Wall clock time and date at job start Tue Mar 31 2020 00:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47216 * 268.39269 * 3 2 1 5 5 C 1.33320 * 119.99897 * 263.09171 * 4 3 2 6 6 H 1.08003 * 119.99760 * 205.80732 * 5 4 3 7 7 C 1.46782 * 120.00251 * 25.80020 * 5 4 3 8 8 N 1.29319 * 120.00038 * 5.47229 * 7 5 4 9 9 Si 1.86801 * 120.00148 * 185.46391 * 7 5 4 10 10 H 1.48496 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46817 * 120.00330 * 9 7 5 12 12 H 1.48493 * 109.47505 * 240.00292 * 9 7 5 13 13 C 1.34773 * 119.99743 * 83.08455 * 4 3 2 14 14 O 1.21492 * 120.00566 * 355.47233 * 13 4 3 15 15 C 1.47554 * 119.99606 * 175.74273 * 13 4 3 16 16 N 1.31880 * 126.47521 * 5.98581 * 15 13 4 17 17 N 1.28474 * 110.09918 * 179.97438 * 16 15 13 18 18 C 1.46497 * 124.92917 * 180.02562 * 17 16 15 19 19 C 1.35606 * 110.13222 * 0.02562 * 17 16 15 20 20 C 1.35331 * 107.17381 * 359.76056 * 19 17 16 21 21 N 1.48016 * 127.23411 * 180.22132 * 20 19 17 22 22 O 1.31702 * 119.99474 * 0.16766 * 21 20 19 23 23 O 1.31698 * 120.00198 * 180.16495 * 21 20 19 24 24 H 4.40643 * 5.51415 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46686 * 148.39878 * 3 2 1 26 26 H 1.08997 * 109.47168 * 28.39450 * 3 2 1 27 27 H 0.96999 * 120.00206 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.47046 * 89.97662 * 18 17 16 29 29 H 1.08996 * 109.47049 * 209.97166 * 18 17 16 30 30 H 1.08995 * 109.47561 * 329.97982 * 18 17 16 31 31 H 1.08001 * 126.41122 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0396 1.3807 5 6 3.4869 1.2019 1.9305 6 1 4.2064 1.2221 2.7357 7 6 2.8975 2.4540 1.4414 8 7 1.9596 2.4229 0.5516 9 14 3.5019 4.0925 2.1044 10 1 4.5732 3.8566 3.1053 11 1 4.0397 4.9103 0.9876 12 1 2.3736 4.8131 2.7469 13 6 3.2269 -1.0995 2.0951 14 8 2.8289 -2.1462 1.6239 15 6 3.8064 -1.0743 3.4518 16 7 4.1692 -0.0027 4.1296 17 7 4.6340 -0.3431 5.2779 18 6 5.1298 0.5903 6.2923 19 6 4.5989 -1.6918 5.4146 20 6 4.0731 -2.1954 4.2738 21 7 3.8305 -3.6197 3.9520 22 8 4.1341 -4.5539 4.8293 23 8 3.3111 -3.9527 2.7885 24 1 -1.0500 -0.0002 0.0000 25 1 3.0088 0.8761 -0.5385 26 1 3.0097 -0.9032 -0.4887 27 1 1.5703 3.2503 0.2281 28 1 4.3089 0.8874 6.9450 29 1 5.9067 0.1055 6.8835 30 1 5.5427 1.4727 5.8034 31 1 4.9250 -2.2577 6.2747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490994171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:56 Heat of formation + Delta-G solvation = 170.377747 kcal Electronic energy + Delta-G solvation = -21661.760596 eV Core-core repulsion = 18146.731039 eV Total energy + Delta-G solvation = -3515.029557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.71127 -38.54921 -37.89058 -35.12025 -33.54860 -33.38959 -32.16112 -31.79894 -30.93719 -28.00714 -26.66221 -25.68521 -24.45337 -21.97053 -21.12806 -19.50506 -18.66055 -17.50519 -17.14929 -16.82952 -16.49634 -16.04268 -15.76894 -14.92024 -14.68625 -14.42804 -14.03769 -13.50044 -13.13535 -12.97230 -12.74401 -12.11950 -12.08949 -11.83771 -11.45002 -11.28488 -10.62181 -10.57793 -10.37540 -10.02432 -9.86185 -9.53884 -9.42643 -9.25486 -9.09443 -8.71849 -8.46596 -8.13805 -6.69188 -3.88005 0.18167 1.62764 1.82017 2.28236 2.58807 2.95647 3.02751 3.06402 3.72223 3.94296 4.18854 4.27540 4.35089 4.43418 4.67766 4.83242 4.89827 5.03859 5.16095 5.27395 5.60365 5.67005 6.12992 6.45547 6.57503 6.70315 6.77997 7.09109 7.13461 7.55913 7.57160 7.94560 8.33263 8.73357 8.96238 9.37823 9.84970 10.26417 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.008124 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.935053 B = 3445.931700 C = 4965.975933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.100 4.100 3 C 0.237 3.763 4 N -0.384 5.384 5 C -0.358 4.358 6 H 0.137 0.863 7 C 0.044 3.956 8 N -0.811 5.811 9 Si 0.929 3.071 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.479 3.521 14 O -0.557 6.557 15 C 0.096 3.904 16 N -0.233 5.233 17 N -0.286 5.286 18 C 0.087 3.913 19 C 0.068 3.932 20 C -0.089 4.089 21 N 0.013 4.987 22 O -0.256 6.256 23 O -0.082 6.082 24 H 0.198 0.802 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.281 0.719 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 3.075 8.574 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.101 4.101 3 C 0.115 3.885 4 N -0.099 5.099 5 C -0.491 4.491 6 H 0.154 0.846 7 C -0.172 4.172 8 N -0.443 5.443 9 Si 0.755 3.245 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.268 3.732 14 O -0.440 6.440 15 C -0.066 4.066 16 N -0.066 5.066 17 N -0.070 5.070 18 C -0.053 4.053 19 C -0.083 4.083 20 C -0.190 4.190 21 N 0.488 4.512 22 O -0.424 6.424 23 O -0.292 6.292 24 H 0.215 0.785 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.912 4.463 8.580 11.335 hybrid contribution -0.205 -0.086 0.525 0.570 sum 5.707 4.377 9.105 11.603 Atomic orbital electron populations 1.24191 0.95330 1.07218 1.01943 1.22939 0.94156 0.94640 0.98369 1.18279 0.84583 1.01653 0.83974 1.42625 1.51179 1.06393 1.09726 1.21546 1.24465 0.82169 1.20887 0.84627 1.27086 0.94057 1.00463 0.95575 1.69031 1.20327 1.29918 1.25057 0.85822 0.79107 0.80329 0.79287 1.18594 1.20307 1.20456 1.16731 0.87758 0.85719 0.82989 1.90856 1.53931 1.30192 1.69056 1.22421 1.00692 0.85676 0.97761 1.74682 1.15861 1.23533 0.92515 1.46035 1.42946 1.04559 1.13447 1.22293 1.00824 0.93229 0.88946 1.22529 1.00859 0.85663 0.99265 1.20112 1.18864 0.81161 0.98868 1.49251 0.97808 1.01865 1.02319 1.96188 1.60682 1.42213 1.43340 1.96474 1.40481 1.88918 1.03363 0.78492 0.87141 0.90956 0.90655 0.89152 0.88390 0.87668 0.78362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.08 19.25 29.55 0.57 -5.51 16 2 C -0.10 -2.44 11.38 -37.12 -0.42 -2.86 16 3 C 0.24 5.65 5.02 -6.83 -0.03 5.61 16 4 N -0.38 -9.65 2.51 -117.55 -0.30 -9.95 16 5 C -0.36 -8.68 8.97 -13.45 -0.12 -8.80 16 6 H 0.14 3.17 4.91 -52.48 -0.26 2.92 16 7 C 0.04 1.01 5.34 -15.16 -0.08 0.93 16 8 N -0.81 -19.41 9.12 56.00 0.51 -18.90 16 9 Si 0.93 17.79 29.65 -169.99 -5.04 12.75 16 10 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 11 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 13 C 0.48 12.32 7.53 -12.46 -0.09 12.23 16 14 O -0.56 -15.52 12.95 -19.36 -0.25 -15.77 16 15 C 0.10 2.16 6.85 -82.78 -0.57 1.59 16 16 N -0.23 -4.55 8.53 33.41 0.28 -4.26 16 17 N -0.29 -4.08 3.71 -67.99 -0.25 -4.33 16 18 C 0.09 0.67 11.32 59.85 0.68 1.35 16 19 C 0.07 1.00 11.26 -16.92 -0.19 0.81 16 20 C -0.09 -1.81 7.31 -79.72 -0.58 -2.39 16 21 N 0.01 0.30 4.98 34.07 0.17 0.47 16 22 O -0.26 -5.47 19.81 -31.57 -0.63 -6.09 16 23 O -0.08 -2.08 16.16 -40.07 -0.65 -2.73 16 24 H 0.20 3.67 7.80 -54.09 -0.42 3.25 16 25 H 0.11 2.58 6.48 -51.93 -0.34 2.24 16 26 H 0.07 1.65 7.71 -51.93 -0.40 1.25 16 27 H 0.28 6.29 8.26 -40.82 -0.34 5.95 16 28 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.10 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -33.26 290.60 -4.85 -38.11 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.24 Total: 3.36 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.85 Total: 2.97 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.42 Total: -36.97 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.52 Total: -24.59 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.04 Total: 12.75 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.26 -4.85 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.487 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds