Wall clock time and date at job start Tue Mar 31 2020 00:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86802 * 120.00106 * 2 1 4 4 H 1.48499 * 109.46986 * 240.00148 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46809 * 119.99841 * 3 2 1 7 7 C 1.39003 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99653 * 182.14390 * 7 2 1 9 9 N 1.36890 * 120.00051 * 2.14905 * 7 2 1 10 10 C 1.34778 * 119.99995 * 119.60929 * 9 7 2 11 11 O 1.21729 * 119.99720 * 183.98237 * 10 9 7 12 12 C 1.46559 * 120.00038 * 3.97127 * 10 9 7 13 13 C 1.36786 * 126.17958 * 352.65636 * 12 10 9 14 14 N 1.30944 * 113.92037 * 179.97438 * 13 12 10 15 15 C 1.29383 * 117.46714 * 0.02562 * 14 13 12 16 16 C 1.50701 * 124.70099 * 180.02562 * 15 14 13 17 17 C 1.53001 * 117.49589 * 8.72291 * 16 15 14 18 18 C 1.52992 * 117.49842 * 300.06287 * 16 15 14 19 19 S 1.70918 * 110.59329 * 359.74555 * 15 14 13 20 20 C 1.46495 * 120.00195 * 299.60291 * 9 7 2 21 21 C 1.53007 * 117.49568 * 2.59196 * 20 9 7 22 22 C 1.52997 * 59.99955 * 252.51343 * 21 20 9 23 23 H 0.97006 * 119.99691 * 5.00785 * 1 2 3 24 24 H 1.07993 * 123.04081 * 359.97438 * 13 12 10 25 25 H 1.08993 * 115.55000 * 154.38816 * 16 15 14 26 26 H 1.08997 * 117.50115 * 359.97438 * 17 16 15 27 27 H 1.09002 * 117.49906 * 145.02251 * 17 16 15 28 28 H 1.09004 * 117.50089 * 214.98073 * 18 16 15 29 29 H 1.09003 * 117.50561 * 359.97438 * 18 16 15 30 30 H 1.08992 * 115.55350 * 148.30068 * 20 9 7 31 31 H 1.08994 * 117.49884 * 359.97438 * 21 20 9 32 32 H 1.08997 * 117.49671 * 145.02102 * 21 20 9 33 33 H 1.09009 * 117.49867 * 252.50880 * 22 21 20 34 34 H 1.09001 * 117.52107 * 107.49118 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0090 -1.2038 0.0005 8 1 3.0885 -1.2041 0.0355 9 7 1.3252 -2.3889 -0.0434 10 6 1.5208 -3.2422 -1.0682 11 8 0.8605 -4.2619 -1.1455 12 6 2.5283 -2.9423 -2.0894 13 6 3.2373 -1.7784 -2.2070 14 7 4.0785 -1.7682 -3.2104 15 6 4.1378 -2.8279 -3.9502 16 6 5.0451 -2.9924 -5.1422 17 6 6.1015 -1.9115 -5.3804 18 6 4.8796 -2.0036 -6.2978 19 16 3.0500 -4.0183 -3.3836 20 6 0.3810 -2.7298 1.0235 21 6 0.1579 -1.6937 2.1270 22 6 0.9520 -2.9675 2.4229 23 1 -0.4850 0.8369 -0.0733 24 1 3.1143 -0.9434 -1.5332 25 1 5.3106 -4.0194 -5.3927 26 1 6.1399 -1.0813 -4.6752 27 1 7.0617 -2.2274 -5.7881 28 1 5.0364 -2.3799 -7.3087 29 1 4.1141 -1.2342 -6.1962 30 1 -0.4739 -3.3337 0.7195 31 1 0.7139 -0.7587 2.0594 32 1 -0.8441 -1.6158 2.5491 33 1 0.4726 -3.7277 3.0398 34 1 2.0303 -2.8707 2.5498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517081428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:21 Heat of formation + Delta-G solvation = 64.923783 kcal Electronic energy + Delta-G solvation = -19287.295112 eV Core-core repulsion = 16313.985943 eV Total energy + Delta-G solvation = -2973.309170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17445 -40.17116 -37.97317 -37.64300 -35.19819 -33.44864 -30.91720 -27.69981 -27.05581 -23.90697 -23.28005 -23.20292 -22.87352 -21.66461 -20.37943 -19.43989 -18.34617 -17.54581 -17.11161 -16.48268 -16.36560 -15.91367 -15.49031 -15.25068 -14.98037 -14.76796 -14.51567 -13.95393 -13.43791 -13.13041 -12.90455 -12.84446 -12.35590 -12.28112 -12.18513 -12.09210 -11.75333 -11.54992 -11.43654 -11.16796 -10.98944 -10.58460 -10.43577 -10.32795 -9.61730 -9.12069 -8.35788 -6.38125 -0.58767 0.28732 0.81463 1.42866 1.43850 1.51331 1.61897 2.20489 2.39555 2.83954 2.86473 2.96921 3.23761 3.36699 3.89879 3.94428 4.11780 4.17204 4.26110 4.35954 4.45105 4.49070 4.60210 4.82520 4.85389 4.98331 5.05356 5.14163 5.28918 5.30500 5.34137 5.43164 5.59031 6.11060 6.26363 6.76984 6.95417 7.35365 7.86453 8.65136 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.006729 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.263962 B = 4159.879710 C = 5280.117954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.031 3.969 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.406 5.406 10 C 0.545 3.455 11 O -0.633 6.633 12 C -0.293 4.293 13 C 0.081 3.919 14 N -0.502 5.502 15 C 0.068 3.932 16 C -0.112 4.112 17 C -0.142 4.142 18 C -0.146 4.146 19 S 0.193 5.807 20 C 0.068 3.932 21 C -0.122 4.122 22 C -0.189 4.189 23 H 0.275 0.725 24 H 0.213 0.787 25 H 0.154 0.846 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -1.112 -7.028 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.497 4.497 8 H 0.111 0.889 9 N -0.121 5.121 10 C 0.335 3.665 11 O -0.522 6.522 12 C -0.416 4.416 13 C -0.075 4.075 14 N -0.217 5.217 15 C -0.206 4.206 16 C -0.134 4.134 17 C -0.181 4.181 18 C -0.185 4.185 19 S 0.451 5.549 20 C -0.036 4.036 21 C -0.160 4.160 22 C -0.228 4.228 23 H 0.085 0.915 24 H 0.228 0.772 25 H 0.171 0.829 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.067 -2.087 -7.398 11.886 hybrid contribution -0.474 1.524 0.915 1.840 sum 8.593 -0.563 -6.483 10.779 Atomic orbital electron populations 1.70062 1.07433 1.29261 1.43060 1.26315 0.95962 1.02134 0.93260 0.85504 0.78651 0.77459 0.80213 1.18515 1.20322 1.18089 1.19410 0.91522 0.82442 1.56373 0.88904 1.42610 1.36475 1.16476 1.16580 1.17492 0.83207 0.84459 0.81373 1.90618 1.52558 1.30358 1.78714 1.25841 1.09141 1.00980 1.05658 1.24309 0.89671 0.98651 0.94862 1.66268 1.22333 1.26637 1.06451 1.27141 1.00159 0.92854 1.00428 1.20836 1.00926 0.99461 0.92144 1.23088 0.94299 0.98858 1.01879 1.23143 1.00444 0.99640 0.95262 1.83367 1.32762 1.17852 1.20883 1.21350 0.94906 1.03567 0.83821 1.22819 1.00183 0.93852 0.99154 1.23394 1.00006 1.01075 0.98292 0.91469 0.77185 0.82884 0.89493 0.85017 0.84664 0.90258 0.89709 0.88615 0.89147 0.87383 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.06 11.15 21.67 0.24 -43.82 16 2 C 0.03 1.50 3.83 84.94 0.33 1.82 16 3 Si 0.96 37.44 29.07 68.60 1.99 39.44 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.37 -18.19 5.29 84.09 0.44 -17.75 16 8 H 0.09 4.45 6.27 -2.91 -0.02 4.43 16 9 N -0.41 -21.07 2.70 -617.73 -1.66 -22.74 16 10 C 0.54 29.15 7.60 86.41 0.66 29.81 16 11 O -0.63 -36.45 16.75 -4.44 -0.07 -36.53 16 12 C -0.29 -13.71 6.44 24.10 0.16 -13.55 16 13 C 0.08 3.57 9.94 84.48 0.84 4.40 16 14 N -0.50 -19.62 9.96 -189.50 -1.89 -21.51 16 15 C 0.07 2.27 6.95 88.47 0.62 2.89 16 16 C -0.11 -2.53 6.28 -11.54 -0.07 -2.60 16 17 C -0.14 -2.75 10.12 30.62 0.31 -2.44 16 18 C -0.15 -2.76 10.24 30.62 0.31 -2.45 16 19 S 0.19 7.08 23.01 -56.49 -1.30 5.78 16 20 C 0.07 3.33 5.61 44.99 0.25 3.58 16 21 C -0.12 -5.26 8.32 30.60 0.25 -5.00 16 22 C -0.19 -7.56 10.36 30.59 0.32 -7.24 16 23 H 0.28 13.30 8.32 -92.70 -0.77 12.53 16 24 H 0.21 9.70 3.78 -2.91 -0.01 9.69 16 25 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.09 2.12 7.83 -2.39 -0.02 2.10 16 27 H 0.13 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 4.37 7.76 -2.39 -0.02 4.35 16 31 H 0.10 4.43 5.51 -2.39 -0.01 4.42 16 32 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.11 3.66 8.14 -2.38 -0.02 3.65 16 34 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -63.35 301.40 2.86 -60.49 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 1.13 Total: 27.42 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 4.41 Total: -8.54 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -3.31 Total: -88.06 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.07 Total: -36.53 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 1.99 Total: 39.44 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.30 Total: 5.78 kcal Total: -63.35 2.86 -60.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517081428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.413 kcal (2) G-P(sol) polarization free energy of solvation -63.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds