Wall clock time and date at job start Tue Mar 31 2020 00:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47189 * 234.96903 * 3 2 1 5 5 C 1.33273 * 119.99453 * 96.47638 * 4 3 2 6 6 H 1.08004 * 120.00189 * 157.97489 * 5 4 3 7 7 C 1.46798 * 120.00176 * 337.69015 * 5 4 3 8 8 N 1.29314 * 119.99872 * 356.04606 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 176.04284 * 7 5 4 10 10 H 1.48502 * 109.46750 * 90.00161 * 9 7 5 11 11 H 1.48496 * 109.47365 * 210.00064 * 9 7 5 12 12 H 1.48503 * 109.47167 * 330.00371 * 9 7 5 13 13 C 1.34768 * 120.00290 * 276.47951 * 4 3 2 14 14 O 1.21563 * 120.00110 * 176.20837 * 13 4 3 15 15 C 1.46956 * 119.99876 * 356.20158 * 13 4 3 16 16 C 1.38582 * 126.89951 * 97.74650 * 15 13 4 17 17 N 1.48016 * 127.32359 * 0.02562 * 16 15 13 18 18 O 1.31704 * 119.99528 * 180.02562 * 17 16 15 19 19 O 1.31695 * 120.00183 * 0.02562 * 17 16 15 20 20 C 1.39600 * 105.34634 * 179.97438 * 16 15 13 21 21 N 1.30895 * 107.89723 * 359.97438 * 20 16 15 22 22 N 1.28438 * 110.96142 * 359.71267 * 21 20 16 23 23 C 1.46498 * 125.20630 * 180.28300 * 22 21 20 24 24 H 4.40639 * 5.51400 * 179.97438 * 4 1 2 25 25 H 1.09007 * 109.46956 * 114.97500 * 3 2 1 26 26 H 1.08999 * 109.47442 * 354.97264 * 3 2 1 27 27 H 0.97004 * 119.99517 * 179.97438 * 8 7 5 28 28 H 1.07999 * 126.05098 * 179.97438 * 20 16 15 29 29 H 1.08993 * 109.47116 * 274.82634 * 23 22 21 30 30 H 1.09002 * 109.46789 * 34.82562 * 23 22 21 31 31 H 1.09000 * 109.47598 * 154.82323 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7937 1.1310 5 6 3.4791 0.1904 2.2682 6 1 4.1514 0.6803 2.9570 7 6 2.9405 -1.1373 2.5875 8 7 2.0725 -1.6886 1.8033 9 14 3.5091 -2.0305 4.1265 10 1 2.6232 -1.6714 5.2629 11 1 3.4513 -3.4966 3.8978 12 1 4.9048 -1.6333 4.4422 13 6 3.2339 2.1332 1.0216 14 8 3.5728 2.7979 1.9813 15 6 2.9332 2.7903 -0.2580 16 6 1.7420 3.3982 -0.6216 17 7 0.5123 3.5217 0.1930 18 8 -0.5452 4.1327 -0.2998 19 8 0.4758 3.0207 1.4103 20 6 1.9490 3.8701 -1.9190 21 7 3.1697 3.5557 -2.2715 22 7 3.7746 2.9314 -1.3260 23 6 5.1538 2.4409 -1.3848 24 1 -1.0501 0.0000 -0.0003 25 1 3.0091 0.4348 -0.9316 26 1 3.0098 -1.0229 0.0901 27 1 1.7169 -2.5662 2.0142 28 1 1.2293 4.4008 -2.5246 29 1 5.1701 1.4581 -1.8556 30 1 5.7610 3.1333 -1.9679 31 1 5.5565 2.3666 -0.3746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490986991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:10 Heat of formation + Delta-G solvation = 136.985465 kcal Electronic energy + Delta-G solvation = -22211.895034 eV Core-core repulsion = 18695.417479 eV Total energy + Delta-G solvation = -3516.477555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.28397 -40.59251 -39.74698 -37.32314 -35.42636 -34.91845 -34.35795 -33.41653 -32.68165 -29.33180 -28.48150 -27.43437 -26.72495 -23.81663 -22.91033 -21.26253 -20.02185 -19.71683 -19.04799 -18.51949 -18.43330 -17.82347 -17.16527 -16.66216 -16.59120 -16.06433 -15.90029 -15.46106 -14.76590 -14.38276 -14.20755 -13.95518 -13.83957 -13.56554 -12.96214 -12.73584 -12.59832 -12.52297 -12.13133 -12.11078 -11.82130 -11.48815 -11.35108 -10.97438 -10.86352 -10.83864 -10.61476 -10.21989 -8.60642 -5.97023 -1.64830 -0.09163 0.15617 0.91138 1.02010 1.29696 1.41425 1.52267 1.61599 1.96407 2.15924 2.23983 2.61808 2.83440 2.89084 3.37292 3.49318 3.63121 3.78495 4.13600 4.17808 4.30607 4.38111 4.48121 4.78502 4.82640 5.09143 5.12828 5.21950 5.63599 5.74252 6.23266 6.32448 6.86532 6.94839 7.09099 7.76071 8.34456 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.007699 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.451617 B = 3635.870149 C = 4143.923386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.158 4.158 3 C 0.228 3.772 4 N -0.377 5.377 5 C -0.385 4.385 6 H 0.091 0.909 7 C 0.022 3.978 8 N -0.828 5.828 9 Si 0.997 3.003 10 H -0.282 1.282 11 H -0.259 1.259 12 H -0.259 1.259 13 C 0.454 3.546 14 O -0.610 6.610 15 C 0.112 3.888 16 C -0.123 4.123 17 N 0.034 4.966 18 O -0.151 6.151 19 O -0.251 6.251 20 C 0.095 3.905 21 N -0.259 5.259 22 N -0.250 5.250 23 C 0.067 3.933 24 H 0.225 0.775 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.291 0.709 28 H 0.249 0.751 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 0.655 -11.090 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.159 4.159 3 C 0.106 3.894 4 N -0.088 5.088 5 C -0.514 4.514 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.459 5.459 9 Si 0.819 3.181 10 H -0.208 1.208 11 H -0.183 1.183 12 H -0.182 1.182 13 C 0.243 3.757 14 O -0.498 6.498 15 C -0.027 4.027 16 C -0.225 4.225 17 N 0.504 4.496 18 O -0.353 6.353 19 O -0.421 6.421 20 C -0.086 4.086 21 N -0.088 5.088 22 N -0.035 5.035 23 C -0.070 4.070 24 H 0.242 0.758 25 H 0.092 0.908 26 H 0.143 0.857 27 H 0.104 0.896 28 H 0.265 0.735 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.211 0.623 -11.785 13.336 hybrid contribution -1.382 -0.352 1.950 2.416 sum 4.829 0.272 -9.834 10.959 Atomic orbital electron populations 1.25063 0.96364 1.02541 1.01558 1.23260 0.94870 0.98700 0.99053 1.18562 0.84684 0.99043 0.87091 1.42621 1.50362 1.02992 1.12858 1.20597 1.29233 1.00653 1.00936 0.89170 1.27776 0.93413 0.97070 1.00936 1.69017 1.22926 1.16601 1.37322 0.84888 0.79319 0.77300 0.76592 1.20764 1.18251 1.18248 1.16720 0.90800 0.82627 0.85560 1.90637 1.56221 1.63580 1.39351 1.21876 0.90524 0.98776 0.91525 1.20829 0.85836 1.19187 0.96599 1.49358 1.01820 0.96566 1.01876 1.96135 1.23009 1.41111 1.75059 1.96455 1.92493 1.53697 0.99457 1.24201 0.94502 0.99687 0.90258 1.73463 1.07011 1.13634 1.14647 1.46442 1.13348 1.37114 1.06620 1.22970 0.73156 1.04008 1.06877 0.75816 0.90766 0.85737 0.89619 0.73530 0.85842 0.83758 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.21 19.25 74.32 1.43 -8.78 16 2 C -0.16 -7.15 11.53 31.13 0.36 -6.79 16 3 C 0.23 9.77 4.91 84.57 0.42 10.19 16 4 N -0.38 -18.60 2.51 -644.77 -1.62 -20.22 16 5 C -0.39 -20.34 9.50 86.71 0.82 -19.51 16 6 H 0.09 5.07 7.45 -2.91 -0.02 5.05 16 7 C 0.02 1.06 5.39 87.30 0.47 1.53 16 8 N -0.83 -39.14 8.95 23.26 0.21 -38.93 16 9 Si 1.00 38.28 29.65 68.60 2.03 40.31 16 10 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 12 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 13 C 0.45 22.70 5.51 86.53 0.48 23.17 16 14 O -0.61 -35.86 16.77 -3.91 -0.07 -35.93 16 15 C 0.11 4.51 4.86 40.75 0.20 4.71 16 16 C -0.12 -4.83 7.37 36.79 0.27 -4.56 16 17 N 0.03 1.56 4.98 -45.49 -0.23 1.33 16 18 O -0.15 -6.16 19.83 3.51 0.07 -6.09 16 19 O -0.25 -13.69 18.75 3.52 0.07 -13.62 16 20 C 0.09 2.68 11.85 85.16 1.01 3.69 16 21 N -0.26 -6.99 11.90 -57.17 -0.68 -7.67 16 22 N -0.25 -7.41 3.60 -356.02 -1.28 -8.69 16 23 C 0.07 1.31 11.21 127.77 1.43 2.74 16 24 H 0.23 8.12 7.80 -4.41 -0.03 8.09 16 25 H 0.07 2.69 6.95 -2.38 -0.02 2.67 16 26 H 0.13 5.39 6.17 -2.39 -0.01 5.37 16 27 H 0.29 12.72 8.26 -92.71 -0.77 11.95 16 28 H 0.25 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 2.18 7.66 -2.39 -0.02 2.16 16 Total: -1.00 -74.16 298.29 6.58 -67.58 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.19 Total: 15.54 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 6.89 Total: 6.40 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -3.60 Total: -74.18 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: 0.07 Total: -55.64 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -74.16 6.58 -67.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.564 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds