Wall clock time and date at job start Tue Mar 31 2020 00:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99726 * 2 1 4 4 H 1.48508 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47302 * 299.99643 * 3 2 1 6 6 H 1.48495 * 109.47293 * 59.99898 * 3 2 1 7 7 C 1.37876 * 120.00554 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00475 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46909 * 179.97438 * 10 9 7 12 12 S 1.81393 * 109.47033 * 179.97438 * 11 10 9 13 13 O 1.42102 * 109.46787 * 70.94314 * 12 11 10 14 14 C 1.76200 * 103.00062 * 179.97438 * 12 11 10 15 15 C 1.38969 * 119.68986 * 270.31532 * 14 12 11 16 16 C 1.36587 * 120.81343 * 180.29950 * 15 14 12 17 17 C 1.39281 * 119.85628 * 359.68994 * 16 15 14 18 18 N 1.37041 * 133.85554 * 180.02562 * 17 16 15 19 19 H 0.96996 * 125.45344 * 359.97438 * 18 17 16 20 20 N 1.39872 * 109.07856 * 179.97438 * 18 17 16 21 21 C 1.30237 * 110.08761 * 0.02562 * 20 18 17 22 22 C 1.40819 * 119.41703 * 359.97438 * 17 16 15 23 23 C 1.36464 * 119.68145 * 89.99968 * 14 12 11 24 24 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47366 * 59.99090 * 9 7 2 26 26 H 1.09000 * 109.46501 * 299.99231 * 9 7 2 27 27 H 1.08996 * 109.47228 * 59.99539 * 10 9 7 28 28 H 1.09000 * 109.46982 * 299.99076 * 10 9 7 29 29 H 1.09005 * 109.46906 * 59.99596 * 11 10 9 30 30 H 1.09005 * 109.46524 * 299.99898 * 11 10 9 31 31 H 1.08004 * 119.59055 * 359.97438 * 15 14 12 32 32 H 1.08005 * 120.07354 * 179.70648 * 16 15 14 33 33 H 1.08002 * 126.10845 * 179.97438 * 21 20 18 34 34 H 1.08002 * 120.18642 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 16 2.6594 -6.3658 0.0004 13 8 3.3005 -6.4414 1.2663 14 6 1.6121 -7.7828 0.0020 15 6 1.1989 -8.3320 1.2099 16 6 0.3921 -9.4337 1.2380 17 6 -0.0302 -10.0145 0.0445 18 7 -0.8194 -11.0927 -0.2596 19 1 -1.2482 -11.6760 0.3860 20 7 -0.9075 -11.2172 -1.6500 21 6 -0.2164 -10.2767 -2.2279 22 6 0.3817 -9.4553 -1.1805 23 6 1.2092 -8.3266 -1.1829 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6243 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8904 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0451 -0.8886 30 1 0.8542 -5.0446 0.8915 31 1 1.5241 -7.8851 2.1379 32 1 0.0820 -9.8535 2.1836 33 1 -0.1062 -10.1304 -3.2923 34 1 1.5308 -7.8912 -2.1175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414318910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:35 Heat of formation + Delta-G solvation = 5.097000 kcal Electronic energy + Delta-G solvation = -17952.383734 eV Core-core repulsion = 14976.480281 eV Total energy + Delta-G solvation = -2975.903454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24811 -38.22429 -36.77473 -36.24940 -33.96930 -33.51353 -31.00013 -30.58200 -29.32796 -25.36165 -24.30482 -23.51845 -22.67122 -21.98433 -19.09569 -18.83745 -18.42844 -17.51209 -16.88386 -16.46931 -16.15247 -15.95349 -15.71420 -15.57606 -15.10311 -14.50664 -14.35238 -14.18544 -13.75525 -13.65794 -13.06715 -13.00495 -12.67545 -12.49880 -12.41291 -12.33163 -11.95402 -11.75434 -11.53073 -11.41886 -11.24685 -10.80726 -10.54407 -9.86723 -9.45922 -9.05676 -8.18217 -6.29577 -0.08932 0.02517 1.01210 1.41818 1.42674 1.49258 1.56122 1.67049 1.90734 2.43154 2.62501 3.01894 3.14883 3.52109 3.70870 3.78145 4.09851 4.18013 4.27005 4.36311 4.43881 4.68921 4.75918 4.91898 4.94104 5.09913 5.24065 5.25657 5.27237 5.42111 5.54728 5.74660 5.75204 5.87581 6.22963 6.26265 6.53357 6.88409 7.40003 8.93544 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.003194 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.402476 B = 8763.279160 C = 9131.028204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.088 4.088 11 C -0.449 4.449 12 S 1.408 4.592 13 O -0.919 6.919 14 C -0.513 4.513 15 C -0.034 4.034 16 C -0.165 4.165 17 C 0.141 3.859 18 N -0.511 5.511 19 H 0.448 0.552 20 N -0.282 5.282 21 C 0.104 3.896 22 C -0.216 4.216 23 C 0.065 3.935 24 H 0.263 0.737 25 H 0.007 0.993 26 H -0.025 1.025 27 H 0.033 0.967 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.139 0.861 33 H 0.245 0.755 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -22.383 -7.972 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.127 4.127 11 C -0.584 4.584 12 S 1.608 4.392 13 O -0.915 6.915 14 C -0.611 4.611 15 C -0.056 4.056 16 C -0.188 4.188 17 C 0.023 3.977 18 N -0.226 5.226 19 H 0.294 0.706 20 N -0.094 5.094 21 C -0.094 4.094 22 C -0.225 4.225 23 C 0.044 3.956 24 H 0.072 0.928 25 H 0.025 0.975 26 H -0.006 1.006 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.156 0.844 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.261 0.739 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.002 -23.331 -8.127 24.787 hybrid contribution -1.446 1.195 3.143 3.660 sum 0.556 -22.136 -4.984 22.697 Atomic orbital electron populations 1.70107 1.07872 1.27664 1.51967 1.26009 0.95771 1.03470 0.94793 0.85397 0.79250 0.78699 0.77710 1.18302 1.19909 1.20991 1.21814 0.93804 0.92394 1.50156 0.91783 1.19036 0.94422 0.92970 0.94827 1.21137 0.97952 0.92021 1.01587 1.27889 1.12645 1.10656 1.07255 1.68521 0.84051 0.80374 1.06282 1.92941 1.66226 1.84580 1.47761 1.27295 1.18502 1.18189 0.97160 1.20698 0.92902 0.94002 0.98009 1.19947 1.03712 0.99026 0.96108 1.19158 0.92738 0.89560 0.96291 1.46136 1.45001 1.26322 1.05126 0.70595 1.76603 1.21598 1.23179 0.88035 1.25929 0.92411 0.89624 1.01432 1.20431 1.07714 1.02144 0.92207 1.20657 0.87418 0.89163 0.98358 0.92842 0.97471 1.00649 0.94818 0.88797 0.84405 0.92810 0.87079 0.84348 0.73879 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.36 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.51 5.16 30.60 0.16 -3.35 16 11 C -0.45 -13.95 5.88 71.98 0.42 -13.52 16 12 S 1.41 33.31 13.52 -56.49 -0.76 32.55 16 13 O -0.92 -34.29 16.87 -148.98 -2.51 -36.81 16 14 C -0.51 -11.35 5.57 22.03 0.12 -11.22 16 15 C -0.03 -0.90 9.36 22.06 0.21 -0.70 16 16 C -0.16 -3.71 10.03 22.13 0.22 -3.49 16 17 C 0.14 2.93 7.34 39.21 0.29 3.21 16 18 N -0.51 -9.17 7.37 -51.53 -0.38 -9.55 16 19 H 0.45 5.71 8.96 -213.47 -1.91 3.79 16 20 N -0.28 -5.11 12.55 -53.09 -0.67 -5.78 16 21 C 0.10 1.40 12.28 86.92 1.07 2.47 16 22 C -0.22 -3.82 6.37 -20.24 -0.13 -3.95 16 23 C 0.07 0.99 9.74 22.27 0.22 1.21 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 26 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.11 3.36 7.42 -2.91 -0.02 3.33 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.25 0.81 8.06 -2.91 -0.02 0.78 16 34 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -85.77 311.18 0.61 -85.15 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -0.79 Total: 3.58 kcal Atomic # 6 Polarization: -61.79 SS G_CDS: 3.42 Total: -58.37 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -0.76 Total: -72.46 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -2.51 Total: -36.81 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 33.31 SS G_CDS: -0.76 Total: 32.55 kcal Total: -85.77 0.61 -85.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414318910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.252 kcal (2) G-P(sol) polarization free energy of solvation -85.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds