Wall clock time and date at job start Tue Mar 31 2020 01:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47281 * 312.70355 * 3 2 1 5 5 C 1.37093 * 120.00152 * 263.93139 * 4 3 2 6 6 H 1.08006 * 120.00375 * 199.75369 * 5 4 3 7 7 C 1.38959 * 120.00151 * 19.74787 * 5 4 3 8 8 N 1.31406 * 119.99578 * 21.75160 * 7 5 4 9 9 Si 1.86794 * 120.00202 * 201.74871 * 7 5 4 10 10 H 1.48501 * 109.46881 * 89.99997 * 9 7 5 11 11 H 1.48498 * 109.47249 * 210.00475 * 9 7 5 12 12 H 1.48506 * 109.47310 * 330.00193 * 9 7 5 13 13 C 1.34779 * 119.99828 * 83.92653 * 4 3 2 14 14 O 1.21295 * 119.99881 * 180.27222 * 13 4 3 15 15 C 1.50697 * 120.00017 * 0.02562 * 13 4 3 16 16 C 1.52995 * 109.47108 * 179.97438 * 15 13 4 17 17 C 1.50704 * 109.47129 * 179.97438 * 16 15 13 18 18 N 1.29025 * 124.91360 * 89.72294 * 17 16 15 19 19 C 1.31786 * 117.12209 * 179.81088 * 18 17 16 20 20 C 1.50700 * 122.75086 * 180.22382 * 19 18 17 21 21 C 1.33642 * 114.49875 * 0.47253 * 19 18 17 22 22 S 1.70972 * 124.91682 * 270.02090 * 17 16 15 23 23 H 4.40642 * 5.51345 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.46596 * 192.70518 * 3 2 1 25 25 H 1.08999 * 109.47387 * 72.70672 * 3 2 1 26 26 H 0.97001 * 119.99719 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47033 * 299.99515 * 15 13 4 28 28 H 1.08995 * 109.47719 * 59.99358 * 15 13 4 29 29 H 1.08999 * 109.47389 * 299.99485 * 16 15 13 30 30 H 1.09008 * 109.47489 * 59.99742 * 16 15 13 31 31 H 1.09008 * 109.47113 * 270.24626 * 20 19 18 32 32 H 1.09003 * 109.46998 * 30.23957 * 20 19 18 33 33 H 1.08992 * 109.47345 * 150.24516 * 20 19 18 34 34 H 1.07997 * 126.03539 * 179.78764 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -0.9359 1.0150 5 6 3.4815 -0.4781 2.2599 6 1 4.1250 -1.0706 2.8934 7 6 3.0050 0.7484 2.7067 8 7 1.9238 1.2681 2.1703 9 14 3.9013 1.6583 4.0698 10 1 4.9269 2.5534 3.4763 11 1 2.9288 2.4671 4.8478 12 1 4.5609 0.6776 4.9691 13 6 3.2436 -2.2476 0.7249 14 8 3.6437 -3.0237 1.5669 15 6 2.8630 -2.7507 -0.6436 16 6 3.0796 -4.2638 -0.7091 17 6 2.6984 -4.7671 -2.0775 18 7 3.5021 -4.8526 -3.0832 19 6 3.0055 -5.3194 -4.2112 20 6 3.8312 -5.4772 -5.4619 21 6 1.7084 -5.6366 -4.1563 22 16 1.1366 -5.3007 -2.5239 23 1 -1.0498 0.0000 0.0003 24 1 3.0089 1.0033 0.2260 25 1 3.0096 -0.3047 -0.9812 26 1 1.5910 2.1241 2.4825 27 1 1.8140 -2.5249 -0.8349 28 1 3.4827 -2.2624 -1.3956 29 1 4.1288 -4.4894 -0.5180 30 1 2.4601 -4.7525 0.0430 31 1 3.7840 -4.5585 -6.0468 32 1 4.8667 -5.6820 -5.1903 33 1 3.4401 -6.3049 -6.0535 34 1 1.1157 -6.0299 -4.9689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490964061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:03 Heat of formation + Delta-G solvation = 49.085714 kcal Electronic energy + Delta-G solvation = -18624.978832 eV Core-core repulsion = 15650.982872 eV Total energy + Delta-G solvation = -2973.995960 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95222 -40.44291 -37.17743 -35.15716 -33.96273 -33.01874 -31.92211 -28.63132 -28.33928 -27.55830 -25.82232 -23.12996 -20.73729 -20.58755 -19.66992 -18.71313 -18.38466 -17.86749 -16.69917 -16.47364 -16.08857 -15.90766 -15.69453 -15.09641 -14.60971 -14.33327 -14.05099 -13.96805 -13.59978 -13.51714 -13.44853 -13.19973 -12.89294 -12.69526 -12.46991 -12.18409 -12.17563 -12.10775 -11.16153 -11.07769 -10.67279 -10.60819 -10.39911 -10.31732 -9.81858 -9.61007 -8.30991 -5.93126 -0.27114 0.42318 0.83215 1.37392 1.43710 1.54423 1.79080 1.89659 2.14710 2.33820 2.39477 2.96033 3.05367 3.31615 3.83598 3.90814 4.04637 4.08479 4.25985 4.33149 4.41661 4.51031 4.69237 4.81268 4.82189 4.87701 4.93016 5.02388 5.06956 5.40583 5.42899 5.48660 6.07049 6.44345 6.81477 7.14537 7.16103 7.41753 7.98128 8.67366 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.004142 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.178581 B = 6759.134468 C = 7096.113043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.156 4.156 3 C 0.234 3.766 4 N -0.451 5.451 5 C -0.355 4.355 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.869 5.869 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.443 3.557 14 O -0.625 6.625 15 C -0.106 4.106 16 C -0.017 4.017 17 C 0.042 3.958 18 N -0.498 5.498 19 C 0.042 3.958 20 C -0.075 4.075 21 C -0.258 4.258 22 S 0.140 5.860 23 H 0.233 0.767 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.272 0.728 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -7.863 -15.352 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.157 4.157 3 C 0.111 3.889 4 N -0.169 5.169 5 C -0.482 4.482 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.506 5.506 9 Si 0.807 3.193 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.233 3.767 14 O -0.512 6.512 15 C -0.148 4.148 16 C -0.058 4.058 17 C -0.235 4.235 18 N -0.214 5.214 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.396 4.396 22 S 0.395 5.605 23 H 0.250 0.750 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.641 -7.971 -14.321 16.789 hybrid contribution 0.621 0.590 0.397 0.944 sum -3.020 -7.380 -13.924 16.046 Atomic orbital electron populations 1.25123 0.96305 1.01667 1.02850 1.23378 0.94917 0.99338 0.98102 1.18261 0.84806 0.95248 0.90538 1.43878 1.55915 1.05322 1.11754 1.19563 1.29716 1.04345 0.94587 0.90703 1.25963 0.95234 0.98024 1.00639 1.70174 1.18005 1.18877 1.43539 0.85104 0.78253 0.78024 0.77963 1.19004 1.20341 1.20268 1.20805 0.83155 0.81965 0.90747 1.90485 1.52985 1.55651 1.52090 1.21387 1.03345 0.95563 0.94461 1.19774 1.03602 0.94184 0.88270 1.26867 0.94202 1.03214 0.99241 1.66165 1.37811 1.17564 0.99856 1.20866 0.93138 0.99823 0.95094 1.20441 0.98555 1.03833 0.90553 1.27215 0.98942 1.12209 1.01282 1.83963 1.12949 1.57985 1.05592 0.75020 0.89220 0.88697 0.91828 0.89062 0.88489 0.89731 0.89548 0.89843 0.91334 0.88248 0.77421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.40 19.25 74.32 1.43 -7.97 16 2 C -0.16 -6.78 10.76 31.13 0.33 -6.44 16 3 C 0.23 10.28 4.91 84.57 0.42 10.70 16 4 N -0.45 -23.10 2.60 -645.40 -1.68 -24.78 16 5 C -0.35 -20.01 9.28 84.04 0.78 -19.23 16 6 H 0.08 4.55 7.43 -2.91 -0.02 4.53 16 7 C 0.01 0.28 4.83 84.93 0.41 0.69 16 8 N -0.87 -45.22 9.59 21.67 0.21 -45.01 16 9 Si 0.98 42.05 29.60 68.60 2.03 44.08 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 13 C 0.44 21.76 7.56 87.66 0.66 22.42 16 14 O -0.62 -35.23 15.65 -3.08 -0.05 -35.28 16 15 C -0.11 -3.94 4.29 29.85 0.13 -3.81 16 16 C -0.02 -0.59 5.09 29.85 0.15 -0.43 16 17 C 0.04 1.25 6.64 88.52 0.59 1.84 16 18 N -0.50 -15.00 10.53 -179.40 -1.89 -16.89 16 19 C 0.04 0.99 6.74 41.52 0.28 1.27 16 20 C -0.07 -1.19 10.31 71.24 0.73 -0.45 16 21 C -0.26 -5.03 11.13 66.78 0.74 -4.28 16 22 S 0.14 3.27 23.18 -56.49 -1.31 1.96 16 23 H 0.23 6.98 7.80 -4.43 -0.03 6.95 16 24 H 0.09 4.18 6.60 -2.39 -0.02 4.16 16 25 H 0.10 3.44 6.69 -2.39 -0.02 3.42 16 26 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 27 H 0.09 3.22 7.49 -2.39 -0.02 3.21 16 28 H 0.10 3.31 7.42 -2.39 -0.02 3.29 16 29 H 0.08 3.12 8.10 -2.39 -0.02 3.10 16 30 H 0.09 2.98 8.10 -2.38 -0.02 2.97 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -69.08 313.66 5.08 -63.99 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.11 Total: 17.62 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 6.66 Total: -5.71 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -3.36 Total: -86.68 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.05 Total: -35.28 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.31 Total: 1.96 kcal Total: -69.08 5.08 -63.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.081 kcal (2) G-P(sol) polarization free energy of solvation -69.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds