Wall clock time and date at job start Mon Mar 30 2020 23:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47894 * 2 1 4 4 C 1.50705 * 109.47250 * 239.99463 * 2 1 3 5 5 H 1.07997 * 120.00145 * 240.00611 * 4 2 1 6 6 C 1.37879 * 119.99854 * 60.00243 * 4 2 1 7 7 N 1.31521 * 119.99530 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46852 * 60.00182 * 8 6 4 10 10 H 1.48499 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46909 * 300.00228 * 8 6 4 12 12 N 1.46505 * 109.47033 * 120.00169 * 2 1 3 13 13 C 1.34784 * 119.99668 * 274.99683 * 12 2 1 14 14 O 1.21611 * 119.99999 * 359.97438 * 13 12 2 15 15 C 1.47413 * 119.99721 * 180.02562 * 13 12 2 16 16 N 1.36066 * 126.45500 * 0.11904 * 15 13 12 17 17 C 1.29937 * 108.48029 * 180.29119 * 16 15 13 18 18 O 1.34055 * 109.24039 * 359.75537 * 17 16 15 19 19 C 1.34251 * 108.22709 * 0.02562 * 18 17 16 20 20 C 1.50706 * 126.52330 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.46715 * 270.02174 * 20 19 18 22 22 F 1.39897 * 109.47068 * 30.02085 * 20 19 18 23 23 F 1.39895 * 109.47042 * 150.02394 * 20 19 18 24 24 H 1.08998 * 109.46982 * 300.00536 * 1 2 3 25 25 H 1.09004 * 109.46669 * 60.00278 * 1 2 3 26 26 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99378 * 180.02562 * 7 6 4 28 28 H 0.96991 * 120.00258 * 95.00052 * 12 2 1 29 29 H 1.07995 * 125.37533 * 179.73769 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1198 -4.0079 9 1 1.8280 -2.5200 -4.0081 10 1 1.8280 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8583 1.1618 2.4116 15 6 2.6389 -0.7130 3.5607 16 7 3.0010 -2.0218 3.6475 17 6 3.3737 -2.2660 4.8680 18 8 3.2718 -1.1436 5.5940 19 6 2.8181 -0.1657 4.7938 20 6 2.5523 1.2645 5.1875 21 9 1.2295 1.3894 5.6254 22 9 3.4219 1.6334 6.2194 23 9 2.7587 2.0982 4.0832 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.7090 1.1612 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 3.7119 -3.2221 5.2391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590434290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:38 Heat of formation + Delta-G solvation = -154.282928 kcal Electronic energy + Delta-G solvation = -21972.163810 eV Core-core repulsion = 17868.906418 eV Total energy + Delta-G solvation = -4103.257392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.16095 -47.75500 -47.53695 -43.79805 -38.91502 -35.19315 -34.94612 -32.40422 -31.65365 -29.11723 -26.44861 -25.28501 -24.14918 -22.61705 -21.17896 -19.79075 -19.10436 -18.65591 -18.29380 -17.85008 -16.96381 -16.37989 -15.77300 -15.29580 -14.69249 -14.53162 -14.42253 -14.15544 -14.13971 -14.04147 -13.69982 -13.68322 -13.14704 -12.68202 -12.44802 -11.85803 -11.59708 -11.17444 -11.09921 -10.97559 -10.79801 -10.36738 -10.25416 -9.64807 -9.48579 -9.09902 -8.58672 -8.03394 -6.14425 -4.23907 0.53094 1.57614 1.87338 2.83609 3.25836 3.30692 3.31736 3.47042 3.58959 3.62522 3.86574 4.20903 4.26975 4.34495 4.78285 5.14154 5.16167 5.18723 5.77576 6.77631 6.90641 7.00006 7.08369 7.30883 7.48885 7.65588 7.85449 8.09493 8.50815 8.67925 8.92620 9.42878 10.91636 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.004882 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.288150 B = 5734.070284 C = 6270.837997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.677 5.677 13 C 0.566 3.434 14 O -0.525 6.525 15 C 0.035 3.965 16 N -0.462 5.462 17 C 0.212 3.788 18 O -0.177 6.177 19 C -0.101 4.101 20 C 0.566 3.434 21 F -0.162 7.162 22 F -0.173 7.173 23 F -0.120 7.120 24 H 0.016 0.984 25 H 0.093 0.907 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.399 0.601 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -4.976 16.015 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.324 5.324 13 C 0.348 3.652 14 O -0.402 6.402 15 C -0.087 4.087 16 N -0.191 5.191 17 C -0.015 4.015 18 O -0.063 6.063 19 C -0.159 4.159 20 C 0.510 3.490 21 F -0.143 7.143 22 F -0.154 7.154 23 F -0.100 7.100 24 H 0.035 0.965 25 H 0.112 0.888 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.901 -4.391 15.382 16.465 hybrid contribution 0.484 -0.603 -0.146 0.787 sum 4.385 -4.995 15.235 16.622 Atomic orbital electron populations 1.22090 0.97989 0.99380 1.01168 1.18920 0.91338 0.94153 0.79430 0.92818 1.21152 1.32743 1.13398 0.90118 0.91929 1.24877 0.94742 0.94939 0.99042 1.69892 1.35688 1.22325 1.24103 0.86468 0.79188 0.79580 0.81639 1.20108 1.21105 1.20142 1.46457 1.62316 1.14141 1.09471 1.16856 0.80125 0.86263 0.81995 1.90902 1.51232 1.14055 1.84026 1.22418 1.01052 0.90108 0.95161 1.71003 1.14946 1.13586 1.19558 1.28481 0.97197 0.90762 0.85070 1.84337 1.63640 1.18053 1.40255 1.23151 1.10104 0.91233 0.91367 1.16460 0.74839 0.82193 0.75490 1.93268 1.35384 1.96122 1.89528 1.93233 1.69722 1.92581 1.59899 1.93487 1.94351 1.71146 1.51048 0.96469 0.88828 0.95273 0.92433 0.76715 0.71747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 15 2 C 0.26 6.68 2.56 -69.08 -0.18 6.51 15 3 H 0.05 1.55 7.58 -51.93 -0.39 1.16 15 4 C -0.54 -14.19 8.73 -34.44 -0.30 -14.49 15 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -24.64 11.32 55.43 0.63 -24.01 15 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 12 N -0.68 -14.65 5.07 -56.01 -0.28 -14.94 15 13 C 0.57 11.81 7.73 -12.52 -0.10 11.71 15 14 O -0.52 -12.26 12.82 5.27 0.07 -12.19 15 15 C 0.04 0.60 6.96 -83.02 -0.58 0.02 15 16 N -0.46 -6.43 11.06 -11.48 -0.13 -6.56 15 17 C 0.21 1.98 13.19 51.96 0.69 2.66 15 18 O -0.18 -2.05 10.72 6.51 0.07 -1.98 15 19 C -0.10 -1.52 6.75 -35.07 -0.24 -1.75 15 20 C 0.57 8.61 3.34 36.01 0.12 8.73 15 21 F -0.16 -2.47 17.30 2.25 0.04 -2.43 15 22 F -0.17 -2.33 17.30 2.25 0.04 -2.29 15 23 F -0.12 -2.15 13.50 2.25 0.03 -2.12 15 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 15 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.40 7.87 8.27 -40.82 -0.34 7.54 15 29 H 0.27 0.73 8.06 -52.49 -0.42 0.30 15 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -30.81 276.06 -2.59 -33.40 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -1.86 Total: 1.64 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.33 Total: 11.78 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.22 Total: -45.51 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.14 Total: -14.17 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.81 -2.59 -33.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.887 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds