Wall clock time and date at job start Tue Mar 31 2020 00:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86802 * 120.00106 * 2 1 4 4 H 1.48499 * 109.46986 * 240.00148 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46809 * 119.99841 * 3 2 1 7 7 C 1.39003 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99653 * 182.14390 * 7 2 1 9 9 N 1.36890 * 120.00051 * 2.14905 * 7 2 1 10 10 C 1.34778 * 119.99995 * 119.60929 * 9 7 2 11 11 O 1.21729 * 119.99720 * 183.98237 * 10 9 7 12 12 C 1.46559 * 120.00038 * 3.97127 * 10 9 7 13 13 C 1.36786 * 126.17958 * 352.65636 * 12 10 9 14 14 N 1.30944 * 113.92037 * 179.97438 * 13 12 10 15 15 C 1.29383 * 117.46714 * 0.02562 * 14 13 12 16 16 C 1.50701 * 124.70099 * 180.02562 * 15 14 13 17 17 C 1.53001 * 117.49589 * 8.72291 * 16 15 14 18 18 C 1.52992 * 117.49842 * 300.06287 * 16 15 14 19 19 S 1.70918 * 110.59329 * 359.74555 * 15 14 13 20 20 C 1.46495 * 120.00195 * 299.60291 * 9 7 2 21 21 C 1.53007 * 117.49568 * 2.59196 * 20 9 7 22 22 C 1.52997 * 59.99955 * 252.51343 * 21 20 9 23 23 H 0.97006 * 119.99691 * 5.00785 * 1 2 3 24 24 H 1.07993 * 123.04081 * 359.97438 * 13 12 10 25 25 H 1.08993 * 115.55000 * 154.38816 * 16 15 14 26 26 H 1.08997 * 117.50115 * 359.97438 * 17 16 15 27 27 H 1.09002 * 117.49906 * 145.02251 * 17 16 15 28 28 H 1.09004 * 117.50089 * 214.98073 * 18 16 15 29 29 H 1.09003 * 117.50561 * 359.97438 * 18 16 15 30 30 H 1.08992 * 115.55350 * 148.30068 * 20 9 7 31 31 H 1.08994 * 117.49884 * 359.97438 * 21 20 9 32 32 H 1.08997 * 117.49671 * 145.02102 * 21 20 9 33 33 H 1.09009 * 117.49867 * 252.50880 * 22 21 20 34 34 H 1.09001 * 117.52107 * 107.49118 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0090 -1.2038 0.0005 8 1 3.0885 -1.2041 0.0355 9 7 1.3252 -2.3889 -0.0434 10 6 1.5208 -3.2422 -1.0682 11 8 0.8605 -4.2619 -1.1455 12 6 2.5283 -2.9423 -2.0894 13 6 3.2373 -1.7784 -2.2070 14 7 4.0785 -1.7682 -3.2104 15 6 4.1378 -2.8279 -3.9502 16 6 5.0451 -2.9924 -5.1422 17 6 6.1015 -1.9115 -5.3804 18 6 4.8796 -2.0036 -6.2978 19 16 3.0500 -4.0183 -3.3836 20 6 0.3810 -2.7298 1.0235 21 6 0.1579 -1.6937 2.1270 22 6 0.9520 -2.9675 2.4229 23 1 -0.4850 0.8369 -0.0733 24 1 3.1143 -0.9434 -1.5332 25 1 5.3106 -4.0194 -5.3927 26 1 6.1399 -1.0813 -4.6752 27 1 7.0617 -2.2274 -5.7881 28 1 5.0364 -2.3799 -7.3087 29 1 4.1141 -1.2342 -6.1962 30 1 -0.4739 -3.3337 0.7195 31 1 0.7139 -0.7587 2.0594 32 1 -0.8441 -1.6158 2.5491 33 1 0.4726 -3.7277 3.0398 34 1 2.0303 -2.8707 2.5498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517081428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:22 Heat of formation + Delta-G solvation = 80.870604 kcal Electronic energy + Delta-G solvation = -19286.603606 eV Core-core repulsion = 16313.985943 eV Total energy + Delta-G solvation = -2972.617664 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51340 -38.50992 -36.60559 -36.01868 -33.39610 -31.57668 -29.31641 -26.07976 -25.35016 -22.44989 -22.20947 -21.69926 -21.20555 -19.87817 -18.74737 -17.86968 -16.68641 -15.98690 -15.31916 -15.21565 -14.64394 -14.23633 -14.03959 -13.60538 -13.46122 -13.04111 -12.84198 -12.19921 -12.00978 -11.58569 -11.47915 -11.25083 -11.09436 -10.65607 -10.62752 -10.57064 -10.49931 -10.41859 -9.68025 -9.43158 -9.29492 -8.82582 -8.77420 -8.66273 -8.06857 -7.25884 -6.52931 -4.49493 0.97616 1.80519 2.36530 3.04719 3.10855 3.11486 3.22542 3.90378 3.96151 4.25339 4.42584 4.65698 4.73455 4.90428 4.94028 5.06335 5.13573 5.64133 5.74824 5.87606 5.96347 5.99751 6.09619 6.14359 6.15817 6.24186 6.30192 6.48071 6.82907 7.01834 7.07392 7.18825 7.35409 7.97635 8.12622 8.34232 8.81306 9.25464 9.74063 10.46913 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.006729 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.263962 B = 4159.879710 C = 5280.117954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.399 5.399 10 C 0.561 3.439 11 O -0.597 6.597 12 C -0.242 4.242 13 C 0.071 3.929 14 N -0.481 5.481 15 C 0.043 3.957 16 C -0.089 4.089 17 C -0.152 4.152 18 C -0.159 4.159 19 S 0.164 5.836 20 C 0.107 3.893 21 C -0.134 4.134 22 C -0.218 4.218 23 H 0.274 0.726 24 H 0.224 0.776 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -1.403 -5.777 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.150 4.150 3 Si 0.724 3.276 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.109 0.891 9 N -0.116 5.116 10 C 0.350 3.650 11 O -0.484 6.484 12 C -0.365 4.365 13 C -0.083 4.083 14 N -0.196 5.196 15 C -0.231 4.231 16 C -0.111 4.111 17 C -0.191 4.191 18 C -0.198 4.198 19 S 0.421 5.579 20 C 0.002 3.998 21 C -0.172 4.172 22 C -0.257 4.257 23 H 0.085 0.915 24 H 0.240 0.760 25 H 0.140 0.860 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.969 -2.378 -6.172 9.608 hybrid contribution 0.115 1.649 0.638 1.771 sum 7.084 -0.729 -5.535 9.019 Atomic orbital electron populations 1.69958 1.06092 1.28543 1.42034 1.25696 0.95479 0.99684 0.94104 0.86421 0.79838 0.81304 0.80040 1.18586 1.20342 1.19103 1.19242 0.91378 0.82394 1.56120 0.89113 1.42392 1.36631 1.16229 1.16342 1.17021 0.82677 0.84661 0.80683 1.90680 1.50972 1.29049 1.77662 1.26000 1.07838 0.98878 1.03803 1.24502 0.89819 0.99319 0.94649 1.66198 1.21914 1.25484 1.06019 1.26235 1.01691 0.94455 1.00763 1.20417 1.00495 0.97020 0.93144 1.22987 0.92908 1.00645 1.02578 1.23028 1.01276 1.01351 0.94183 1.83593 1.33019 1.18527 1.22727 1.21227 0.94416 1.01553 0.82608 1.22910 0.99379 0.94395 1.00472 1.23379 1.00028 1.01288 1.01022 0.91505 0.76041 0.86012 0.87348 0.88479 0.88251 0.88335 0.87777 0.87112 0.90636 0.90303 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.84 11.15 55.50 0.62 -20.22 16 2 C 0.06 1.45 3.83 -17.45 -0.07 1.38 16 3 Si 0.90 18.21 29.07 -169.99 -4.94 13.27 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.36 -8.74 5.29 -15.01 -0.08 -8.82 16 8 H 0.09 2.12 6.27 -52.48 -0.33 1.80 16 9 N -0.40 -10.02 2.70 -109.24 -0.29 -10.31 16 10 C 0.56 14.41 7.60 -12.90 -0.10 14.31 16 11 O -0.60 -16.44 16.75 5.16 0.09 -16.36 16 12 C -0.24 -5.51 6.44 -36.75 -0.24 -5.75 16 13 C 0.07 1.55 9.94 -18.46 -0.18 1.37 16 14 N -0.48 -9.55 9.96 -11.25 -0.11 -9.66 16 15 C 0.04 0.75 6.95 -13.31 -0.09 0.65 16 16 C -0.09 -1.16 6.28 -91.77 -0.58 -1.74 16 17 C -0.15 -1.76 10.12 -26.69 -0.27 -2.03 16 18 C -0.16 -1.81 10.24 -26.70 -0.27 -2.08 16 19 S 0.16 3.05 23.01 -107.50 -2.47 0.58 16 20 C 0.11 2.53 5.61 -67.93 -0.38 2.15 16 21 C -0.13 -2.87 8.32 -26.73 -0.22 -3.09 16 22 C -0.22 -4.42 10.36 -26.73 -0.28 -4.69 16 23 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 24 H 0.22 5.00 3.78 -52.49 -0.20 4.81 16 25 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.11 1.45 7.83 -51.93 -0.41 1.04 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 2.55 7.76 -51.93 -0.40 2.15 16 31 H 0.11 2.55 5.51 -51.93 -0.29 2.26 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 34 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -28.24 301.40 -9.05 -37.29 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.72 Total: 9.19 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.76 Total: -8.32 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.21 Total: -40.18 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.94 Total: 13.27 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.47 Total: 0.58 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.24 -9.05 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517081428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.160 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds