Wall clock time and date at job start Tue Mar 31 2020 01:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30948 * 123.08686 * 2 1 4 4 C 1.29355 * 117.49981 * 180.30658 * 3 2 1 5 5 S 1.70912 * 110.66549 * 359.72325 * 4 3 2 6 6 C 1.37150 * 123.08179 * 179.80242 * 2 1 3 7 7 C 1.41650 * 126.19548 * 0.02562 * 6 2 1 8 8 C 1.35709 * 119.99561 * 248.51051 * 7 6 2 9 9 C 1.41350 * 120.00574 * 6.75129 * 8 7 6 10 10 O 1.21833 * 119.99649 * 7.21155 * 9 8 7 11 11 N 1.34777 * 119.99894 * 187.21959 * 9 8 7 12 12 C 1.36772 * 119.99834 * 175.73598 * 11 9 8 13 13 H 1.08002 * 119.99707 * 31.89485 * 12 11 9 14 14 C 1.39053 * 120.00213 * 211.89318 * 12 11 9 15 15 N 1.31363 * 120.00315 * 20.17500 * 14 12 11 16 16 Si 1.86802 * 119.99997 * 200.17898 * 14 12 11 17 17 H 1.48506 * 109.47226 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46843 * 119.99744 * 16 14 12 19 19 H 1.48495 * 109.47271 * 239.99952 * 16 14 12 20 20 C 1.46502 * 120.00184 * 355.73668 * 11 9 8 21 21 C 1.53000 * 117.49891 * 307.53908 * 20 11 9 22 22 C 1.52997 * 117.49684 * 238.87931 * 20 11 9 23 23 H 1.08995 * 109.46804 * 270.19604 * 1 2 3 24 24 H 1.08996 * 109.46683 * 30.19512 * 1 2 3 25 25 H 1.08999 * 109.47079 * 150.19065 * 1 2 3 26 26 H 1.08007 * 124.66702 * 179.70373 * 4 3 2 27 27 H 1.07994 * 119.99824 * 68.78893 * 7 6 2 28 28 H 1.08001 * 119.99637 * 186.74482 * 8 7 6 29 29 H 0.96993 * 120.00509 * 180.02562 * 15 14 12 30 30 H 1.08996 * 115.54754 * 93.21159 * 20 11 9 31 31 H 1.09001 * 117.49738 * 0.02562 * 21 20 11 32 32 H 1.08996 * 117.49659 * 145.01801 * 21 20 11 33 33 H 1.08995 * 117.50134 * 214.97489 * 22 20 11 34 34 H 1.09001 * 117.50066 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2219 1.0971 0.0000 4 6 3.5093 0.9712 -0.0061 5 16 3.9539 -0.6791 -0.0052 6 6 2.2557 -1.1492 0.0040 7 6 1.7544 -2.4740 0.0080 8 6 1.9167 -3.2574 1.1042 9 6 2.4564 -2.7102 2.2905 10 8 2.6534 -1.5108 2.3734 11 7 2.7533 -3.5154 3.3298 12 6 3.3559 -2.9997 4.4440 13 1 3.1502 -1.9839 4.7479 14 6 4.2333 -3.7831 5.1856 15 7 4.7927 -4.8390 4.6399 16 14 4.6166 -3.3341 6.9578 17 1 3.8634 -2.1103 7.3325 18 1 4.2174 -4.4527 7.8493 19 1 6.0731 -3.0827 7.1009 20 6 2.4305 -4.9430 3.2659 21 6 0.9933 -5.3270 2.9083 22 6 1.4995 -5.5055 4.3419 23 1 -0.3633 0.0035 1.0276 24 1 -0.3632 0.8882 -0.5169 25 1 -0.3633 -0.8917 -0.5109 26 1 4.2072 1.7955 -0.0115 27 1 1.2472 -2.8621 -0.8628 28 1 1.6332 -4.2990 1.0702 29 1 5.4044 -5.3857 5.1572 30 1 3.2294 -5.5898 2.9033 31 1 0.2881 -4.5175 2.7201 32 1 0.8467 -6.2267 2.3107 33 1 1.6855 -6.5226 4.6868 34 1 1.1275 -4.8136 5.0975 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492663875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:18 Heat of formation + Delta-G solvation = 54.911634 kcal Electronic energy + Delta-G solvation = -19502.943760 eV Core-core repulsion = 16529.200431 eV Total energy + Delta-G solvation = -2973.743329 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.03916 -40.28468 -37.96466 -35.50243 -34.62210 -32.99705 -31.90778 -28.84213 -26.96871 -25.69697 -24.07315 -23.14139 -22.76424 -20.70144 -19.43126 -18.84254 -18.54706 -17.74863 -17.12066 -16.47560 -16.12010 -15.69755 -15.55855 -14.97760 -14.69981 -14.36114 -14.32993 -13.92287 -13.43766 -13.37303 -13.26144 -12.93834 -12.90973 -12.58731 -12.29605 -12.28731 -12.16101 -11.51517 -11.29207 -10.84543 -10.76138 -10.44547 -10.11862 -9.67612 -9.45045 -9.09636 -8.35538 -5.95206 -0.37794 0.30989 0.85885 1.18629 1.36709 1.38119 1.49964 1.97400 2.26238 2.62185 2.97458 3.12027 3.22382 3.51080 4.07609 4.14940 4.19395 4.29843 4.37692 4.38542 4.54423 4.73682 4.79251 4.81788 4.90867 5.01642 5.04121 5.25916 5.33515 5.35354 5.44759 5.49056 5.58535 6.17641 6.59005 6.93496 7.23145 7.51226 8.14013 8.68780 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.006343 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.392088 B = 4413.293063 C = 5112.410988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.041 3.959 3 N -0.493 5.493 4 C -0.014 4.014 5 S 0.145 5.855 6 C -0.166 4.166 7 C -0.033 4.033 8 C -0.170 4.170 9 C 0.460 3.540 10 O -0.611 6.611 11 N -0.422 5.422 12 C -0.338 4.338 13 H 0.059 0.941 14 C 0.019 3.981 15 N -0.875 5.875 16 Si 0.968 3.032 17 H -0.278 1.278 18 H -0.263 1.263 19 H -0.278 1.278 20 C 0.082 3.918 21 C -0.167 4.167 22 C -0.172 4.172 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.218 0.782 27 H 0.183 0.817 28 H 0.159 0.841 29 H 0.273 0.727 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -1.547 -9.366 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 N -0.207 5.207 4 C -0.308 4.308 5 S 0.403 5.597 6 C -0.287 4.287 7 C -0.056 4.056 8 C -0.194 4.194 9 C 0.254 3.746 10 O -0.500 6.500 11 N -0.139 5.139 12 C -0.466 4.466 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.511 5.511 16 Si 0.792 3.208 17 H -0.202 1.202 18 H -0.188 1.188 19 H -0.204 1.204 20 C -0.023 4.023 21 C -0.205 4.205 22 C -0.210 4.210 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.234 0.766 27 H 0.200 0.800 28 H 0.176 0.824 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.053 -1.037 -9.246 10.588 hybrid contribution -0.055 0.356 1.519 1.561 sum -5.108 -0.681 -7.727 9.288 Atomic orbital electron populations 1.20278 0.85667 1.04171 1.02258 1.21169 0.98798 0.85353 1.04005 1.65724 1.05713 1.32655 1.16594 1.28499 0.95222 1.00537 1.06564 1.83740 1.07841 1.03653 1.64463 1.23584 0.95498 0.99343 1.10288 1.20836 0.96580 0.89309 0.98826 1.22788 1.01818 1.01888 0.92947 1.17667 0.84747 0.87059 0.85153 1.90724 1.59881 1.16227 1.83147 1.43187 1.50515 1.06450 1.13749 1.19225 1.24512 0.99389 1.03458 0.92279 1.25858 0.93882 0.96180 1.02704 1.69976 1.26613 1.17482 1.37010 0.85281 0.77904 0.78536 0.79078 1.20237 1.18778 1.20362 1.21393 0.92215 0.83354 1.05319 1.23577 0.94954 1.03938 0.97999 1.22961 1.03747 1.01573 0.92697 0.92319 0.90143 0.88585 0.76599 0.80027 0.82356 0.91757 0.88207 0.88938 0.84714 0.87819 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 10.09 71.24 0.72 -1.10 16 2 C 0.04 1.49 6.80 42.44 0.29 1.78 16 3 N -0.49 -18.54 10.49 -189.38 -1.99 -20.53 16 4 C -0.01 -0.48 12.20 130.61 1.59 1.12 16 5 S 0.15 5.28 21.78 -56.49 -1.23 4.05 16 6 C -0.17 -5.99 3.70 22.86 0.08 -5.91 16 7 C -0.03 -1.01 9.12 22.53 0.21 -0.80 16 8 C -0.17 -6.08 8.44 22.45 0.19 -5.89 16 9 C 0.46 22.14 7.16 85.01 0.61 22.74 16 10 O -0.61 -33.44 12.73 -4.78 -0.06 -33.50 16 11 N -0.42 -21.22 2.87 -623.35 -1.79 -23.01 16 12 C -0.34 -19.06 8.84 84.12 0.74 -18.32 16 13 H 0.06 3.67 7.60 -2.91 -0.02 3.65 16 14 C 0.02 0.98 5.04 84.96 0.43 1.41 16 15 N -0.87 -45.92 11.81 21.68 0.26 -45.67 16 16 Si 0.97 42.50 29.60 68.60 2.03 44.53 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.08 3.40 3.73 44.99 0.17 3.56 16 21 C -0.17 -5.02 7.94 30.62 0.24 -4.78 16 22 C -0.17 -6.28 10.12 30.62 0.31 -5.97 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.10 2.10 7.65 -2.39 -0.02 2.08 16 26 H 0.22 5.66 8.06 -2.91 -0.02 5.63 16 27 H 0.18 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.16 4.64 5.34 -2.91 -0.02 4.62 16 29 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.10 4.43 7.59 -2.39 -0.02 4.42 16 31 H 0.09 2.79 7.54 -2.39 -0.02 2.78 16 32 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -71.01 304.64 3.92 -67.09 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.11 Total: 19.18 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.58 Total: -12.15 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.52 Total: -89.21 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.06 Total: -33.50 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.23 Total: 4.05 kcal Total: -71.01 3.92 -67.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492663875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.001 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds