2.077 sum -4.646 -12.960 6.585 15.261 Atomic orbital electron populations 1.21177 0.80106 1.01863 1.00634 1.57694 1.14202 1.23414 1.88333 1.19275 0.91615 0.79947 0.98196 1.22358 1.40783 1.10153 0.92533 0.92558 1.25823 0.93159 0.93596 1.05870 1.70751 1.42581 1.40029 1.00713 0.83509 0.76924 0.75796 0.73794 1.21476 1.21333 1.20854 1.01654 0.73408 0.72267 0.72031 1.93669 1.66466 1.58679 1.75356 1.93565 1.41439 1.85484 1.75357 1.60900 1.32775 1.64945 1.27377 1.22376 0.92477 0.96888 0.87688 1.23476 0.93034 0.99590 1.01279 1.21623 0.95679 0.88191 0.89140 0.85579 1.23790 0.77164 0.85331 0.85336 1.91019 1.56257 1.70813 1.16058 1.84482 1.63864 1.39297 1.45468 0.93703 0.93135 0.90888 0.95558 0.94219 0.91888 0.89556 0.88469 0.88317 0.88593 0.73353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.00 10.31 59.85 0.62 2.61 16 2 N -1.00 -21.73 3.23 -123.05 -0.40 -22.13 16 3 C 0.23 5.89 4.72 -5.19 -0.02 5.86 16 4 C -0.62 -16.24 9.38 -34.44 -0.32 -16.56 16 5 H 0.06 1.41 7.81 -52.48 -0.41 1.00 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -26.55 13.65 55.43 0.76 -25.79 16 8 Si 1.07 23.61 29.90 -169.99 -5.08 18.52 16 9 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 S 2.80 60.40 6.58 -107.50 -0.71 59.69 16 13 O -0.96 -21.69 13.50 -67.21 -0.91 -22.60 16 14 O -0.97 -24.15 16.69 -57.17 -0.95 -25.11 16 15 N -1.02 -17.78 4.01 -119.35 -0.48 -18.26 16 16 C 0.13 1.86 8.71 -8.65 -0.08 1.78 16 17 C -0.13 -1.40 8.00 -26.35 -0.21 -1.61 16 18 C 0.16 2.16 4.64 -73.56 -0.34 1.82 16 19 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 20 C 0.45 6.29 7.88 36.01 0.28 6.58 16 21 O -0.46 -8.54 13.71 -26.91 -0.37 -8.91 16 22 O -0.52 -5.24 13.42 -39.23 -0.53 -5.77 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.83 7.79 -51.93 -0.40 0.43 16 25 H 0.07 1.30 8.07 -51.93 -0.42 0.89 16 26 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 27 H 0.04 1.10 6.78 -51.93 -0.35 0.75 16 28 H 0.27 7.97 7.22 -40.82 -0.29 7.68 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.41 2.51 9.10 45.56 0.41 2.92 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -36.59 298.70 -7.55 -44.14 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.21 Total: 0.76 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.17 Total: 0.96 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.12 Total: -66.18 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -2.76 Total: -62.39 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.52 kcal Atomic # 16 Polarization: 60.40 SS G_CDS: -0.71 Total: 59.69 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.59 -7.55 -44.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393774365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.135 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds