Wall clock time and date at job start Mon Mar 30 2020 23:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47434 * 2 1 4 4 C 1.50710 * 109.47048 * 119.99992 * 2 1 3 5 5 H 1.08000 * 120.00037 * 119.99698 * 4 2 1 6 6 C 1.37877 * 119.99770 * 300.00357 * 4 2 1 7 7 N 1.31518 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99762 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47367 * 59.99757 * 8 6 4 10 10 H 1.48502 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46679 * 299.99315 * 8 6 4 12 12 N 1.46502 * 109.47399 * 239.99722 * 2 1 3 13 13 C 1.34772 * 119.99562 * 84.99938 * 12 2 1 14 14 O 1.21607 * 120.00378 * 0.02562 * 13 12 2 15 15 C 1.47420 * 119.99827 * 180.02562 * 13 12 2 16 16 N 1.36075 * 126.44969 * 0.02719 * 15 13 12 17 17 C 1.29937 * 108.47981 * 179.73820 * 16 15 13 18 18 O 1.34048 * 109.24116 * 359.97438 * 17 16 15 19 19 C 1.34254 * 108.23048 * 0.02562 * 18 17 16 20 20 C 1.50696 * 126.52951 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47354 * 269.95733 * 20 19 18 22 22 F 1.39900 * 109.47059 * 29.95279 * 20 19 18 23 23 F 1.39899 * 109.47672 * 149.95142 * 20 19 18 24 24 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47447 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47052 * 59.99964 * 1 2 3 27 27 H 0.96999 * 120.00074 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99906 * 265.00208 * 12 2 1 29 29 H 1.07992 * 125.37760 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0079 10 1 1.8277 -0.4193 5.2205 11 1 1.8278 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3570 14 8 1.8582 1.1617 -2.4116 15 6 2.6380 -0.7134 -3.5608 16 7 2.9964 -2.0231 -3.6484 17 6 3.3701 -2.2672 -4.8688 18 8 3.2666 -1.1453 -5.5951 19 6 2.8121 -0.1675 -4.7953 20 6 2.5445 1.2622 -5.1895 21 9 3.7019 2.0238 -4.9955 22 9 2.1736 1.3127 -6.5375 23 9 1.5097 1.7774 -4.4016 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7093 1.1618 3.4844 28 1 2.2490 -1.6318 -1.1525 29 1 3.7094 -3.2230 -5.2395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590434300.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:40 Heat of formation + Delta-G solvation = -154.173243 kcal Electronic energy + Delta-G solvation = -21974.000006 eV Core-core repulsion = 17870.747370 eV Total energy + Delta-G solvation = -4103.252635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.16018 -47.75285 -47.53709 -43.79783 -38.91601 -35.19230 -34.94614 -32.40492 -31.65443 -29.11641 -26.44939 -25.28360 -24.14884 -22.61530 -21.18193 -19.78606 -19.10701 -18.65492 -18.29457 -17.84952 -16.96346 -16.37795 -15.78167 -15.29185 -14.67713 -14.50993 -14.39514 -14.29948 -14.11986 -14.00738 -13.69641 -13.62814 -13.15973 -12.70690 -12.45040 -11.85067 -11.58895 -11.17372 -11.10835 -10.97546 -10.78071 -10.37528 -10.25285 -9.64816 -9.48110 -9.09839 -8.58491 -8.03637 -6.14399 -4.23933 0.53118 1.57625 1.87366 2.83654 3.25832 3.30696 3.31737 3.47123 3.58531 3.63025 3.86501 4.21148 4.26769 4.34516 4.78310 5.14168 5.16176 5.18719 5.77585 6.77757 6.90905 7.00042 7.08556 7.30988 7.48892 7.65585 7.85491 8.09557 8.50848 8.67914 8.92635 9.42881 10.91646 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.004882 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.853884 B = 5734.460521 C = 6271.826296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.677 5.677 13 C 0.566 3.434 14 O -0.525 6.525 15 C 0.035 3.965 16 N -0.462 5.462 17 C 0.212 3.788 18 O -0.177 6.177 19 C -0.101 4.101 20 C 0.566 3.434 21 F -0.162 7.162 22 F -0.173 7.173 23 F -0.120 7.120 24 H 0.028 0.972 25 H 0.093 0.907 26 H 0.017 0.983 27 H 0.266 0.734 28 H 0.399 0.601 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -5.023 -16.065 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.324 5.324 13 C 0.348 3.652 14 O -0.402 6.402 15 C -0.087 4.087 16 N -0.191 5.191 17 C -0.015 4.015 18 O -0.063 6.063 19 C -0.159 4.159 20 C 0.510 3.490 21 F -0.143 7.143 22 F -0.155 7.155 23 F -0.100 7.100 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.703 -4.440 -15.433 16.481 hybrid contribution 0.523 -0.594 0.157 0.807 sum 4.226 -5.034 -15.276 16.630 Atomic orbital electron populations 1.22089 0.97973 0.99375 1.01182 1.18918 0.91353 0.94135 0.79429 0.92843 1.21154 1.32740 1.13406 0.90120 0.91929 1.24875 0.94736 0.94942 0.99041 1.69888 1.35690 1.22321 1.24110 0.86470 0.79189 0.79584 0.81644 1.20142 1.21104 1.20105 1.46454 1.62319 1.14150 1.09459 1.16853 0.80006 0.86365 0.82022 1.90902 1.51261 1.14197 1.83843 1.22424 1.01102 0.90121 0.95094 1.71006 1.14976 1.13540 1.19575 1.28479 0.97167 0.90768 0.85095 1.84336 1.63598 1.18105 1.40248 1.23147 1.10193 0.91185 0.91331 1.16461 0.76068 0.81740 0.74725 1.93271 1.49336 1.76881 1.94782 1.93233 1.91615 1.96738 1.33866 1.93487 1.57093 1.86660 1.72798 0.95284 0.88839 0.96429 0.92429 0.76713 0.71748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.15 0.34 -3.31 15 2 C 0.26 6.68 2.56 -69.08 -0.18 6.51 15 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 15 4 C -0.54 -14.20 8.73 -34.44 -0.30 -14.50 15 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -24.65 11.32 55.43 0.63 -24.02 15 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 12 N -0.68 -14.65 5.07 -56.01 -0.28 -14.94 15 13 C 0.57 11.80 7.73 -12.52 -0.10 11.71 15 14 O -0.52 -12.25 12.80 5.27 0.07 -12.18 15 15 C 0.04 0.60 6.96 -83.02 -0.58 0.02 15 16 N -0.46 -6.43 11.06 -11.48 -0.13 -6.56 15 17 C 0.21 1.98 13.19 51.96 0.69 2.66 15 18 O -0.18 -2.05 10.72 6.52 0.07 -1.98 15 19 C -0.10 -1.52 6.75 -35.08 -0.24 -1.75 15 20 C 0.57 8.61 3.34 36.00 0.12 8.73 15 21 F -0.16 -2.48 17.30 2.25 0.04 -2.44 15 22 F -0.17 -2.33 17.30 2.25 0.04 -2.29 15 23 F -0.12 -2.14 13.48 2.25 0.03 -2.11 15 24 H 0.03 0.67 8.14 -51.92 -0.42 0.25 15 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 15 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.40 7.87 8.27 -40.82 -0.34 7.54 15 29 H 0.27 0.73 8.06 -52.49 -0.42 0.30 15 LS Contribution 276.03 15.07 4.16 4.16 Total: -1.00 -30.81 276.03 -2.59 -33.40 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -1.86 Total: 1.63 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -0.33 Total: 11.78 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.22 Total: -45.51 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.14 Total: -14.17 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.81 -2.59 -33.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434300.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.774 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds