Wall clock time and date at job start Tue Mar 31 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99851 * 2 1 4 4 H 1.48499 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47003 * 300.00058 * 3 2 1 6 6 H 1.48498 * 109.47190 * 60.00112 * 3 2 1 7 7 C 1.37874 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00242 * 183.81651 * 7 2 1 9 9 C 1.50698 * 120.00072 * 3.80836 * 7 2 1 10 10 C 1.53000 * 115.55038 * 325.90944 * 9 7 2 11 11 N 1.46502 * 109.47214 * 306.63605 * 10 9 7 12 12 C 1.34775 * 120.00168 * 175.01134 * 11 10 9 13 13 O 1.21755 * 119.99718 * 5.05721 * 12 11 10 14 14 C 1.41712 * 120.00047 * 185.05517 * 12 11 10 15 15 C 1.35231 * 119.99940 * 195.99842 * 14 12 11 16 16 C 1.46716 * 119.99691 * 30.21895 * 15 14 12 17 17 C 1.36529 * 123.29531 * 186.92132 * 16 15 14 18 18 S 1.70938 * 108.70893 * 179.90058 * 17 16 15 19 19 C 1.70725 * 91.21546 * 0.30648 * 18 17 16 20 20 N 1.28605 * 110.81795 * 359.81674 * 19 18 17 21 21 C 1.52996 * 117.49675 * 111.57736 * 9 7 2 22 22 C 1.52997 * 117.50258 * 180.23684 * 9 7 2 23 23 H 0.96997 * 119.99957 * 5.00207 * 1 2 3 24 24 H 1.09007 * 109.47222 * 186.63346 * 10 9 7 25 25 H 1.09005 * 109.47271 * 66.63547 * 10 9 7 26 26 H 0.96999 * 119.99438 * 355.00774 * 11 10 9 27 27 H 1.07996 * 120.00111 * 15.99853 * 14 12 11 28 28 H 1.07992 * 119.99928 * 210.21301 * 15 14 12 29 29 H 1.07997 * 125.64138 * 0.02881 * 17 16 15 30 30 H 1.08000 * 124.59138 * 179.77943 * 19 18 17 31 31 H 1.09007 * 117.50125 * 215.00409 * 21 9 7 32 32 H 1.08997 * 117.49910 * 0.02562 * 21 9 7 33 33 H 1.09000 * 117.49690 * 359.97438 * 22 9 7 34 34 H 1.09000 * 117.50328 * 144.97774 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0828 -1.1951 0.0617 9 6 1.2536 -2.4976 -0.0878 10 6 -0.1086 -2.5223 0.6083 11 7 0.0456 -2.0881 1.9989 12 6 -1.0410 -1.9340 2.7812 13 8 -2.1416 -2.2433 2.3622 14 6 -0.9026 -1.4122 4.0915 15 6 -1.9078 -1.5528 4.9851 16 6 -2.7974 -2.7172 4.9111 17 6 -3.9117 -2.8595 5.6869 18 16 -4.6674 -4.3417 5.2946 19 6 -3.4631 -4.6908 4.1359 20 7 -2.5933 -3.7451 4.0817 21 6 1.4060 -3.3160 -1.3715 22 6 2.0752 -3.7883 -0.0784 23 1 -0.4850 0.8368 -0.0732 24 1 -0.5096 -3.5358 0.5863 25 1 -0.7931 -1.8496 0.0914 26 1 0.9297 -1.9116 2.3566 27 1 0.0057 -0.9021 4.3764 28 1 -2.0556 -0.8082 5.7531 29 1 -4.2594 -2.1517 6.4248 30 1 -3.4352 -5.5849 3.5309 31 1 0.5357 -3.8721 -1.7202 32 1 2.0497 -2.9118 -2.1526 33 1 3.1590 -3.6944 -0.0094 34 1 1.6455 -4.6549 0.4241 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493544691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:57 Heat of formation + Delta-G solvation = 76.465023 kcal Electronic energy + Delta-G solvation = -19136.078691 eV Core-core repulsion = 16163.269987 eV Total energy + Delta-G solvation = -2972.808704 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71699 -38.32255 -36.57061 -33.00268 -32.71377 -32.08588 -29.76573 -26.31843 -25.46356 -24.78063 -22.64299 -21.18630 -19.95254 -19.17165 -18.81826 -17.49911 -16.56836 -16.12761 -15.26513 -14.77123 -14.59493 -14.20824 -13.86975 -13.65853 -13.18668 -13.07561 -12.91484 -12.73920 -12.02841 -11.61670 -11.38747 -11.32393 -11.08327 -10.65051 -10.47520 -10.19819 -9.76280 -9.62671 -9.45257 -9.32771 -8.98149 -8.77626 -8.72078 -8.22713 -7.84431 -7.50149 -5.95072 -4.14972 0.61153 1.56579 1.61556 1.92418 3.22394 3.32554 3.35351 3.41021 4.32125 4.39183 4.44378 4.59643 5.04903 5.13882 5.31086 5.34765 5.52668 5.68422 5.88816 6.09688 6.27361 6.38418 6.51318 6.61466 6.62709 6.68268 6.83744 6.97358 7.22600 7.31462 7.65940 7.91448 7.97532 8.04345 8.37330 8.78622 8.95677 9.47765 9.53119 10.93604 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.004862 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.166030 B = 5757.934384 C = 6531.681017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.494 4.494 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.173 3.827 11 N -0.677 5.677 12 C 0.541 3.459 13 O -0.544 6.544 14 C -0.159 4.159 15 C -0.043 4.043 16 C 0.098 3.902 17 C -0.288 4.288 18 S 0.142 5.858 19 C 0.006 3.994 20 N -0.401 5.401 21 C -0.201 4.201 22 C -0.212 4.212 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.110 0.890 26 H 0.393 0.607 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.175 0.825 30 H 0.194 0.806 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 -5.576 11.870 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.050 3.950 11 N -0.323 5.323 12 C 0.329 3.671 13 O -0.425 6.425 14 C -0.182 4.182 15 C -0.065 4.065 16 C -0.034 4.034 17 C -0.428 4.428 18 S 0.397 5.603 19 C -0.295 4.295 20 N -0.112 5.112 21 C -0.240 4.240 22 C -0.250 4.250 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.128 0.872 26 H 0.226 0.774 27 H 0.149 0.851 28 H 0.157 0.843 29 H 0.192 0.808 30 H 0.210 0.790 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.577 -6.249 11.531 15.146 hybrid contribution 1.574 1.857 -0.068 2.435 sum -6.003 -4.391 11.463 13.664 Atomic orbital electron populations 1.69956 1.05610 1.26462 1.48043 1.25001 0.94820 0.98990 0.94185 0.86549 0.80089 0.83758 0.77701 1.19792 1.20948 1.21000 1.20540 0.92557 0.88682 1.51368 0.92176 1.19301 0.93110 0.89689 0.94436 1.20919 0.97317 0.95913 0.80885 1.45535 1.08055 1.65962 1.12773 1.16730 0.85186 0.79426 0.85755 1.90725 1.25917 1.50168 1.75662 1.22504 0.98395 1.02796 0.94544 1.21526 0.92614 0.93041 0.99333 1.19667 0.94995 0.95270 0.93465 1.26708 1.01619 1.04417 1.10018 1.82564 1.29956 1.13536 1.34250 1.28421 0.95078 1.02853 1.03160 1.67084 1.27198 0.99918 1.17031 1.22933 1.01780 1.06888 0.92377 1.22943 0.98406 1.00474 1.03145 0.92886 0.96693 0.87248 0.77359 0.85100 0.84331 0.80786 0.78961 0.91555 0.90346 0.90758 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.40 9.99 55.43 0.55 -22.84 16 2 C 0.07 1.92 5.27 -17.82 -0.09 1.83 16 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.49 -12.74 8.41 -34.44 -0.29 -13.03 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.04 0.86 2.06 -155.66 -0.32 0.53 16 10 C 0.17 4.27 4.59 -4.04 -0.02 4.25 16 11 N -0.68 -15.33 4.85 -63.19 -0.31 -15.63 16 12 C 0.54 11.99 6.69 -14.93 -0.10 11.89 16 13 O -0.54 -13.67 13.62 5.14 0.07 -13.60 16 14 C -0.16 -2.80 9.73 -39.33 -0.38 -3.18 16 15 C -0.04 -0.65 9.85 -37.23 -0.37 -1.02 16 16 C 0.10 1.60 5.94 -84.27 -0.50 1.10 16 17 C -0.29 -3.68 10.99 30.12 0.33 -3.35 16 18 S 0.14 1.59 22.96 -107.50 -2.47 -0.88 16 19 C 0.01 0.08 12.15 51.41 0.62 0.71 16 20 N -0.40 -7.28 7.30 -12.22 -0.09 -7.37 16 21 C -0.20 -4.52 9.96 -26.70 -0.27 -4.78 16 22 C -0.21 -4.57 9.92 -26.70 -0.26 -4.83 16 23 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 24 H 0.01 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.11 3.08 6.00 -51.93 -0.31 2.77 16 26 H 0.39 8.46 8.04 -40.82 -0.33 8.13 16 27 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 28 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 32 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -31.33 308.21 -8.25 -39.59 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -3.99 Total: 10.75 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.65 Total: -9.89 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.16 Total: -45.84 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.47 Total: -0.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.33 -8.25 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493544691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.050 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds