Wall clock time and date at job start Tue Mar 31 2020 00:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99726 * 2 1 4 4 H 1.48508 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47302 * 299.99643 * 3 2 1 6 6 H 1.48495 * 109.47293 * 59.99898 * 3 2 1 7 7 C 1.37876 * 120.00554 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00475 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46909 * 179.97438 * 10 9 7 12 12 S 1.81393 * 109.47033 * 179.97438 * 11 10 9 13 13 O 1.42102 * 109.46787 * 70.94314 * 12 11 10 14 14 C 1.76200 * 103.00062 * 179.97438 * 12 11 10 15 15 C 1.38969 * 119.68986 * 270.31532 * 14 12 11 16 16 C 1.36587 * 120.81343 * 180.29950 * 15 14 12 17 17 C 1.39281 * 119.85628 * 359.68994 * 16 15 14 18 18 N 1.37041 * 133.85554 * 180.02562 * 17 16 15 19 19 H 0.96996 * 125.45344 * 359.97438 * 18 17 16 20 20 N 1.39872 * 109.07856 * 179.97438 * 18 17 16 21 21 C 1.30237 * 110.08761 * 0.02562 * 20 18 17 22 22 C 1.40819 * 119.41703 * 359.97438 * 17 16 15 23 23 C 1.36464 * 119.68145 * 89.99968 * 14 12 11 24 24 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47366 * 59.99090 * 9 7 2 26 26 H 1.09000 * 109.46501 * 299.99231 * 9 7 2 27 27 H 1.08996 * 109.47228 * 59.99539 * 10 9 7 28 28 H 1.09000 * 109.46982 * 299.99076 * 10 9 7 29 29 H 1.09005 * 109.46906 * 59.99596 * 11 10 9 30 30 H 1.09005 * 109.46524 * 299.99898 * 11 10 9 31 31 H 1.08004 * 119.59055 * 359.97438 * 15 14 12 32 32 H 1.08005 * 120.07354 * 179.70648 * 16 15 14 33 33 H 1.08002 * 126.10845 * 179.97438 * 21 20 18 34 34 H 1.08002 * 120.18642 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 16 2.6594 -6.3658 0.0004 13 8 3.3005 -6.4414 1.2663 14 6 1.6121 -7.7828 0.0020 15 6 1.1989 -8.3320 1.2099 16 6 0.3921 -9.4337 1.2380 17 6 -0.0302 -10.0145 0.0445 18 7 -0.8194 -11.0927 -0.2596 19 1 -1.2482 -11.6760 0.3860 20 7 -0.9075 -11.2172 -1.6500 21 6 -0.2164 -10.2767 -2.2279 22 6 0.3817 -9.4553 -1.1805 23 6 1.2092 -8.3266 -1.1829 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6243 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8904 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0451 -0.8886 30 1 0.8542 -5.0446 0.8915 31 1 1.5241 -7.8851 2.1379 32 1 0.0820 -9.8535 2.1836 33 1 -0.1062 -10.1304 -3.2923 34 1 1.5308 -7.8912 -2.1175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414318910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:36 Heat of formation + Delta-G solvation = 32.423071 kcal Electronic energy + Delta-G solvation = -17951.198787 eV Core-core repulsion = 14976.480281 eV Total energy + Delta-G solvation = -2974.718506 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48576 -37.39937 -35.45483 -34.39800 -32.74545 -31.99627 -30.18453 -29.76572 -27.45652 -23.65945 -23.31761 -22.60718 -21.93954 -20.28461 -18.27637 -17.84497 -16.64574 -16.26598 -15.82855 -15.15900 -15.06921 -14.64000 -14.53970 -14.28168 -14.21451 -13.81412 -12.96313 -12.48398 -12.25741 -12.21326 -11.88373 -11.58198 -11.35870 -11.17494 -10.86833 -10.76008 -10.65913 -10.62714 -10.15193 -9.77531 -9.31986 -9.07101 -8.99308 -8.51901 -8.35206 -7.98665 -5.99765 -4.02396 0.68992 0.94515 2.01716 2.20952 2.38673 2.92530 3.31828 3.39394 3.43797 3.50374 4.08118 4.28051 4.35944 4.46814 4.54447 4.94356 5.08934 5.26990 5.36051 5.43507 5.56754 5.67566 5.68881 5.96825 6.09088 6.14784 6.24156 6.53693 6.54318 6.73871 6.93298 7.06682 7.23288 7.67738 7.80365 8.00061 8.41616 9.05107 9.61922 11.11478 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.003194 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.402476 B = 8763.279160 C = 9131.028204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.439 4.439 12 S 1.317 4.683 13 O -0.858 6.858 14 C -0.490 4.490 15 C -0.009 4.009 16 C -0.158 4.158 17 C 0.152 3.848 18 N -0.513 5.513 19 H 0.439 0.561 20 N -0.257 5.257 21 C 0.088 3.912 22 C -0.200 4.200 23 C 0.044 3.956 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.202 0.798 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -21.613 -5.479 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.577 4.577 12 S 1.516 4.484 13 O -0.854 6.854 14 C -0.587 4.587 15 C -0.031 4.031 16 C -0.181 4.181 17 C 0.035 3.965 18 N -0.227 5.227 19 H 0.284 0.716 20 N -0.070 5.070 21 C -0.111 4.111 22 C -0.209 4.209 23 C 0.023 3.977 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.218 0.782 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.167 -22.570 -5.644 23.295 hybrid contribution -1.088 1.124 2.398 2.863 sum 0.080 -21.447 -3.246 21.691 Atomic orbital electron populations 1.69974 1.06093 1.26498 1.50997 1.25033 0.94847 0.99311 0.95327 0.86537 0.80185 0.83749 0.77555 1.19632 1.20977 1.21091 1.21324 0.93186 0.91038 1.50421 0.92455 1.19097 0.93838 0.90914 0.97364 1.21316 0.98968 0.92006 1.00962 1.27798 1.11920 1.10710 1.07280 1.69324 0.86979 0.82550 1.09572 1.93072 1.63895 1.83589 1.44817 1.27523 1.16738 1.18040 0.96379 1.20712 0.91443 0.92807 0.98132 1.19873 1.03938 0.99313 0.95014 1.18962 0.92556 0.89069 0.95882 1.46040 1.45298 1.26550 1.04787 0.71633 1.76588 1.20390 1.22009 0.87975 1.25194 0.94522 0.91439 0.99903 1.20040 1.07363 1.01610 0.91904 1.20124 0.89751 0.90415 0.97444 0.93068 0.96257 0.96771 0.92934 0.92033 0.87073 0.90016 0.84810 0.85625 0.78157 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 10 C -0.09 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C -0.44 -6.88 5.88 37.16 0.22 -6.66 16 12 S 1.32 16.35 13.52 -107.50 -1.45 14.90 16 13 O -0.86 -15.81 16.87 -35.23 -0.59 -16.40 16 14 C -0.49 -5.78 5.57 -39.95 -0.22 -6.00 16 15 C -0.01 -0.12 9.36 -39.91 -0.37 -0.50 16 16 C -0.16 -1.79 10.03 -39.79 -0.40 -2.19 16 17 C 0.15 1.70 7.34 -84.17 -0.62 1.08 16 18 N -0.51 -5.00 7.37 32.36 0.24 -4.76 16 19 H 0.44 3.01 8.96 -182.77 -1.64 1.37 16 20 N -0.26 -2.66 12.55 31.87 0.40 -2.26 16 21 C 0.09 0.76 12.28 -15.15 -0.19 0.58 16 22 C -0.20 -2.08 6.37 -105.20 -0.67 -2.75 16 23 C 0.04 0.42 9.74 -39.58 -0.39 0.03 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 31 H 0.13 1.87 7.42 -52.48 -0.39 1.49 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -38.08 311.18 -9.70 -47.78 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.37 Total: -2.88 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -3.32 Total: -31.40 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 1.37 Total: -33.27 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.59 Total: -16.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 16.35 SS G_CDS: -1.45 Total: 14.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -38.08 -9.70 -47.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414318910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.204 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds