Wall clock time and date at job start Tue Mar 31 2020 00:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48494 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46959 * 299.99500 * 3 2 1 6 6 H 1.48500 * 109.47258 * 59.99142 * 3 2 1 7 7 C 1.37876 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47066 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.46792 * 179.97438 * 11 10 9 13 13 O 1.42097 * 109.47245 * 289.05336 * 12 11 10 14 14 C 1.76207 * 102.99908 * 179.97438 * 12 11 10 15 15 C 1.38965 * 119.68425 * 269.98307 * 14 12 11 16 16 C 1.36584 * 120.80902 * 179.97438 * 15 14 12 17 17 C 1.39284 * 119.85696 * 0.02562 * 16 15 14 18 18 N 1.37044 * 133.84696 * 180.02562 * 17 16 15 19 19 H 0.96998 * 125.45689 * 359.97035 * 18 17 16 20 20 N 1.39881 * 109.07392 * 179.32755 * 18 17 16 21 21 C 1.30242 * 110.08325 * 0.58489 * 20 18 17 22 22 C 1.40817 * 119.41756 * 359.74788 * 17 16 15 23 23 C 1.36469 * 119.68157 * 90.00123 * 14 12 11 24 24 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47086 * 59.99840 * 9 7 2 26 26 H 1.09002 * 109.46990 * 300.00089 * 9 7 2 27 27 H 1.09000 * 109.47245 * 59.99901 * 10 9 7 28 28 H 1.08998 * 109.46710 * 299.99835 * 10 9 7 29 29 H 1.09000 * 109.47149 * 59.99867 * 11 10 9 30 30 H 1.09002 * 109.47093 * 300.00014 * 11 10 9 31 31 H 1.07997 * 119.59318 * 359.97438 * 15 14 12 32 32 H 1.08004 * 120.07445 * 180.02562 * 16 15 14 33 33 H 1.08003 * 126.11009 * 179.51077 * 21 20 18 34 34 H 1.08002 * 120.18015 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 16 2.6590 -6.3658 0.0032 13 8 3.2993 -6.4423 -1.2630 14 6 1.6116 -7.7828 0.0047 15 6 1.2032 -8.3355 1.2125 16 6 0.3911 -9.4333 1.2405 17 6 -0.0357 -10.0106 0.0469 18 7 -0.8308 -11.0847 -0.2571 19 1 -1.2614 -11.6666 0.3884 20 7 -0.9335 -11.1983 -1.6475 21 6 -0.2365 -10.2621 -2.2255 22 6 0.3732 -9.4491 -1.1780 23 6 1.2096 -8.3272 -1.1804 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 0.8539 -5.0454 -0.8877 30 1 0.8531 -5.0441 0.8922 31 1 1.5320 -7.8915 2.1405 32 1 0.0805 -9.8528 2.1860 33 1 -0.1289 -10.1138 -3.2898 34 1 1.5320 -7.8922 -2.1149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414318909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:31 Heat of formation + Delta-G solvation = 5.248479 kcal Electronic energy + Delta-G solvation = -17968.692842 eV Core-core repulsion = 14992.795957 eV Total energy + Delta-G solvation = -2975.896885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29041 -38.20945 -36.80471 -36.25405 -33.97236 -33.53616 -31.02104 -30.59144 -29.33305 -25.36422 -24.31140 -23.51118 -22.77717 -21.98976 -19.19665 -18.79008 -18.42852 -17.43997 -16.83141 -16.51065 -16.08445 -16.00022 -15.82397 -15.58251 -15.23807 -14.57085 -14.34844 -14.10430 -13.74700 -13.66266 -13.05025 -13.00484 -12.67845 -12.51249 -12.41199 -12.27709 -12.01435 -11.77600 -11.53913 -11.45991 -11.25088 -10.82097 -10.54579 -9.86212 -9.45003 -9.06815 -8.18441 -6.29778 -0.16506 0.07199 1.00738 1.38863 1.41715 1.42529 1.56032 1.66073 1.89453 2.43002 2.63059 3.01154 3.14696 3.47693 3.60356 3.77167 4.15138 4.20935 4.26839 4.32165 4.52320 4.68200 4.69210 4.89930 4.93232 5.20427 5.23623 5.26639 5.27730 5.31427 5.54434 5.74804 5.75400 5.87304 6.25144 6.26035 6.46402 6.88182 7.39806 8.93325 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.033553 B = 0.003172 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.294262 B = 8824.492301 C = 9032.932844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.088 4.088 11 C -0.448 4.448 12 S 1.406 4.594 13 O -0.919 6.919 14 C -0.502 4.502 15 C 0.004 3.996 16 C -0.153 4.153 17 C 0.145 3.855 18 N -0.504 5.504 19 H 0.454 0.546 20 N -0.274 5.274 21 C 0.079 3.921 22 C -0.226 4.226 23 C 0.010 3.990 24 H 0.263 0.737 25 H -0.025 1.025 26 H 0.007 0.993 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.138 0.862 31 H 0.196 0.804 32 H 0.171 0.829 33 H 0.220 0.780 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -22.476 7.501 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.584 4.584 12 S 1.606 4.394 13 O -0.915 6.915 14 C -0.601 4.601 15 C -0.017 4.017 16 C -0.175 4.175 17 C 0.027 3.973 18 N -0.220 5.220 19 H 0.301 0.699 20 N -0.087 5.087 21 C -0.119 4.119 22 C -0.235 4.235 23 C -0.012 4.012 24 H 0.072 0.928 25 H -0.006 1.006 26 H 0.025 0.975 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.213 0.787 32 H 0.188 0.812 33 H 0.236 0.764 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.900 -23.418 7.280 24.597 hybrid contribution -1.392 1.249 -2.093 2.807 sum 0.507 -22.168 5.187 22.773 Atomic orbital electron populations 1.70113 1.07872 1.27657 1.51959 1.26011 0.95774 1.03473 0.94788 0.85396 0.79247 0.78692 0.77713 1.18303 1.20961 1.19929 1.21812 0.93803 0.92391 1.50168 0.91786 1.19034 0.94421 0.92966 0.94828 1.21135 0.97953 0.92011 1.01595 1.27875 1.12606 1.10613 1.07262 1.68571 0.84167 0.80457 1.06246 1.92944 1.66210 1.84595 1.47738 1.27388 1.17715 1.17603 0.97427 1.21010 0.91048 0.92184 0.97478 1.20437 1.02595 0.98901 0.95588 1.19368 0.92520 0.89121 0.96284 1.46056 1.44564 1.26846 1.04547 0.69889 1.76548 1.20807 1.22278 0.89020 1.25631 0.93947 0.91202 1.01072 1.20243 1.07726 1.01969 0.93602 1.20418 0.90465 0.91836 0.98445 0.92843 1.00621 0.97497 0.88840 0.94769 0.92804 0.84400 0.78730 0.81163 0.76390 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.51 5.16 30.59 0.16 -3.36 16 11 C -0.45 -13.92 5.88 71.98 0.42 -13.50 16 12 S 1.41 33.27 13.53 -56.49 -0.76 32.51 16 13 O -0.92 -34.22 16.85 -148.98 -2.51 -36.73 16 14 C -0.50 -11.08 5.58 22.03 0.12 -10.95 16 15 C 0.00 0.06 9.66 22.06 0.21 0.27 16 16 C -0.15 -2.14 10.03 22.13 0.22 -1.92 16 17 C 0.14 2.90 7.34 39.21 0.29 3.19 16 18 N -0.50 -9.11 7.37 -51.53 -0.38 -9.49 16 19 H 0.45 4.95 8.96 -213.46 -1.91 3.03 16 20 N -0.27 -6.08 12.55 -53.09 -0.67 -6.75 16 21 C 0.08 1.74 12.28 86.92 1.07 2.80 16 22 C -0.23 -5.57 6.37 -20.24 -0.13 -5.70 16 23 C 0.01 0.28 9.44 22.27 0.21 0.49 16 24 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 25 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.11 3.40 7.40 -2.91 -0.02 3.38 16 Total: -1.00 -85.72 311.17 0.62 -85.10 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -0.79 Total: 3.83 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 3.42 Total: -57.71 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -0.76 Total: -73.37 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -2.51 Total: -36.73 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 33.27 SS G_CDS: -0.76 Total: 32.51 kcal Total: -85.72 0.62 -85.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414318909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.352 kcal (2) G-P(sol) polarization free energy of solvation -85.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds