Wall clock time and date at job start Mon Mar 30 2020 23:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47434 * 2 1 4 4 C 1.50710 * 109.47048 * 119.99992 * 2 1 3 5 5 H 1.08000 * 120.00037 * 119.99698 * 4 2 1 6 6 C 1.37877 * 119.99770 * 300.00357 * 4 2 1 7 7 N 1.31518 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99762 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47367 * 59.99757 * 8 6 4 10 10 H 1.48502 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46679 * 299.99315 * 8 6 4 12 12 N 1.46502 * 109.47399 * 239.99722 * 2 1 3 13 13 C 1.34772 * 119.99562 * 84.99938 * 12 2 1 14 14 O 1.21607 * 120.00378 * 0.02562 * 13 12 2 15 15 C 1.47420 * 119.99827 * 180.02562 * 13 12 2 16 16 N 1.36075 * 126.44969 * 0.02719 * 15 13 12 17 17 C 1.29937 * 108.47981 * 179.73820 * 16 15 13 18 18 O 1.34048 * 109.24116 * 359.97438 * 17 16 15 19 19 C 1.34254 * 108.23048 * 0.02562 * 18 17 16 20 20 C 1.50696 * 126.52951 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47354 * 269.95733 * 20 19 18 22 22 F 1.39900 * 109.47059 * 29.95279 * 20 19 18 23 23 F 1.39899 * 109.47672 * 149.95142 * 20 19 18 24 24 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47447 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47052 * 59.99964 * 1 2 3 27 27 H 0.96999 * 120.00074 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99906 * 265.00208 * 12 2 1 29 29 H 1.07992 * 125.37760 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0079 10 1 1.8277 -0.4193 5.2205 11 1 1.8278 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3570 14 8 1.8582 1.1617 -2.4116 15 6 2.6380 -0.7134 -3.5608 16 7 2.9964 -2.0231 -3.6484 17 6 3.3701 -2.2672 -4.8688 18 8 3.2666 -1.1453 -5.5951 19 6 2.8121 -0.1675 -4.7953 20 6 2.5445 1.2622 -5.1895 21 9 3.7019 2.0238 -4.9955 22 9 2.1736 1.3127 -6.5375 23 9 1.5097 1.7774 -4.4016 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7093 1.1618 3.4844 28 1 2.2490 -1.6318 -1.1525 29 1 3.7094 -3.2230 -5.2395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590434300.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:40 Heat of formation + Delta-G solvation = -178.368855 kcal Electronic energy + Delta-G solvation = -21975.049206 eV Core-core repulsion = 17870.747370 eV Total energy + Delta-G solvation = -4104.301836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.37064 -48.92195 -48.81547 -44.81919 -40.59841 -36.85374 -36.26862 -34.34114 -32.80354 -31.01669 -27.70260 -27.33691 -25.41087 -23.79793 -22.70181 -21.48383 -20.43520 -19.84847 -19.53137 -19.22790 -18.04202 -17.96031 -17.30172 -16.92868 -16.13753 -15.96842 -15.77253 -15.68797 -15.30860 -15.24748 -15.06432 -14.95689 -14.73650 -14.43353 -13.95639 -13.71021 -13.04304 -12.93197 -12.77473 -12.66078 -12.29151 -12.17948 -12.16354 -11.20597 -11.14035 -10.77651 -10.60740 -9.88476 -8.18475 -6.36197 -0.62617 0.49009 0.87868 1.45859 1.48028 1.55849 1.71867 2.05318 2.07382 2.43674 2.48061 2.86933 3.02264 3.07700 3.12120 3.48380 3.88029 4.15723 4.71374 4.87784 4.90880 5.04512 5.35599 5.50990 5.62506 5.81122 6.05218 6.06145 6.67335 6.74641 7.17694 7.37583 8.87756 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.004882 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.853884 B = 5734.460521 C = 6271.826296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.009 0.991 4 C -0.551 4.551 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.264 1.264 12 N -0.677 5.677 13 C 0.563 3.437 14 O -0.557 6.557 15 C 0.016 3.984 16 N -0.494 5.494 17 C 0.257 3.743 18 O -0.166 6.166 19 C -0.098 4.098 20 C 0.565 3.435 21 F -0.165 7.165 22 F -0.161 7.161 23 F -0.140 7.140 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.409 0.591 29 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -7.561 -17.161 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.027 0.973 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.189 1.189 12 N -0.325 5.325 13 C 0.347 3.653 14 O -0.437 6.437 15 C -0.106 4.106 16 N -0.222 5.222 17 C 0.030 3.970 18 O -0.052 6.052 19 C -0.156 4.156 20 C 0.510 3.490 21 F -0.146 7.146 22 F -0.142 7.142 23 F -0.121 7.121 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.348 0.652 Dipole moment (debyes) X Y Z Total from point charges 4.871 -7.011 -16.548 18.620 hybrid contribution 0.204 0.158 0.358 0.441 sum 5.075 -6.853 -16.190 18.298 Atomic orbital electron populations 1.21905 0.97724 0.99624 1.00008 1.18534 0.91519 0.92228 0.81051 0.97326 1.21460 1.32996 1.13744 0.90679 0.91016 1.25773 0.94759 0.95559 1.02197 1.70032 1.36694 1.23700 1.24831 0.85376 0.78625 0.78718 0.77495 1.19638 1.21006 1.18869 1.46173 1.62902 1.14470 1.08958 1.17293 0.79028 0.86133 0.82844 1.90878 1.52349 1.15801 1.84672 1.21703 1.03257 0.91783 0.93879 1.70976 1.17174 1.11878 1.22192 1.29984 0.92492 0.91293 0.83210 1.84400 1.63149 1.18036 1.39648 1.22852 1.10247 0.91455 0.91074 1.16478 0.75516 0.82089 0.74942 1.93261 1.49358 1.77096 1.94856 1.93253 1.91485 1.96717 1.32749 1.93443 1.58047 1.87081 1.73560 0.94131 0.90969 0.96549 0.92381 0.75527 0.65244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.16 15 2 C 0.27 14.15 2.56 44.25 0.11 14.26 15 3 H 0.01 0.54 7.58 -2.39 -0.02 0.52 15 4 C -0.55 -29.42 8.73 25.60 0.22 -29.19 15 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 15 6 C 0.02 0.95 5.30 84.65 0.45 1.40 15 7 N -0.91 -52.14 11.32 21.45 0.24 -51.90 15 8 Si 0.97 41.93 29.54 68.60 2.03 43.95 15 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 11 H -0.26 -10.82 7.11 99.48 0.71 -10.12 15 12 N -0.68 -29.81 5.07 -449.37 -2.28 -32.09 15 13 C 0.56 23.97 7.73 86.66 0.67 24.64 15 14 O -0.56 -27.13 12.80 -4.05 -0.05 -27.18 15 15 C 0.02 0.51 6.96 40.41 0.28 0.79 15 16 N -0.49 -12.42 11.06 -305.15 -3.37 -15.79 15 17 C 0.26 3.55 13.19 130.52 1.72 5.27 15 18 O -0.17 -3.24 10.72 0.43 0.00 -3.24 15 19 C -0.10 -2.78 6.75 25.19 0.17 -2.61 15 20 C 0.57 16.99 3.34 71.23 0.24 17.23 15 21 F -0.16 -5.03 17.30 44.97 0.78 -4.25 15 22 F -0.16 -4.13 17.30 44.97 0.78 -3.35 15 23 F -0.14 -5.16 13.48 44.97 0.61 -4.56 15 24 H 0.04 1.91 8.14 -2.38 -0.02 1.89 15 25 H 0.07 3.99 6.07 -2.39 -0.01 3.97 15 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 28 H 0.41 16.10 8.27 -92.71 -0.77 15.34 15 29 H 0.33 -0.60 8.06 -2.91 -0.02 -0.63 15 Total: -1.00 -69.69 276.03 3.73 -65.95 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.47 Total: 6.84 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 4.53 Total: 25.62 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -5.41 Total: -99.78 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.05 Total: -30.42 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 2.16 Total: -12.16 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -69.69 3.73 -65.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434300.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.416 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds