Wall clock time and date at job start Tue Mar 31 2020 01:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47281 * 312.70355 * 3 2 1 5 5 C 1.37093 * 120.00152 * 263.93139 * 4 3 2 6 6 H 1.08006 * 120.00375 * 199.75369 * 5 4 3 7 7 C 1.38959 * 120.00151 * 19.74787 * 5 4 3 8 8 N 1.31406 * 119.99578 * 21.75160 * 7 5 4 9 9 Si 1.86794 * 120.00202 * 201.74871 * 7 5 4 10 10 H 1.48501 * 109.46881 * 89.99997 * 9 7 5 11 11 H 1.48498 * 109.47249 * 210.00475 * 9 7 5 12 12 H 1.48506 * 109.47310 * 330.00193 * 9 7 5 13 13 C 1.34779 * 119.99828 * 83.92653 * 4 3 2 14 14 O 1.21295 * 119.99881 * 180.27222 * 13 4 3 15 15 C 1.50697 * 120.00017 * 0.02562 * 13 4 3 16 16 C 1.52995 * 109.47108 * 179.97438 * 15 13 4 17 17 C 1.50704 * 109.47129 * 179.97438 * 16 15 13 18 18 N 1.29025 * 124.91360 * 89.72294 * 17 16 15 19 19 C 1.31786 * 117.12209 * 179.81088 * 18 17 16 20 20 C 1.50700 * 122.75086 * 180.22382 * 19 18 17 21 21 C 1.33642 * 114.49875 * 0.47253 * 19 18 17 22 22 S 1.70972 * 124.91682 * 270.02090 * 17 16 15 23 23 H 4.40642 * 5.51345 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.46596 * 192.70518 * 3 2 1 25 25 H 1.08999 * 109.47387 * 72.70672 * 3 2 1 26 26 H 0.97001 * 119.99719 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47033 * 299.99515 * 15 13 4 28 28 H 1.08995 * 109.47719 * 59.99358 * 15 13 4 29 29 H 1.08999 * 109.47389 * 299.99485 * 16 15 13 30 30 H 1.09008 * 109.47489 * 59.99742 * 16 15 13 31 31 H 1.09008 * 109.47113 * 270.24626 * 20 19 18 32 32 H 1.09003 * 109.46998 * 30.23957 * 20 19 18 33 33 H 1.08992 * 109.47345 * 150.24516 * 20 19 18 34 34 H 1.07997 * 126.03539 * 179.78764 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -0.9359 1.0150 5 6 3.4815 -0.4781 2.2599 6 1 4.1250 -1.0706 2.8934 7 6 3.0050 0.7484 2.7067 8 7 1.9238 1.2681 2.1703 9 14 3.9013 1.6583 4.0698 10 1 4.9269 2.5534 3.4763 11 1 2.9288 2.4671 4.8478 12 1 4.5609 0.6776 4.9691 13 6 3.2436 -2.2476 0.7249 14 8 3.6437 -3.0237 1.5669 15 6 2.8630 -2.7507 -0.6436 16 6 3.0796 -4.2638 -0.7091 17 6 2.6984 -4.7671 -2.0775 18 7 3.5021 -4.8526 -3.0832 19 6 3.0055 -5.3194 -4.2112 20 6 3.8312 -5.4772 -5.4619 21 6 1.7084 -5.6366 -4.1563 22 16 1.1366 -5.3007 -2.5239 23 1 -1.0498 0.0000 0.0003 24 1 3.0089 1.0033 0.2260 25 1 3.0096 -0.3047 -0.9812 26 1 1.5910 2.1241 2.4825 27 1 1.8140 -2.5249 -0.8349 28 1 3.4827 -2.2624 -1.3956 29 1 4.1288 -4.4894 -0.5180 30 1 2.4601 -4.7525 0.0430 31 1 3.7840 -4.5585 -6.0468 32 1 4.8667 -5.6820 -5.1903 33 1 3.4401 -6.3049 -6.0535 34 1 1.1157 -6.0299 -4.9689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490964061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:03 Heat of formation + Delta-G solvation = 67.745729 kcal Electronic energy + Delta-G solvation = -18624.169673 eV Core-core repulsion = 15650.982872 eV Total energy + Delta-G solvation = -2973.186801 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.85020 -38.67649 -35.31915 -33.80627 -32.13224 -31.22501 -30.77326 -27.69353 -26.68286 -25.98967 -24.12306 -21.88799 -19.63406 -18.91014 -17.86268 -17.60544 -16.63826 -16.18425 -15.19683 -14.96772 -14.72687 -14.48815 -14.11378 -13.69627 -13.22436 -13.00468 -12.88451 -12.55493 -12.30447 -12.12202 -11.95642 -11.56934 -11.46202 -11.28943 -11.00786 -10.74838 -10.47217 -10.31318 -9.55538 -9.37271 -9.35416 -9.25222 -8.91884 -8.70539 -8.38718 -7.85872 -6.32981 -3.87033 0.74484 1.42356 1.81368 2.80460 3.15497 3.26183 3.30672 3.66755 3.91299 4.04279 4.08417 4.20701 4.82551 5.02582 5.06184 5.14981 5.24364 5.44457 5.45079 5.47447 5.50486 5.59950 5.76323 5.89227 6.02491 6.18013 6.29318 6.39370 6.43619 6.70751 7.01458 7.56763 7.82012 8.05442 8.41752 8.80699 9.12905 9.35090 9.89873 10.67723 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.004142 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.178581 B = 6759.134468 C = 7096.113043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.439 5.439 5 C -0.317 4.317 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.454 3.546 14 O -0.583 6.583 15 C -0.124 4.124 16 C -0.027 4.027 17 C 0.073 3.927 18 N -0.476 5.476 19 C 0.067 3.933 20 C -0.077 4.077 21 C -0.277 4.277 22 S 0.116 5.884 23 H 0.199 0.801 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.268 0.732 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 -7.918 -13.435 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.108 3.892 4 N -0.157 5.157 5 C -0.445 4.445 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.242 3.758 14 O -0.467 6.467 15 C -0.166 4.166 16 C -0.068 4.068 17 C -0.205 4.205 18 N -0.191 5.191 19 C -0.065 4.065 20 C -0.137 4.137 21 C -0.416 4.416 22 S 0.371 5.629 23 H 0.216 0.784 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.277 -8.047 -12.375 14.936 hybrid contribution 0.289 0.649 -0.144 0.725 sum -1.988 -7.398 -12.519 14.677 Atomic orbital electron populations 1.24255 0.95352 1.03519 1.04642 1.23146 0.94333 0.97637 0.96448 1.18222 0.84341 0.96627 0.89993 1.43670 1.55899 1.04354 1.11791 1.19661 1.28374 1.03235 0.93190 0.87820 1.25301 0.94962 0.98241 0.98702 1.70089 1.17833 1.18862 1.42974 0.86022 0.79158 0.79459 0.80672 1.20338 1.21140 1.19378 1.19914 0.84312 0.82473 0.89080 1.90527 1.51333 1.54654 1.50234 1.21542 1.02900 0.94367 0.97840 1.20039 1.04625 0.95382 0.86732 1.27305 0.92443 1.00830 0.99937 1.66179 1.36659 1.17322 0.98943 1.20335 0.91963 0.99331 0.94855 1.20340 0.99328 1.02300 0.91709 1.26740 0.99256 1.14300 1.01318 1.84091 1.15091 1.58956 1.04740 0.78404 0.87587 0.91891 0.92160 0.89972 0.89866 0.88044 0.88948 0.90708 0.90606 0.90971 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.31 19.25 29.55 0.57 -4.74 16 2 C -0.11 -2.53 10.76 -37.12 -0.40 -2.93 16 3 C 0.23 5.07 4.91 -6.83 -0.03 5.04 16 4 N -0.44 -10.96 2.60 -117.93 -0.31 -11.26 16 5 C -0.32 -8.65 9.28 -14.93 -0.14 -8.79 16 6 H 0.10 2.98 7.43 -52.48 -0.39 2.59 16 7 C 0.03 0.84 4.83 -17.47 -0.08 0.76 16 8 N -0.86 -22.46 9.59 55.50 0.53 -21.93 16 9 Si 0.92 20.35 29.60 -169.99 -5.03 15.32 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.45 10.79 7.56 -10.99 -0.08 10.71 16 14 O -0.58 -15.67 15.65 5.54 0.09 -15.58 16 15 C -0.12 -2.30 4.29 -27.89 -0.12 -2.42 16 16 C -0.03 -0.45 5.09 -27.88 -0.14 -0.59 16 17 C 0.07 1.11 6.64 -13.45 -0.09 1.02 16 18 N -0.48 -7.38 10.53 -8.05 -0.08 -7.47 16 19 C 0.07 0.86 6.74 -84.22 -0.57 0.30 16 20 C -0.08 -0.72 10.31 36.01 0.37 -0.34 16 21 C -0.28 -3.16 11.13 29.12 0.32 -2.83 16 22 S 0.12 1.47 23.18 -107.50 -2.49 -1.03 16 23 H 0.20 3.31 7.80 -54.10 -0.42 2.89 16 24 H 0.11 2.44 6.60 -51.93 -0.34 2.10 16 25 H 0.06 1.16 6.69 -51.93 -0.35 0.81 16 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 28 H 0.08 1.43 7.42 -51.93 -0.39 1.05 16 29 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 30 H 0.09 1.54 8.10 -51.92 -0.42 1.12 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -31.30 313.66 -6.90 -38.21 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.94 Total: 3.83 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.39 Total: -4.81 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.14 Total: -40.66 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.30 -6.90 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.951 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds