Wall clock time and date at job start Tue Mar 31 2020 00:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48494 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46959 * 299.99500 * 3 2 1 6 6 H 1.48500 * 109.47258 * 59.99142 * 3 2 1 7 7 C 1.37876 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47066 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.46792 * 179.97438 * 11 10 9 13 13 O 1.42097 * 109.47245 * 289.05336 * 12 11 10 14 14 C 1.76207 * 102.99908 * 179.97438 * 12 11 10 15 15 C 1.38965 * 119.68425 * 269.98307 * 14 12 11 16 16 C 1.36584 * 120.80902 * 179.97438 * 15 14 12 17 17 C 1.39284 * 119.85696 * 0.02562 * 16 15 14 18 18 N 1.37044 * 133.84696 * 180.02562 * 17 16 15 19 19 H 0.96998 * 125.45689 * 359.97035 * 18 17 16 20 20 N 1.39881 * 109.07392 * 179.32755 * 18 17 16 21 21 C 1.30242 * 110.08325 * 0.58489 * 20 18 17 22 22 C 1.40817 * 119.41756 * 359.74788 * 17 16 15 23 23 C 1.36469 * 119.68157 * 90.00123 * 14 12 11 24 24 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47086 * 59.99840 * 9 7 2 26 26 H 1.09002 * 109.46990 * 300.00089 * 9 7 2 27 27 H 1.09000 * 109.47245 * 59.99901 * 10 9 7 28 28 H 1.08998 * 109.46710 * 299.99835 * 10 9 7 29 29 H 1.09000 * 109.47149 * 59.99867 * 11 10 9 30 30 H 1.09002 * 109.47093 * 300.00014 * 11 10 9 31 31 H 1.07997 * 119.59318 * 359.97438 * 15 14 12 32 32 H 1.08004 * 120.07445 * 180.02562 * 16 15 14 33 33 H 1.08003 * 126.11009 * 179.51077 * 21 20 18 34 34 H 1.08002 * 120.18015 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 16 2.6590 -6.3658 0.0032 13 8 3.2993 -6.4423 -1.2630 14 6 1.6116 -7.7828 0.0047 15 6 1.2032 -8.3355 1.2125 16 6 0.3911 -9.4333 1.2405 17 6 -0.0357 -10.0106 0.0469 18 7 -0.8308 -11.0847 -0.2571 19 1 -1.2614 -11.6666 0.3884 20 7 -0.9335 -11.1983 -1.6475 21 6 -0.2365 -10.2621 -2.2255 22 6 0.3732 -9.4491 -1.1780 23 6 1.2096 -8.3272 -1.1804 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 0.8539 -5.0454 -0.8877 30 1 0.8531 -5.0441 0.8922 31 1 1.5320 -7.8915 2.1405 32 1 0.0805 -9.8528 2.1860 33 1 -0.1289 -10.1138 -3.2898 34 1 1.5320 -7.8922 -2.1149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414318909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:31 Heat of formation + Delta-G solvation = 32.525072 kcal Electronic energy + Delta-G solvation = -17967.510040 eV Core-core repulsion = 14992.795957 eV Total energy + Delta-G solvation = -2974.714083 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47785 -37.39256 -35.47536 -34.39686 -32.71480 -31.99525 -30.20763 -29.74509 -27.45485 -23.61711 -23.34624 -22.61391 -21.93919 -20.28248 -18.32878 -17.79638 -16.57574 -16.20754 -15.89780 -15.14554 -15.05877 -14.62034 -14.57452 -14.34708 -14.21423 -13.74100 -13.01479 -12.47854 -12.25020 -12.24223 -11.88506 -11.53962 -11.32313 -11.17906 -10.86802 -10.75605 -10.66247 -10.60825 -10.15720 -9.77343 -9.32059 -9.07333 -8.99203 -8.51726 -8.35124 -7.97620 -5.99735 -4.02322 0.69816 0.94283 2.02644 2.20891 2.39055 2.93014 3.31850 3.39410 3.43860 3.50480 4.08619 4.31290 4.36193 4.46868 4.54636 4.90478 5.16228 5.24722 5.36108 5.44015 5.56324 5.67818 5.69524 5.94555 6.11336 6.13588 6.24417 6.53428 6.54474 6.74094 6.94564 7.06852 7.23643 7.67822 7.80483 8.00148 8.41728 9.05182 9.61983 11.11506 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.033553 B = 0.003172 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.294262 B = 8824.492301 C = 9032.932844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.439 4.439 12 S 1.316 4.684 13 O -0.859 6.859 14 C -0.492 4.492 15 C 0.000 4.000 16 C -0.159 4.159 17 C 0.152 3.848 18 N -0.512 5.512 19 H 0.440 0.560 20 N -0.256 5.256 21 C 0.087 3.913 22 C -0.199 4.199 23 C 0.036 3.964 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.199 0.801 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -21.647 5.073 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.577 4.577 12 S 1.516 4.484 13 O -0.854 6.854 14 C -0.589 4.589 15 C -0.022 4.022 16 C -0.183 4.183 17 C 0.035 3.965 18 N -0.226 5.226 19 H 0.284 0.716 20 N -0.069 5.069 21 C -0.112 4.112 22 C -0.208 4.208 23 C 0.014 3.986 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.216 0.784 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.132 -22.599 4.848 23.140 hybrid contribution -1.077 1.129 -1.353 2.065 sum 0.055 -21.469 3.495 21.752 Atomic orbital electron populations 1.69980 1.06093 1.26485 1.51001 1.25035 0.94850 0.99312 0.95329 0.86536 0.80184 0.83746 0.77555 1.19633 1.21076 1.20992 1.21323 0.93186 0.91039 1.50415 0.92457 1.19096 0.93840 0.90916 0.97361 1.21313 0.98965 0.92009 1.00961 1.27793 1.11914 1.10712 1.07263 1.69327 0.87044 0.82554 1.09524 1.93071 1.63902 1.83628 1.44838 1.27504 1.17048 1.17935 0.96407 1.20428 0.92151 0.92571 0.97009 1.19917 1.03887 0.99576 0.94870 1.18991 0.92617 0.89038 0.95888 1.46033 1.44899 1.26921 1.04770 0.71575 1.76596 1.20360 1.21891 0.88047 1.25204 0.94371 0.91614 0.99986 1.20037 1.07034 1.01572 0.92132 1.20443 0.88949 0.90636 0.98531 0.93074 0.96758 0.96279 0.92058 0.92913 0.90035 0.87087 0.83724 0.85136 0.78445 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 10 C -0.09 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C -0.44 -6.89 5.88 37.16 0.22 -6.67 16 12 S 1.32 16.37 13.53 -107.50 -1.45 14.92 16 13 O -0.86 -15.79 16.85 -35.23 -0.59 -16.38 16 14 C -0.49 -5.81 5.58 -39.95 -0.22 -6.03 16 15 C 0.00 0.00 9.66 -39.91 -0.39 -0.38 16 16 C -0.16 -1.43 10.03 -39.79 -0.40 -1.83 16 17 C 0.15 1.68 7.34 -84.17 -0.62 1.06 16 18 N -0.51 -5.08 7.37 32.36 0.24 -4.84 16 19 H 0.44 2.89 8.96 -182.77 -1.64 1.25 16 20 N -0.26 -2.94 12.55 31.87 0.40 -2.54 16 21 C 0.09 0.95 12.28 -15.15 -0.19 0.76 16 22 C -0.20 -2.48 6.37 -105.20 -0.67 -3.15 16 23 C 0.04 0.48 9.44 -39.58 -0.37 0.10 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.11 1.50 8.14 -51.92 -0.42 1.07 16 31 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.20 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.13 1.90 7.40 -52.49 -0.39 1.51 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -38.02 311.17 -9.70 -47.72 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.37 Total: -2.78 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -3.32 Total: -31.13 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 1.37 Total: -33.64 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.59 Total: -16.38 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 16.37 SS G_CDS: -1.45 Total: 14.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -38.02 -9.70 -47.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414318909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.249 kcal (2) G-P(sol) polarization free energy of solvation -38.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds