Wall clock time and date at job start Tue Mar 31 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99851 * 2 1 4 4 H 1.48499 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47003 * 300.00058 * 3 2 1 6 6 H 1.48498 * 109.47190 * 60.00112 * 3 2 1 7 7 C 1.37874 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00242 * 183.81651 * 7 2 1 9 9 C 1.50698 * 120.00072 * 3.80836 * 7 2 1 10 10 C 1.53000 * 115.55038 * 325.90944 * 9 7 2 11 11 N 1.46502 * 109.47214 * 306.63605 * 10 9 7 12 12 C 1.34775 * 120.00168 * 175.01134 * 11 10 9 13 13 O 1.21755 * 119.99718 * 5.05721 * 12 11 10 14 14 C 1.41712 * 120.00047 * 185.05517 * 12 11 10 15 15 C 1.35231 * 119.99940 * 195.99842 * 14 12 11 16 16 C 1.46716 * 119.99691 * 30.21895 * 15 14 12 17 17 C 1.36529 * 123.29531 * 186.92132 * 16 15 14 18 18 S 1.70938 * 108.70893 * 179.90058 * 17 16 15 19 19 C 1.70725 * 91.21546 * 0.30648 * 18 17 16 20 20 N 1.28605 * 110.81795 * 359.81674 * 19 18 17 21 21 C 1.52996 * 117.49675 * 111.57736 * 9 7 2 22 22 C 1.52997 * 117.50258 * 180.23684 * 9 7 2 23 23 H 0.96997 * 119.99957 * 5.00207 * 1 2 3 24 24 H 1.09007 * 109.47222 * 186.63346 * 10 9 7 25 25 H 1.09005 * 109.47271 * 66.63547 * 10 9 7 26 26 H 0.96999 * 119.99438 * 355.00774 * 11 10 9 27 27 H 1.07996 * 120.00111 * 15.99853 * 14 12 11 28 28 H 1.07992 * 119.99928 * 210.21301 * 15 14 12 29 29 H 1.07997 * 125.64138 * 0.02881 * 17 16 15 30 30 H 1.08000 * 124.59138 * 179.77943 * 19 18 17 31 31 H 1.09007 * 117.50125 * 215.00409 * 21 9 7 32 32 H 1.08997 * 117.49910 * 0.02562 * 21 9 7 33 33 H 1.09000 * 117.49690 * 359.97438 * 22 9 7 34 34 H 1.09000 * 117.50328 * 144.97774 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0828 -1.1951 0.0617 9 6 1.2536 -2.4976 -0.0878 10 6 -0.1086 -2.5223 0.6083 11 7 0.0456 -2.0881 1.9989 12 6 -1.0410 -1.9340 2.7812 13 8 -2.1416 -2.2433 2.3622 14 6 -0.9026 -1.4122 4.0915 15 6 -1.9078 -1.5528 4.9851 16 6 -2.7974 -2.7172 4.9111 17 6 -3.9117 -2.8595 5.6869 18 16 -4.6674 -4.3417 5.2946 19 6 -3.4631 -4.6908 4.1359 20 7 -2.5933 -3.7451 4.0817 21 6 1.4060 -3.3160 -1.3715 22 6 2.0752 -3.7883 -0.0784 23 1 -0.4850 0.8368 -0.0732 24 1 -0.5096 -3.5358 0.5863 25 1 -0.7931 -1.8496 0.0914 26 1 0.9297 -1.9116 2.3566 27 1 0.0057 -0.9021 4.3764 28 1 -2.0556 -0.8082 5.7531 29 1 -4.2594 -2.1517 6.4248 30 1 -3.4352 -5.5849 3.5309 31 1 0.5357 -3.8721 -1.7202 32 1 2.0497 -2.9118 -2.1526 33 1 3.1590 -3.6944 -0.0094 34 1 1.6455 -4.6549 0.4241 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493544691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:57 Heat of formation + Delta-G solvation = 56.465717 kcal Electronic energy + Delta-G solvation = -19136.945926 eV Core-core repulsion = 16163.269987 eV Total energy + Delta-G solvation = -2973.675939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97393 -39.85413 -38.37023 -34.56148 -34.21670 -34.03365 -30.91126 -28.04637 -27.35369 -25.96182 -24.03938 -22.96144 -21.29398 -21.06570 -20.09528 -18.91549 -17.97471 -17.76923 -16.75857 -16.51169 -16.22739 -15.59732 -15.42960 -15.12592 -14.71201 -14.45565 -14.19581 -14.09392 -13.59049 -13.44169 -13.24938 -12.92739 -12.51433 -12.40872 -12.26385 -12.03527 -11.51116 -10.91382 -10.86727 -10.69476 -10.51685 -10.46560 -10.34253 -10.10441 -9.38293 -8.93357 -7.91570 -6.17696 -0.49401 0.43789 0.60890 0.89838 1.42039 1.46895 1.56507 2.23829 2.43297 2.81092 2.92087 3.19611 3.44902 3.66552 4.08062 4.25653 4.29540 4.42652 4.47267 4.55977 4.64901 4.78083 4.85554 4.94995 5.08583 5.14081 5.29396 5.32314 5.50922 5.52673 5.62945 6.00524 6.12204 6.40583 6.83046 6.95060 7.22302 7.47092 7.86777 8.94748 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.004862 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.166030 B = 5757.934384 C = 6531.681017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.006 3.994 10 C 0.190 3.810 11 N -0.682 5.682 12 C 0.541 3.459 13 O -0.585 6.585 14 C -0.213 4.213 15 C -0.002 4.002 16 C 0.041 3.959 17 C -0.272 4.272 18 S 0.236 5.764 19 C -0.029 4.029 20 N -0.454 5.454 21 C -0.201 4.201 22 C -0.188 4.188 23 H 0.255 0.745 24 H 0.002 0.998 25 H 0.072 0.928 26 H 0.396 0.604 27 H 0.153 0.847 28 H 0.185 0.815 29 H 0.211 0.789 30 H 0.205 0.795 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -5.494 14.071 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.066 3.934 11 N -0.328 5.328 12 C 0.331 3.669 13 O -0.468 6.468 14 C -0.236 4.236 15 C -0.024 4.024 16 C -0.091 4.091 17 C -0.412 4.412 18 S 0.492 5.508 19 C -0.329 4.329 20 N -0.167 5.167 21 C -0.239 4.239 22 C -0.225 4.225 23 H 0.064 0.936 24 H 0.020 0.980 25 H 0.089 0.911 26 H 0.230 0.770 27 H 0.170 0.830 28 H 0.202 0.798 29 H 0.228 0.772 30 H 0.221 0.779 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.118 -6.188 13.743 17.119 hybrid contribution 1.517 1.686 -0.630 2.354 sum -6.601 -4.502 13.114 15.356 Atomic orbital electron populations 1.70156 1.06830 1.26527 1.49059 1.25613 0.95343 1.01698 0.93954 0.85610 0.79120 0.80156 0.77312 1.19154 1.21417 1.20712 1.20700 0.92426 0.89559 1.51273 0.92452 1.19362 0.93409 0.90574 0.96074 1.20497 0.96838 0.94063 0.82039 1.45492 1.08595 1.66644 1.12029 1.17375 0.84223 0.78072 0.87195 1.90677 1.27144 1.52161 1.76831 1.22362 1.01179 1.06511 0.93554 1.22205 0.89839 0.92086 0.98298 1.20004 0.97511 0.96009 0.95549 1.27311 0.99905 1.05519 1.08485 1.82225 1.26619 1.11155 1.30847 1.28738 0.96265 1.03087 1.04782 1.67055 1.29544 1.01368 1.18695 1.22956 1.02211 1.06453 0.92327 1.22917 0.98649 0.99125 1.01791 0.93558 0.97977 0.91050 0.77009 0.82962 0.79772 0.77220 0.77865 0.90898 0.90264 0.89706 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.55 9.99 21.45 0.21 -49.34 16 2 C 0.04 1.85 5.27 84.65 0.45 2.30 16 3 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.50 -26.11 8.41 25.60 0.22 -25.90 16 8 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 9 C 0.01 0.32 2.06 -52.93 -0.11 0.21 16 10 C 0.19 9.81 4.59 86.38 0.40 10.20 16 11 N -0.68 -32.10 4.85 -472.03 -2.29 -34.39 16 12 C 0.54 24.84 6.69 85.10 0.57 25.41 16 13 O -0.58 -30.69 13.62 -4.52 -0.06 -30.75 16 14 C -0.21 -7.53 9.73 22.43 0.22 -7.31 16 15 C 0.00 -0.07 9.85 23.79 0.23 0.17 16 16 C 0.04 1.29 5.94 40.68 0.24 1.53 16 17 C -0.27 -6.02 10.99 67.42 0.74 -5.27 16 18 S 0.24 4.53 22.96 -56.49 -1.30 3.24 16 19 C -0.03 -0.83 12.15 130.72 1.59 0.76 16 20 N -0.45 -16.59 7.30 -192.58 -1.41 -18.00 16 21 C -0.20 -9.03 9.96 30.62 0.30 -8.73 16 22 C -0.19 -7.95 9.92 30.62 0.30 -7.65 16 23 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 24 H 0.00 0.11 8.08 -2.38 -0.02 0.09 16 25 H 0.07 4.25 6.00 -2.38 -0.01 4.24 16 26 H 0.40 17.66 8.04 -92.71 -0.75 16.92 16 27 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.21 2.95 8.06 -2.91 -0.02 2.92 16 30 H 0.20 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.07 3.13 8.14 -2.38 -0.02 3.12 16 32 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -70.59 308.21 2.72 -67.87 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.38 Total: 31.73 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 5.15 Total: -14.27 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -3.48 Total: -101.73 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.75 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.30 Total: 3.24 kcal Total: -70.59 2.72 -67.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493544691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.336 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds