Wall clock time and date at job start Mon Mar 30 2020 23:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99751 * 2 1 4 4 C 1.50706 * 109.47128 * 85.00265 * 3 2 1 5 5 H 1.08005 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47483 * 269.99808 * 8 6 4 10 10 H 1.48499 * 109.47134 * 30.00322 * 8 6 4 11 11 H 1.48507 * 109.46904 * 150.00145 * 8 6 4 12 12 S 1.65596 * 119.99966 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.40729 * 23.53774 * 12 2 1 14 14 O 1.42103 * 106.40236 * 156.46090 * 12 2 1 15 15 N 1.65598 * 107.21978 * 269.99786 * 12 2 1 16 16 C 1.47072 * 136.05849 * 269.63783 * 15 12 2 17 17 C 1.53237 * 88.08158 * 207.20007 * 16 15 12 18 18 C 1.47065 * 136.06112 * 89.99717 * 15 12 2 19 19 H 1.08997 * 113.47018 * 267.69143 * 18 15 12 20 20 C 1.50707 * 113.46488 * 38.06697 * 18 15 12 21 21 O 1.20830 * 119.99689 * 0.02562 * 20 18 15 22 22 O 1.34220 * 120.00081 * 179.97438 * 20 18 15 23 23 H 1.09004 * 109.47075 * 89.99884 * 1 2 3 24 24 H 1.09003 * 109.46734 * 209.99399 * 1 2 3 25 25 H 1.08994 * 109.47124 * 329.99663 * 1 2 3 26 26 H 1.09001 * 109.47786 * 325.00538 * 3 2 1 27 27 H 1.09006 * 109.47401 * 205.00123 * 3 2 1 28 28 H 0.97001 * 119.99646 * 359.97438 * 7 6 4 29 29 H 1.09004 * 113.46493 * 321.93040 * 16 15 12 30 30 H 1.08997 * 113.47348 * 92.36449 * 16 15 12 31 31 H 1.09001 * 114.32312 * 220.46557 * 17 16 15 32 32 H 1.08992 * 114.20022 * 87.72649 * 17 16 15 33 33 H 0.96701 * 117.00309 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7656 1.4155 5 1 1.9282 1.1937 2.2332 6 6 3.0005 2.9503 1.6665 7 7 3.5033 3.6469 0.6707 8 14 3.1783 3.5665 3.4210 9 1 2.0180 4.4278 3.7632 10 1 3.2265 2.4088 4.3497 11 1 4.4320 4.3530 3.5447 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5454 14 8 3.5760 -1.1565 -0.5449 15 7 2.5382 -1.8593 1.5809 16 6 3.5818 -1.6263 2.5906 17 6 3.1635 -2.9437 3.2523 18 6 1.8112 -2.6415 2.5921 19 1 1.1488 -2.0387 3.2134 20 6 1.1310 -3.8635 2.0307 21 8 1.2177 -4.1153 0.8521 22 8 0.4299 -4.6727 2.8400 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6501 2.0044 -0.5893 27 1 3.1858 1.1178 -0.4343 28 1 3.4106 3.3271 -0.2403 29 1 4.5926 -1.6488 2.1832 30 1 3.3968 -0.7503 3.2121 31 1 3.1458 -2.9131 4.3417 32 1 3.6685 -3.8237 2.8542 33 1 0.0110 -5.4441 2.4341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393774365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:35 Heat of formation + Delta-G solvation = -148.064224 kcal Electronic energy + Delta-G solvation = -21200.930032 eV Core-core repulsion = 17775.242995 eV Total energy + Delta-G solvation = -3425.687037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71081 -39.60822 -38.31388 -37.45002 -37.00568 -36.84629 -34.66794 -29.85247 -29.37218 -28.56263 -26.64181 -24.42325 -23.30249 -22.27221 -19.87560 -19.24639 -19.01932 -18.99491 -18.25155 -17.69596 -17.26212 -16.41060 -16.01468 -15.63101 -15.36243 -15.08695 -14.87249 -14.58604 -14.13265 -14.05552 -13.75583 -13.47067 -13.24249 -13.19291 -13.09008 -12.89298 -12.61813 -12.40232 -12.38159 -12.34161 -11.92783 -11.83450 -11.32582 -11.24845 -10.56044 -10.26657 -9.77942 -8.63160 -6.39883 -0.44665 1.15945 1.59201 1.67785 1.77245 1.84348 2.02629 2.59605 2.62427 3.06294 3.19142 3.36873 3.69663 3.91514 4.12087 4.25153 4.44850 4.51290 4.60942 4.67309 4.77209 4.87043 4.92257 4.96447 5.12652 5.27397 5.37111 5.64499 5.72152 5.85237 6.23587 6.49635 7.02923 7.43031 8.73041 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.007401 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.913258 B = 3782.302422 C = 4358.810271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -1.003 6.003 3 C 0.243 3.757 4 C -0.615 4.615 5 H 0.072 0.928 6 C -0.033 4.033 7 N -0.937 5.937 8 Si 1.118 2.882 9 H -0.277 1.277 10 H -0.250 1.250 11 H -0.291 1.291 12 S 2.806 3.194 13 O -0.972 6.972 14 O -1.019 7.019 15 N -1.036 6.036 16 C 0.116 3.884 17 C -0.102 4.102 18 C 0.154 3.846 19 H 0.157 0.843 20 C 0.454 3.546 21 O -0.513 6.513 22 O -0.501 6.501 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.011 0.989 27 H 0.007 0.993 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 -13.963 11.377 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.844 5.844 3 C 0.119 3.881 4 C -0.653 4.653 5 H 0.090 0.910 6 C -0.231 4.231 7 N -0.574 5.574 8 Si 0.939 3.061 9 H -0.203 1.203 10 H -0.174 1.174 11 H -0.217 1.217 12 S 2.817 3.183 13 O -0.956 6.956 14 O -1.004 7.004 15 N -0.878 5.878 16 C -0.008 4.008 17 C -0.142 4.142 18 C 0.046 3.954 19 H 0.175 0.825 20 C 0.294 3.706 21 O -0.400 6.400 22 O -0.314 6.314 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.029 0.971 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -4.383 -12.905 11.078 17.563 hybrid contribution -1.048 -1.062 -2.011 2.504 sum -5.431 -13.967 9.067 17.515 Atomic orbital electron populations 1.21371 0.78135 1.03031 1.01668 1.57652 1.15559 1.22080 1.89096 1.18908 0.90305 0.81132 0.97778 1.22627 1.39781 1.09936 0.92989 0.91017 1.27438 0.92406 0.94153 1.09092 1.70896 1.44901 1.41140 1.00505 0.82963 0.76778 0.76700 0.69692 1.20259 1.17352 1.21712 1.01019 0.72320 0.71866 0.73068 1.93648 1.66552 1.58678 1.76716 1.93498 1.43511 1.86016 1.77359 1.60630 1.34800 1.65212 1.27148 1.22703 0.91389 0.99607 0.87102 1.23452 0.89976 0.97170 1.03590 1.22176 0.97526 0.87854 0.87823 0.82541 1.23949 0.76510 0.85527 0.84655 1.91016 1.58420 1.72207 1.18378 1.84431 1.62909 1.39661 1.44390 0.92904 0.91033 0.90477 0.97088 0.97498 0.93700 0.90597 0.87851 0.83474 0.88197 0.71125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.71 10.31 127.77 1.32 5.03 16 2 N -1.00 -44.18 3.23 -543.22 -1.75 -45.93 16 3 C 0.24 12.67 4.72 85.64 0.40 13.08 16 4 C -0.61 -31.99 9.38 25.60 0.24 -31.75 16 5 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 6 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 7 N -0.94 -56.23 13.65 21.45 0.29 -55.93 16 8 Si 1.12 45.74 29.90 68.60 2.05 47.79 16 9 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 S 2.81 122.65 6.58 -56.49 -0.37 122.28 16 13 O -0.97 -44.38 13.50 -118.40 -1.60 -45.97 16 14 O -1.02 -52.67 16.69 -128.00 -2.14 -54.81 16 15 N -1.04 -34.50 4.01 -531.50 -2.13 -36.63 16 16 C 0.12 3.02 8.71 83.08 0.72 3.74 16 17 C -0.10 -1.68 8.00 30.84 0.25 -1.43 16 18 C 0.15 3.52 4.64 41.04 0.19 3.71 16 19 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 20 C 0.45 11.54 7.88 71.24 0.56 12.10 16 21 O -0.51 -18.57 13.71 29.75 0.41 -18.16 16 22 O -0.50 -8.19 13.42 -51.32 -0.69 -8.88 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 2.24 7.79 -2.39 -0.02 2.23 16 25 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 26 H 0.01 0.60 7.98 -2.39 -0.02 0.58 16 27 H 0.01 0.41 6.78 -2.38 -0.02 0.40 16 28 H 0.25 15.66 7.22 -92.71 -0.67 14.99 16 29 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 33 H 0.43 3.80 9.10 -74.06 -0.67 3.13 16 Total: -1.00 -82.31 298.70 -1.22 -83.52 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.56 Total: 9.56 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.15 Total: 3.17 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -3.59 Total: -138.50 kcal Atomic # 8 Polarization: -123.81 SS G_CDS: -4.02 Total: -127.82 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.05 Total: 47.79 kcal Atomic # 16 Polarization: 122.65 SS G_CDS: -0.37 Total: 122.28 kcal Total: -82.31 -1.22 -83.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393774365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.542 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds