Wall clock time and date at job start Tue Mar 31 2020 01:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30948 * 123.08686 * 2 1 4 4 C 1.29355 * 117.49981 * 180.30658 * 3 2 1 5 5 S 1.70912 * 110.66549 * 359.72325 * 4 3 2 6 6 C 1.37150 * 123.08179 * 179.80242 * 2 1 3 7 7 C 1.41650 * 126.19548 * 0.02562 * 6 2 1 8 8 C 1.35709 * 119.99561 * 248.51051 * 7 6 2 9 9 C 1.41350 * 120.00574 * 6.75129 * 8 7 6 10 10 O 1.21833 * 119.99649 * 7.21155 * 9 8 7 11 11 N 1.34777 * 119.99894 * 187.21959 * 9 8 7 12 12 C 1.36772 * 119.99834 * 175.73598 * 11 9 8 13 13 H 1.08002 * 119.99707 * 31.89485 * 12 11 9 14 14 C 1.39053 * 120.00213 * 211.89318 * 12 11 9 15 15 N 1.31363 * 120.00315 * 20.17500 * 14 12 11 16 16 Si 1.86802 * 119.99997 * 200.17898 * 14 12 11 17 17 H 1.48506 * 109.47226 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46843 * 119.99744 * 16 14 12 19 19 H 1.48495 * 109.47271 * 239.99952 * 16 14 12 20 20 C 1.46502 * 120.00184 * 355.73668 * 11 9 8 21 21 C 1.53000 * 117.49891 * 307.53908 * 20 11 9 22 22 C 1.52997 * 117.49684 * 238.87931 * 20 11 9 23 23 H 1.08995 * 109.46804 * 270.19604 * 1 2 3 24 24 H 1.08996 * 109.46683 * 30.19512 * 1 2 3 25 25 H 1.08999 * 109.47079 * 150.19065 * 1 2 3 26 26 H 1.08007 * 124.66702 * 179.70373 * 4 3 2 27 27 H 1.07994 * 119.99824 * 68.78893 * 7 6 2 28 28 H 1.08001 * 119.99637 * 186.74482 * 8 7 6 29 29 H 0.96993 * 120.00509 * 180.02562 * 15 14 12 30 30 H 1.08996 * 115.54754 * 93.21159 * 20 11 9 31 31 H 1.09001 * 117.49738 * 0.02562 * 21 20 11 32 32 H 1.08996 * 117.49659 * 145.01801 * 21 20 11 33 33 H 1.08995 * 117.50134 * 214.97489 * 22 20 11 34 34 H 1.09001 * 117.50066 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2219 1.0971 0.0000 4 6 3.5093 0.9712 -0.0061 5 16 3.9539 -0.6791 -0.0052 6 6 2.2557 -1.1492 0.0040 7 6 1.7544 -2.4740 0.0080 8 6 1.9167 -3.2574 1.1042 9 6 2.4564 -2.7102 2.2905 10 8 2.6534 -1.5108 2.3734 11 7 2.7533 -3.5154 3.3298 12 6 3.3559 -2.9997 4.4440 13 1 3.1502 -1.9839 4.7479 14 6 4.2333 -3.7831 5.1856 15 7 4.7927 -4.8390 4.6399 16 14 4.6166 -3.3341 6.9578 17 1 3.8634 -2.1103 7.3325 18 1 4.2174 -4.4527 7.8493 19 1 6.0731 -3.0827 7.1009 20 6 2.4305 -4.9430 3.2659 21 6 0.9933 -5.3270 2.9083 22 6 1.4995 -5.5055 4.3419 23 1 -0.3633 0.0035 1.0276 24 1 -0.3632 0.8882 -0.5169 25 1 -0.3633 -0.8917 -0.5109 26 1 4.2072 1.7955 -0.0115 27 1 1.2472 -2.8621 -0.8628 28 1 1.6332 -4.2990 1.0702 29 1 5.4044 -5.3857 5.1572 30 1 3.2294 -5.5898 2.9033 31 1 0.2881 -4.5175 2.7201 32 1 0.8467 -6.2267 2.3107 33 1 1.6855 -6.5226 4.6868 34 1 1.1275 -4.8136 5.0975 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492663875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:18 Heat of formation + Delta-G solvation = 74.018888 kcal Electronic energy + Delta-G solvation = -19502.115207 eV Core-core repulsion = 16529.200431 eV Total energy + Delta-G solvation = -2972.914776 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.45033 -38.75480 -36.32554 -33.89732 -32.91878 -31.17442 -30.54048 -27.34847 -25.25267 -24.26253 -22.52104 -21.63336 -21.22859 -19.14326 -17.93229 -17.13150 -16.98846 -16.19842 -15.36350 -14.90751 -14.55075 -14.11639 -13.98210 -13.31148 -13.15628 -12.99235 -12.75559 -12.39874 -12.12978 -12.06140 -11.73043 -11.24529 -11.14386 -10.99636 -10.93078 -10.61304 -10.38947 -9.89253 -9.71238 -9.31756 -9.03813 -8.94062 -8.53307 -8.14050 -7.66161 -7.54591 -6.44464 -3.94037 1.05438 1.72718 2.27488 2.63153 3.12642 3.21345 3.27873 3.39787 4.06378 4.40077 4.49661 4.72154 4.80194 5.08081 5.47812 5.53691 5.60935 5.63990 5.66646 5.78138 5.93730 5.96607 6.08099 6.13499 6.22498 6.27851 6.46998 6.70599 6.71714 6.72888 6.90108 7.07329 7.48634 8.14057 8.35756 8.44738 9.14041 9.32875 9.96952 10.61061 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.006343 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.392088 B = 4413.293063 C = 5112.410988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.469 5.469 4 C -0.020 4.020 5 S 0.166 5.834 6 C -0.138 4.138 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.464 3.536 10 O -0.572 6.572 11 N -0.404 5.404 12 C -0.304 4.304 13 H 0.097 0.903 14 C 0.045 3.955 15 N -0.856 5.856 16 Si 0.914 3.086 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.111 3.889 21 C -0.213 4.213 22 C -0.166 4.166 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.186 0.814 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.269 0.731 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 -0.478 -7.957 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 N -0.182 5.182 4 C -0.314 4.314 5 S 0.424 5.576 6 C -0.259 4.259 7 C -0.094 4.094 8 C -0.169 4.169 9 C 0.257 3.743 10 O -0.457 6.457 11 N -0.121 5.121 12 C -0.432 4.432 13 H 0.115 0.885 14 C -0.161 4.161 15 N -0.492 5.492 16 Si 0.740 3.260 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.206 1.206 20 C 0.006 3.994 21 C -0.251 4.251 22 C -0.204 4.204 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.203 0.797 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.707 0.064 -7.831 8.664 hybrid contribution -0.466 -0.149 1.226 1.320 sum -4.172 -0.084 -6.605 7.813 Atomic orbital electron populations 1.20160 0.87916 1.01967 1.02415 1.20572 0.97146 0.85575 1.04941 1.65644 1.05032 1.32119 1.15452 1.27892 0.95061 1.00109 1.08386 1.83695 1.07235 1.02534 1.64182 1.23209 0.95467 0.98144 1.09113 1.20232 0.99970 0.90884 0.98296 1.22895 0.99351 1.00234 0.94440 1.16841 0.86001 0.87495 0.83982 1.90764 1.58480 1.14386 1.82116 1.43083 1.50060 1.04892 1.14094 1.19490 1.22401 1.00183 1.01152 0.88544 1.25331 0.94466 0.96256 1.00071 1.69927 1.26268 1.16921 1.36079 0.86064 0.78375 0.78869 0.82665 1.19107 1.20461 1.20643 1.21456 0.90304 0.85447 1.02210 1.23503 0.98896 1.02883 0.99805 1.22951 1.04046 1.01467 0.91961 0.91193 0.91562 0.91416 0.79722 0.85150 0.85243 0.92129 0.86527 0.89134 0.88929 0.89417 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.09 36.01 0.36 -0.63 16 2 C 0.05 0.99 6.80 -83.36 -0.57 0.42 16 3 N -0.47 -9.05 10.49 -11.21 -0.12 -9.17 16 4 C -0.02 -0.35 12.20 51.72 0.63 0.28 16 5 S 0.17 3.04 21.78 -107.50 -2.34 0.70 16 6 C -0.14 -2.60 3.70 -38.68 -0.14 -2.74 16 7 C -0.07 -1.19 9.12 -39.19 -0.36 -1.55 16 8 C -0.14 -2.72 8.44 -39.30 -0.33 -3.05 16 9 C 0.46 11.07 7.16 -15.08 -0.11 10.96 16 10 O -0.57 -15.23 12.73 5.07 0.06 -15.17 16 11 N -0.40 -9.94 2.87 -111.03 -0.32 -10.26 16 12 C -0.30 -8.22 8.84 -15.05 -0.13 -8.36 16 13 H 0.10 2.79 7.60 -52.49 -0.40 2.39 16 14 C 0.05 1.17 5.04 -17.45 -0.09 1.08 16 15 N -0.86 -22.12 11.81 55.50 0.66 -21.46 16 16 Si 0.91 20.24 29.60 -169.99 -5.03 15.21 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.11 2.33 3.73 -67.93 -0.25 2.08 16 21 C -0.21 -3.51 7.94 -26.69 -0.21 -3.72 16 22 C -0.17 -3.11 10.12 -26.69 -0.27 -3.38 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 26 H 0.19 2.55 8.06 -52.48 -0.42 2.12 16 27 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.13 2.11 5.34 -52.49 -0.28 1.83 16 29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.12 2.59 7.59 -51.93 -0.39 2.19 16 31 H 0.09 1.51 7.54 -51.93 -0.39 1.11 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -31.14 304.64 -7.92 -39.07 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.96 Total: 5.11 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.47 Total: -8.61 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.22 Total: -40.89 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.06 Total: -15.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.34 Total: 0.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.14 -7.92 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492663875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.086 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds