Wall clock time and date at job start Tue Mar 31 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 120.35338 * 2 1 4 4 N 1.31766 * 120.69927 * 180.02562 * 3 2 1 5 5 C 1.32039 * 121.95299 * 359.97438 * 4 3 2 6 6 C 1.38536 * 120.89068 * 359.97438 * 5 4 3 7 7 C 1.38308 * 120.35703 * 180.02562 * 2 1 3 8 8 N 1.39704 * 111.82529 * 179.97438 * 6 5 4 9 9 C 1.34772 * 125.01865 * 179.97438 * 8 6 5 10 10 O 1.21284 * 120.00355 * 180.02562 * 9 8 6 11 11 C 1.50703 * 119.99952 * 0.03350 * 9 8 6 12 12 S 1.80997 * 109.47171 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99994 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00280 * 0.02562 * 13 12 11 15 15 C 1.38798 * 119.99998 * 179.97438 * 13 12 11 16 16 N 1.31635 * 120.00287 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00026 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47136 * 89.99985 * 17 15 13 19 19 H 1.48499 * 109.47250 * 209.99934 * 17 15 13 20 20 H 1.48497 * 109.46949 * 329.99772 * 17 15 13 21 21 C 1.46562 * 109.96359 * 0.02562 * 8 6 5 22 22 C 1.51327 * 130.73309 * 179.97438 * 5 4 3 23 23 H 1.08993 * 109.47224 * 89.99743 * 1 2 3 24 24 H 1.09003 * 109.47191 * 210.00314 * 1 2 3 25 25 H 1.09000 * 109.47184 * 329.99546 * 1 2 3 26 26 H 1.07998 * 119.65455 * 359.74706 * 3 2 1 27 27 H 1.07999 * 120.68107 * 359.97438 * 7 2 1 28 28 H 1.09001 * 109.46875 * 299.99617 * 11 9 8 29 29 H 1.08994 * 109.47639 * 59.99508 * 11 9 8 30 30 H 0.96997 * 119.99776 * 180.02562 * 16 15 13 31 31 H 1.09008 * 110.29437 * 241.06774 * 21 8 6 32 32 H 1.09004 * 110.38150 * 118.97425 * 21 8 6 33 33 H 1.09003 * 110.40105 * 298.79619 * 22 5 4 34 34 H 1.09005 * 110.40160 * 61.09212 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1931 0.0000 4 7 3.5233 1.2011 -0.0005 5 6 4.2289 0.0850 -0.0005 6 6 3.6040 -1.1515 0.0005 7 6 2.2060 -1.1935 -0.0005 8 7 4.5272 -2.2000 -0.0003 9 6 4.2099 -3.5098 0.0009 10 8 5.0879 -4.3465 0.0005 11 6 2.7641 -3.9349 0.0025 12 16 2.6666 -5.7422 0.0031 13 6 0.9174 -5.9542 0.0058 14 1 0.2687 -5.0907 0.0062 15 6 0.3730 -7.2310 0.0064 16 7 -0.9337 -7.3895 0.0079 17 14 1.4949 -8.7247 0.0051 18 1 1.7938 -9.1205 1.4048 19 1 0.8220 -9.8486 -0.6942 20 1 2.7608 -8.3922 -0.6965 21 6 5.8918 -1.6652 -0.0014 22 6 5.7258 -0.1370 -0.0016 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6658 2.1285 -0.0041 27 1 1.6830 -2.1384 -0.0005 28 1 2.2715 -3.5438 0.8928 29 1 2.2697 -3.5450 -0.8871 30 1 -1.3141 -8.2818 0.0087 31 1 6.4236 -1.9877 -0.8966 32 1 6.4266 -1.9875 0.8921 33 1 6.1731 0.2937 -0.8974 34 1 6.1748 0.2963 0.8923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590610815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:10 Heat of formation + Delta-G solvation = 9.434639 kcal Electronic energy + Delta-G solvation = -18827.897804 eV Core-core repulsion = 15852.182445 eV Total energy + Delta-G solvation = -2975.715359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51965 -39.21988 -36.92850 -34.15107 -32.52199 -31.82320 -30.52795 -29.19086 -26.83006 -25.70814 -24.15133 -23.23401 -21.58602 -19.81495 -17.95030 -17.32092 -16.86388 -16.59199 -16.02523 -15.30258 -15.00153 -14.79847 -14.15695 -14.12025 -14.00973 -13.11670 -12.90384 -12.89564 -12.78457 -12.60470 -12.54888 -12.36152 -12.01195 -11.89395 -11.33502 -11.07868 -10.78943 -10.71935 -10.03857 -9.86643 -9.53606 -9.34839 -9.08241 -8.60585 -8.00776 -7.04531 -6.36804 -4.10654 0.89335 1.11336 2.37399 2.66591 2.93310 3.27100 3.43472 3.45085 3.62023 3.83489 4.12804 4.25950 4.46362 4.57459 4.76484 4.83656 4.89598 4.95432 5.01771 5.02260 5.11516 5.39063 5.49249 5.51718 5.52268 5.58240 5.62857 5.74833 5.78290 5.91299 6.08497 6.19151 6.53251 7.21612 7.83037 7.85799 8.00230 8.32526 9.08838 10.72160 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.005264 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.394543 B = 5317.810644 C = 6577.044334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C 0.072 3.928 4 N -0.448 5.448 5 C 0.071 3.929 6 C 0.111 3.889 7 C -0.121 4.121 8 N -0.553 5.553 9 C 0.542 3.458 10 O -0.490 6.490 11 C -0.128 4.128 12 S -0.138 6.138 13 C -0.523 4.523 14 H 0.090 0.910 15 C 0.098 3.902 16 N -0.877 5.877 17 Si 0.855 3.145 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.236 1.236 21 C 0.108 3.892 22 C -0.072 4.072 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.272 0.728 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 16.890 -0.126 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.087 4.087 4 N -0.156 5.156 5 C -0.071 4.071 6 C 0.012 3.988 7 C -0.150 4.150 8 N -0.278 5.278 9 C 0.332 3.668 10 O -0.362 6.362 11 C -0.278 4.278 12 S 0.088 5.912 13 C -0.671 4.671 14 H 0.108 0.892 15 C -0.111 4.111 16 N -0.513 5.513 17 Si 0.680 3.320 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.160 1.160 21 C -0.014 4.014 22 C -0.110 4.110 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.177 0.823 27 H 0.171 0.829 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.203 16.103 -0.129 18.548 hybrid contribution -1.329 -0.615 0.028 1.465 sum 7.874 15.488 -0.101 17.375 Atomic orbital electron populations 1.20779 0.89499 1.03652 1.03130 1.20739 0.97795 0.93029 0.98561 1.22455 0.88717 0.97585 0.99947 1.66736 1.08340 1.29634 1.10864 1.21147 0.96226 0.87270 1.02429 1.19270 0.91318 0.89126 0.99066 1.21625 0.90917 1.00496 1.01927 1.45942 1.06694 1.04600 1.70538 1.20320 0.91719 0.79792 0.74994 1.90738 1.50129 1.49423 1.45897 1.23678 0.94082 1.04165 1.05877 1.84837 1.11690 0.97211 1.97419 1.22255 0.88241 0.97244 1.59340 0.89239 1.24687 0.94858 0.98511 0.93026 1.69928 1.10048 1.23714 1.47630 0.86758 0.82528 0.82700 0.80018 1.19117 1.19781 1.15954 1.22099 0.83066 0.92197 1.04059 1.21053 0.90569 0.94549 1.04811 0.90395 0.90604 0.90893 0.82334 0.82924 0.87793 0.87749 0.91818 0.89441 0.89427 0.88315 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.03 36.01 0.36 -0.67 16 2 C -0.10 -1.13 5.89 -104.59 -0.62 -1.75 16 3 C 0.07 0.80 10.87 -17.57 -0.19 0.61 16 4 N -0.45 -5.73 10.35 -9.17 -0.09 -5.82 16 5 C 0.07 0.90 7.41 -82.09 -0.61 0.29 16 6 C 0.11 1.56 6.60 -83.55 -0.55 1.01 16 7 C -0.12 -1.64 8.64 -38.95 -0.34 -1.98 16 8 N -0.55 -8.24 3.13 -112.86 -0.35 -8.59 16 9 C 0.54 9.99 7.82 -10.99 -0.09 9.90 16 10 O -0.49 -10.41 16.15 5.55 0.09 -10.32 16 11 C -0.13 -2.49 3.99 36.01 0.14 -2.35 16 12 S -0.14 -3.42 18.55 -107.50 -1.99 -5.42 16 13 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 14 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 15 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 16 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16 17 Si 0.86 21.29 27.74 -169.99 -4.72 16.58 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 21 C 0.11 1.21 7.06 -3.63 -0.03 1.19 16 22 C -0.07 -0.68 6.93 -27.20 -0.19 -0.87 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.15 2.17 4.36 -52.49 -0.23 1.94 16 28 H 0.10 1.90 6.93 -51.92 -0.36 1.54 16 29 H 0.10 1.91 6.92 -51.92 -0.36 1.55 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -33.07 301.13 -7.54 -40.61 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.90 Total: -0.30 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.88 Total: -6.22 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.33 Total: -39.46 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.72 Total: 16.58 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.07 -7.54 -40.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590610815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.045 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds