Wall clock time and date at job start Tue Mar 31 2020 00:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47189 * 234.96903 * 3 2 1 5 5 C 1.33273 * 119.99453 * 96.47638 * 4 3 2 6 6 H 1.08004 * 120.00189 * 157.97489 * 5 4 3 7 7 C 1.46798 * 120.00176 * 337.69015 * 5 4 3 8 8 N 1.29314 * 119.99872 * 356.04606 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 176.04284 * 7 5 4 10 10 H 1.48502 * 109.46750 * 90.00161 * 9 7 5 11 11 H 1.48496 * 109.47365 * 210.00064 * 9 7 5 12 12 H 1.48503 * 109.47167 * 330.00371 * 9 7 5 13 13 C 1.34768 * 120.00290 * 276.47951 * 4 3 2 14 14 O 1.21563 * 120.00110 * 176.20837 * 13 4 3 15 15 C 1.46956 * 119.99876 * 356.20158 * 13 4 3 16 16 C 1.38582 * 126.89951 * 97.74650 * 15 13 4 17 17 N 1.48016 * 127.32359 * 0.02562 * 16 15 13 18 18 O 1.31704 * 119.99528 * 180.02562 * 17 16 15 19 19 O 1.31695 * 120.00183 * 0.02562 * 17 16 15 20 20 C 1.39600 * 105.34634 * 179.97438 * 16 15 13 21 21 N 1.30895 * 107.89723 * 359.97438 * 20 16 15 22 22 N 1.28438 * 110.96142 * 359.71267 * 21 20 16 23 23 C 1.46498 * 125.20630 * 180.28300 * 22 21 20 24 24 H 4.40639 * 5.51400 * 179.97438 * 4 1 2 25 25 H 1.09007 * 109.46956 * 114.97500 * 3 2 1 26 26 H 1.08999 * 109.47442 * 354.97264 * 3 2 1 27 27 H 0.97004 * 119.99517 * 179.97438 * 8 7 5 28 28 H 1.07999 * 126.05098 * 179.97438 * 20 16 15 29 29 H 1.08993 * 109.47116 * 274.82634 * 23 22 21 30 30 H 1.09002 * 109.46789 * 34.82562 * 23 22 21 31 31 H 1.09000 * 109.47598 * 154.82323 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7937 1.1310 5 6 3.4791 0.1904 2.2682 6 1 4.1514 0.6803 2.9570 7 6 2.9405 -1.1373 2.5875 8 7 2.0725 -1.6886 1.8033 9 14 3.5091 -2.0305 4.1265 10 1 2.6232 -1.6714 5.2629 11 1 3.4513 -3.4966 3.8978 12 1 4.9048 -1.6333 4.4422 13 6 3.2339 2.1332 1.0216 14 8 3.5728 2.7979 1.9813 15 6 2.9332 2.7903 -0.2580 16 6 1.7420 3.3982 -0.6216 17 7 0.5123 3.5217 0.1930 18 8 -0.5452 4.1327 -0.2998 19 8 0.4758 3.0207 1.4103 20 6 1.9490 3.8701 -1.9190 21 7 3.1697 3.5557 -2.2715 22 7 3.7746 2.9314 -1.3260 23 6 5.1538 2.4409 -1.3848 24 1 -1.0501 0.0000 -0.0003 25 1 3.0091 0.4348 -0.9316 26 1 3.0098 -1.0229 0.0901 27 1 1.7169 -2.5662 2.0142 28 1 1.2293 4.4008 -2.5246 29 1 5.1701 1.4581 -1.8556 30 1 5.7610 3.1333 -1.9679 31 1 5.5565 2.3666 -0.3746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490986991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:11 Heat of formation + Delta-G solvation = 158.297262 kcal Electronic energy + Delta-G solvation = -22210.970885 eV Core-core repulsion = 18695.417479 eV Total energy + Delta-G solvation = -3515.553406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.87378 -38.79379 -38.01568 -35.45770 -33.74379 -33.56652 -32.55108 -31.65309 -31.14872 -27.93120 -26.77507 -25.96687 -24.95946 -22.17212 -21.46992 -19.71918 -18.23423 -18.08042 -17.32918 -16.90579 -16.80993 -16.36652 -15.45411 -15.07193 -15.01994 -14.41901 -14.22980 -13.96745 -13.11332 -12.94881 -12.87884 -12.63040 -12.42987 -11.82707 -11.34065 -11.22238 -10.78957 -10.71761 -10.55312 -10.41978 -10.01705 -9.71448 -9.61503 -9.50505 -9.32870 -9.08202 -8.86736 -8.38897 -6.80600 -4.04849 0.08241 1.46955 1.64538 2.34882 2.43931 2.91391 3.05878 3.08760 3.29898 3.65262 3.85834 3.93106 4.20058 4.29760 4.61381 4.90220 4.90947 4.98002 5.18306 5.23354 5.31402 5.43006 5.75919 5.96458 6.38648 6.43562 6.51211 6.87620 6.96686 7.39182 7.60739 7.69743 8.08704 8.65124 8.72578 8.91699 9.59226 10.15597 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.007699 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.451617 B = 3635.870149 C = 4143.923386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.131 4.131 3 C 0.224 3.776 4 N -0.374 5.374 5 C -0.343 4.343 6 H 0.115 0.885 7 C 0.048 3.952 8 N -0.817 5.817 9 Si 0.937 3.063 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.262 1.262 13 C 0.455 3.545 14 O -0.557 6.557 15 C 0.134 3.866 16 C -0.104 4.104 17 N 0.028 4.972 18 O -0.213 6.213 19 O -0.139 6.139 20 C 0.078 3.922 21 N -0.282 5.282 22 N -0.272 5.272 23 C 0.084 3.916 24 H 0.202 0.798 25 H 0.047 0.953 26 H 0.130 0.870 27 H 0.284 0.716 28 H 0.206 0.794 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 0.695 -8.318 9.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.133 4.133 3 C 0.101 3.899 4 N -0.087 5.087 5 C -0.472 4.472 6 H 0.133 0.867 7 C -0.167 4.167 8 N -0.449 5.449 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.186 1.186 13 C 0.243 3.757 14 O -0.441 6.441 15 C -0.002 4.002 16 C -0.205 4.205 17 N 0.503 4.497 18 O -0.393 6.393 19 O -0.337 6.337 20 C -0.105 4.105 21 N -0.110 5.110 22 N -0.058 5.058 23 C -0.056 4.056 24 H 0.219 0.781 25 H 0.065 0.935 26 H 0.147 0.853 27 H 0.097 0.903 28 H 0.223 0.777 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.927 0.826 -9.179 10.958 hybrid contribution -1.272 -0.532 1.405 1.968 sum 4.655 0.293 -7.775 9.066 Atomic orbital electron populations 1.24366 0.95445 1.03242 1.02304 1.22835 0.94082 0.98012 0.98332 1.18513 0.85056 0.99431 0.86904 1.42551 1.50926 1.02656 1.12587 1.20654 1.27275 0.99297 0.99967 0.86723 1.27099 0.93686 0.97380 0.98571 1.68970 1.23167 1.16268 1.36522 0.85753 0.80015 0.77506 0.80559 1.19504 1.20473 1.18573 1.16468 0.91864 0.82751 0.84632 1.90698 1.54003 1.62391 1.36962 1.22448 0.89159 0.97261 0.91319 1.20407 0.86713 1.18018 0.95320 1.49108 1.01191 0.97439 1.01982 1.96203 1.22555 1.44541 1.76016 1.96409 1.91463 1.48259 0.97579 1.23496 0.93943 1.00904 0.92116 1.73357 1.07360 1.14501 1.15814 1.46024 1.12587 1.38910 1.08242 1.22420 0.75325 1.01429 1.06392 0.78129 0.93473 0.85295 0.90329 0.77713 0.88669 0.87709 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.09 19.25 29.55 0.57 -4.52 16 2 C -0.13 -2.97 11.53 -37.12 -0.43 -3.40 16 3 C 0.22 4.76 4.91 -6.83 -0.03 4.73 16 4 N -0.37 -8.91 2.51 -117.76 -0.30 -9.21 16 5 C -0.34 -8.61 9.50 -13.47 -0.13 -8.74 16 6 H 0.12 2.99 7.45 -52.48 -0.39 2.60 16 7 C 0.05 1.12 5.39 -15.15 -0.08 1.04 16 8 N -0.82 -19.19 8.95 56.00 0.50 -18.69 16 9 Si 0.94 18.44 29.65 -169.99 -5.04 13.40 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 13 C 0.46 10.94 5.51 -12.73 -0.07 10.87 16 14 O -0.56 -15.37 16.77 5.31 0.09 -15.28 16 15 C 0.13 2.75 4.86 -82.05 -0.40 2.35 16 16 C -0.10 -2.12 7.37 -79.31 -0.58 -2.70 16 17 N 0.03 0.65 4.98 34.27 0.17 0.82 16 18 O -0.21 -4.59 19.83 -31.57 -0.63 -5.22 16 19 O -0.14 -3.61 18.75 -31.56 -0.59 -4.20 16 20 C 0.08 1.26 11.85 -17.44 -0.21 1.05 16 21 N -0.28 -4.39 11.90 30.58 0.36 -4.02 16 22 N -0.27 -4.38 3.60 -63.88 -0.23 -4.61 16 23 C 0.08 0.94 11.21 59.85 0.67 1.61 16 24 H 0.20 3.73 7.80 -54.09 -0.42 3.31 16 25 H 0.05 0.88 6.95 -51.93 -0.36 0.52 16 26 H 0.13 2.77 6.17 -51.93 -0.32 2.45 16 27 H 0.28 6.26 8.26 -40.82 -0.34 5.92 16 28 H 0.21 2.55 8.06 -52.49 -0.42 2.13 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.11 1.27 7.66 -51.93 -0.40 0.87 16 LS Contribution 298.29 15.07 4.50 4.50 Total: -1.00 -32.08 298.29 -4.15 -36.23 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -2.29 Total: 4.00 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -0.69 Total: 2.29 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.51 Total: -35.71 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -1.13 Total: -24.70 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.04 Total: 13.40 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.08 -4.15 -36.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.527 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds