Wall clock time and date at job start Tue Mar 31 2020 00:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 120.35338 * 2 1 4 4 N 1.31766 * 120.69927 * 180.02562 * 3 2 1 5 5 C 1.32039 * 121.95299 * 359.97438 * 4 3 2 6 6 C 1.38536 * 120.89068 * 359.97438 * 5 4 3 7 7 C 1.38308 * 120.35703 * 180.02562 * 2 1 3 8 8 N 1.39704 * 111.82529 * 179.97438 * 6 5 4 9 9 C 1.34772 * 125.01865 * 179.97438 * 8 6 5 10 10 O 1.21284 * 120.00355 * 180.02562 * 9 8 6 11 11 C 1.50703 * 119.99952 * 0.03350 * 9 8 6 12 12 S 1.80997 * 109.47171 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99994 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00280 * 0.02562 * 13 12 11 15 15 C 1.38798 * 119.99998 * 179.97438 * 13 12 11 16 16 N 1.31635 * 120.00287 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00026 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47136 * 89.99985 * 17 15 13 19 19 H 1.48499 * 109.47250 * 209.99934 * 17 15 13 20 20 H 1.48497 * 109.46949 * 329.99772 * 17 15 13 21 21 C 1.46562 * 109.96359 * 0.02562 * 8 6 5 22 22 C 1.51327 * 130.73309 * 179.97438 * 5 4 3 23 23 H 1.08993 * 109.47224 * 89.99743 * 1 2 3 24 24 H 1.09003 * 109.47191 * 210.00314 * 1 2 3 25 25 H 1.09000 * 109.47184 * 329.99546 * 1 2 3 26 26 H 1.07998 * 119.65455 * 359.74706 * 3 2 1 27 27 H 1.07999 * 120.68107 * 359.97438 * 7 2 1 28 28 H 1.09001 * 109.46875 * 299.99617 * 11 9 8 29 29 H 1.08994 * 109.47639 * 59.99508 * 11 9 8 30 30 H 0.96997 * 119.99776 * 180.02562 * 16 15 13 31 31 H 1.09008 * 110.29437 * 241.06774 * 21 8 6 32 32 H 1.09004 * 110.38150 * 118.97425 * 21 8 6 33 33 H 1.09003 * 110.40105 * 298.79619 * 22 5 4 34 34 H 1.09005 * 110.40160 * 61.09212 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1931 0.0000 4 7 3.5233 1.2011 -0.0005 5 6 4.2289 0.0850 -0.0005 6 6 3.6040 -1.1515 0.0005 7 6 2.2060 -1.1935 -0.0005 8 7 4.5272 -2.2000 -0.0003 9 6 4.2099 -3.5098 0.0009 10 8 5.0879 -4.3465 0.0005 11 6 2.7641 -3.9349 0.0025 12 16 2.6666 -5.7422 0.0031 13 6 0.9174 -5.9542 0.0058 14 1 0.2687 -5.0907 0.0062 15 6 0.3730 -7.2310 0.0064 16 7 -0.9337 -7.3895 0.0079 17 14 1.4949 -8.7247 0.0051 18 1 1.7938 -9.1205 1.4048 19 1 0.8220 -9.8486 -0.6942 20 1 2.7608 -8.3922 -0.6965 21 6 5.8918 -1.6652 -0.0014 22 6 5.7258 -0.1370 -0.0016 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6658 2.1285 -0.0041 27 1 1.6830 -2.1384 -0.0005 28 1 2.2715 -3.5438 0.8928 29 1 2.2697 -3.5450 -0.8871 30 1 -1.3141 -8.2818 0.0087 31 1 6.4236 -1.9877 -0.8966 32 1 6.4266 -1.9875 0.8921 33 1 6.1731 0.2937 -0.8974 34 1 6.1748 0.2963 0.8923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590610815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:09 Heat of formation + Delta-G solvation = -11.657401 kcal Electronic energy + Delta-G solvation = -18828.812424 eV Core-core repulsion = 15852.182445 eV Total energy + Delta-G solvation = -2976.629979 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.57874 -40.46462 -38.05288 -35.16742 -34.70911 -32.86748 -31.56739 -30.53552 -27.92173 -27.66391 -25.15576 -24.27970 -22.54237 -21.06866 -19.85332 -18.55750 -18.00334 -17.69641 -17.24076 -17.04790 -16.58853 -16.03651 -15.61589 -15.35647 -14.99125 -14.93947 -14.15795 -14.06937 -13.67640 -13.64580 -13.57420 -13.33103 -13.19365 -13.06477 -12.96201 -12.81609 -12.69376 -11.90781 -11.75989 -11.44661 -11.20716 -10.67579 -10.44942 -10.31770 -9.11601 -9.02148 -8.54920 -6.28378 -0.10525 0.10409 0.80206 1.29003 1.30013 1.34400 1.47005 1.70294 2.21270 2.54030 2.67394 2.83444 2.92983 3.13966 3.52881 3.65341 3.90754 3.93434 3.95465 4.08547 4.12116 4.15851 4.18785 4.51490 4.69349 4.79671 4.83429 4.88207 4.88494 5.06917 5.16480 5.30162 5.60147 5.67150 6.00256 6.07770 6.62202 6.88817 6.89606 8.57207 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.005264 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.394543 B = 5317.810644 C = 6577.044334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C 0.081 3.919 4 N -0.461 5.461 5 C 0.072 3.928 6 C 0.080 3.920 7 C -0.136 4.136 8 N -0.548 5.548 9 C 0.545 3.455 10 O -0.527 6.527 11 C -0.111 4.111 12 S -0.165 6.165 13 C -0.531 4.531 14 H 0.065 0.935 15 C 0.051 3.949 16 N -0.912 5.912 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.257 1.257 20 H -0.237 1.237 21 C 0.101 3.899 22 C -0.062 4.062 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.194 0.806 27 H 0.138 0.862 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.278 0.722 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 18.837 -0.150 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.078 4.078 4 N -0.169 5.169 5 C -0.069 4.069 6 C -0.018 4.018 7 C -0.164 4.164 8 N -0.272 5.272 9 C 0.334 3.666 10 O -0.402 6.402 11 C -0.261 4.261 12 S 0.062 5.938 13 C -0.678 4.678 14 H 0.083 0.917 15 C -0.155 4.155 16 N -0.550 5.550 17 Si 0.733 3.267 18 H -0.186 1.186 19 H -0.181 1.181 20 H -0.161 1.161 21 C -0.020 4.020 22 C -0.099 4.099 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.211 0.789 27 H 0.156 0.844 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.231 18.106 -0.155 20.797 hybrid contribution -1.723 -0.961 0.040 1.973 sum 8.508 17.145 -0.115 19.140 Atomic orbital electron populations 1.20837 0.87899 1.04339 1.03837 1.21000 0.98963 0.92463 0.97914 1.23063 0.88455 0.98664 0.97580 1.66877 1.09081 1.29387 1.11565 1.21610 0.97750 0.86565 1.00963 1.19468 0.91459 0.89460 1.01366 1.21707 0.91213 1.00869 1.02647 1.45809 1.08569 1.03485 1.69318 1.19921 0.90519 0.80967 0.75187 1.90717 1.50535 1.50667 1.48319 1.23627 0.95940 0.99796 1.06779 1.84689 1.09026 1.02566 1.97549 1.22389 0.89885 0.96712 1.58862 0.91664 1.25501 0.96150 1.01171 0.92708 1.70002 1.11543 1.24785 1.48669 0.85924 0.80750 0.79765 0.80309 1.18608 1.18144 1.16074 1.22419 0.81193 0.93408 1.04971 1.21158 0.88714 0.93068 1.07003 0.89593 0.91912 0.88233 0.78932 0.84446 0.86939 0.86897 0.91239 0.88604 0.88585 0.86047 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.03 71.24 0.71 -1.12 16 2 C -0.10 -2.15 5.89 -19.84 -0.12 -2.26 16 3 C 0.08 1.56 10.87 84.71 0.92 2.48 16 4 N -0.46 -10.49 10.35 -182.93 -1.89 -12.39 16 5 C 0.07 1.66 7.41 42.80 0.32 1.98 16 6 C 0.08 2.17 6.60 38.35 0.25 2.42 16 7 C -0.14 -3.63 8.64 22.68 0.20 -3.43 16 8 N -0.55 -15.87 3.13 -629.37 -1.97 -17.84 16 9 C 0.54 20.10 7.82 87.66 0.69 20.79 16 10 O -0.53 -22.51 16.15 -3.04 -0.05 -22.56 16 11 C -0.11 -4.40 3.99 71.24 0.28 -4.11 16 12 S -0.17 -8.30 18.55 -56.49 -1.05 -9.34 16 13 C -0.53 -30.42 10.04 67.95 0.68 -29.74 16 14 H 0.07 3.92 8.03 -2.91 -0.02 3.90 16 15 C 0.05 2.93 5.50 84.86 0.47 3.39 16 16 N -0.91 -54.52 13.97 21.65 0.30 -54.22 16 17 Si 0.91 44.13 27.74 68.60 1.90 46.03 16 18 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 21 C 0.10 2.08 7.06 86.61 0.61 2.69 16 22 C -0.06 -0.98 6.93 30.29 0.21 -0.77 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 25 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 26 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.14 4.01 4.36 -2.91 -0.01 4.00 16 28 H 0.11 4.22 6.93 -2.39 -0.02 4.20 16 29 H 0.11 4.24 6.92 -2.40 -0.02 4.22 16 30 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -71.85 301.13 3.56 -68.29 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.08 Total: 9.73 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.23 Total: -7.69 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.56 Total: -84.45 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.05 Total: -9.34 kcal Total: -71.85 3.56 -68.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590610815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.631 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds