Wall clock time and date at job start Tue Mar 31 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36059 * 116.99929 * 2 1 4 4 C 1.37363 * 119.77189 * 359.97438 * 3 2 1 5 5 C 1.41252 * 120.49086 * 179.97438 * 4 3 2 6 6 N 1.34768 * 128.70204 * 180.02562 * 5 4 3 7 7 C 1.28036 * 118.10786 * 180.02562 * 6 5 4 8 8 C 1.50696 * 124.78532 * 180.26748 * 7 6 5 9 9 S 1.75819 * 110.42765 * 0.02562 * 7 6 5 10 10 C 1.39801 * 118.50511 * 0.06760 * 5 4 3 11 11 C 1.39409 * 120.53625 * 359.97360 * 10 5 4 12 12 C 1.38100 * 120.19359 * 359.97438 * 11 10 5 13 13 N 1.40054 * 120.09637 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99869 * 359.97438 * 13 12 11 15 15 C 1.50692 * 109.47347 * 180.02562 * 14 13 12 16 16 H 1.08008 * 120.00193 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00441 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99615 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00256 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46960 * 90.00170 * 19 17 15 21 21 H 1.48504 * 109.47174 * 209.99768 * 19 17 15 22 22 H 1.48495 * 109.47385 * 330.00154 * 19 17 15 23 23 H 1.08998 * 109.47443 * 59.99351 * 1 2 3 24 24 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.09012 * 109.46756 * 299.99775 * 1 2 3 26 26 H 1.08000 * 119.75670 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.46883 * 269.69735 * 8 7 6 28 28 H 1.09006 * 109.46949 * 29.69655 * 8 7 6 29 29 H 1.08999 * 109.47522 * 149.69580 * 8 7 6 30 30 H 1.07995 * 119.90426 * 180.02562 * 11 10 5 31 31 H 0.97001 * 120.00615 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47234 * 300.00352 * 14 13 12 33 33 H 1.08999 * 109.47066 * 59.99935 * 14 13 12 34 34 H 0.96995 * 120.00071 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2939 2.3613 -0.0005 5 6 1.9194 3.6278 0.0000 6 7 1.3494 4.8491 0.0001 7 6 2.1177 5.8733 0.0001 8 6 1.6436 7.3037 0.0060 9 16 3.8040 5.3755 -0.0007 10 6 3.3163 3.6821 -0.0004 11 6 4.0707 2.5098 -0.0007 12 6 3.4428 1.2798 -0.0001 13 7 4.2027 0.1033 -0.0010 14 6 5.6659 0.1764 -0.0031 15 6 6.2385 -1.2175 -0.0043 16 1 5.5785 -2.0725 -0.0031 17 6 7.6049 -1.4015 -0.0058 18 7 8.4086 -0.3605 -0.0056 19 14 8.3147 -3.1294 -0.0065 20 1 8.5013 -3.5872 -1.4068 21 1 9.6251 -3.1266 0.6921 22 1 7.3820 -4.0480 0.6945 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.2159 2.2959 -0.0014 27 1 1.5305 7.6532 -1.0202 28 1 0.6838 7.3662 0.5189 29 1 2.3733 7.9263 0.5235 30 1 5.1493 2.5636 -0.0006 31 1 3.7602 -0.7599 -0.0002 32 1 6.0019 0.7076 -0.8936 33 1 6.0043 0.7079 0.8863 34 1 9.3699 -0.4899 -0.0070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:11 Heat of formation + Delta-G solvation = 12.588664 kcal Electronic energy + Delta-G solvation = -18526.926515 eV Core-core repulsion = 15551.347924 eV Total energy + Delta-G solvation = -2975.578591 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.31763 -38.62490 -36.70794 -34.38895 -32.62740 -30.63489 -29.96045 -28.48378 -27.10212 -25.67007 -23.36349 -23.03871 -20.94116 -20.36706 -18.58692 -17.23033 -16.70570 -16.26113 -15.81585 -15.66751 -14.84195 -14.67093 -14.22919 -13.87060 -13.64893 -13.35869 -13.33479 -13.00041 -12.67042 -12.38568 -12.17923 -11.93873 -11.72486 -11.47780 -11.03193 -10.92930 -10.66023 -10.57132 -10.22224 -9.49162 -9.47791 -9.34925 -9.24008 -8.55504 -7.65792 -6.54522 -6.25415 -4.31084 0.87239 1.52621 1.59107 2.05676 2.75928 3.20972 3.27416 3.30220 3.37451 4.04923 4.07861 4.18278 4.39969 4.91123 5.11205 5.12111 5.17303 5.20844 5.35320 5.40056 5.46964 5.54334 5.75717 5.90905 5.96838 6.09391 6.22644 6.57530 6.73971 7.01465 7.31878 7.39568 7.59200 7.86062 7.93981 8.11253 8.52904 8.80961 9.35398 10.85163 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.004576 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.165463 B = 6117.584188 C = 7493.000718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.067 3.933 4 C -0.119 4.119 5 C 0.027 3.973 6 N -0.451 5.451 7 C 0.085 3.915 8 C -0.072 4.072 9 S 0.020 5.980 10 C -0.117 4.117 11 C -0.159 4.159 12 C 0.246 3.754 13 N -0.707 5.707 14 C 0.247 3.753 15 C -0.541 4.541 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.134 0.866 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.402 0.598 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 9.436 0.018 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.093 4.093 6 N -0.164 5.164 7 C -0.201 4.201 8 C -0.132 4.132 9 S 0.272 5.728 10 C -0.236 4.236 11 C -0.191 4.191 12 C 0.131 3.869 13 N -0.328 5.328 14 C 0.126 3.874 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.237 0.763 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.806 9.862 0.024 16.164 hybrid contribution -0.251 -1.876 -0.021 1.893 sum -13.057 7.986 0.003 15.305 Atomic orbital electron populations 1.22996 0.78749 1.03610 1.01170 1.86065 1.21013 1.26000 1.89691 1.18136 0.90397 0.84510 1.05201 1.20180 0.99256 0.88541 1.06186 1.18367 0.88502 0.90903 1.11484 1.65932 1.38082 0.97691 1.14737 1.27110 0.90612 0.98525 1.03881 1.20400 1.02323 0.86899 1.03591 1.84814 1.11183 0.98574 1.78200 1.23091 0.96397 0.96675 1.07409 1.19504 0.99918 0.87428 1.12215 1.17251 0.86871 0.88609 0.94152 1.45615 1.07972 1.04062 1.75196 1.19251 0.72923 0.98279 0.96976 1.21160 0.91992 0.91641 1.53093 0.91795 1.24921 0.96721 0.97707 0.94524 1.69937 1.03949 1.29630 1.49046 0.86386 0.78498 0.83615 0.78301 1.20399 1.20943 1.19691 0.92843 0.88415 0.92834 0.84864 0.89853 0.89590 0.90175 0.84077 0.76335 0.95703 0.95691 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.80 101.05 0.99 1.31 16 2 O -0.31 -4.91 9.73 -19.93 -0.19 -5.11 16 3 C 0.07 1.17 6.68 -39.33 -0.26 0.90 16 4 C -0.12 -1.95 9.09 -38.76 -0.35 -2.30 16 5 C 0.03 0.49 6.94 -84.85 -0.59 -0.10 16 6 N -0.45 -7.48 10.56 -7.76 -0.08 -7.56 16 7 C 0.08 1.19 7.54 -13.86 -0.10 1.09 16 8 C -0.07 -0.65 10.49 36.00 0.38 -0.27 16 9 S 0.02 0.31 23.37 -107.50 -2.51 -2.20 16 10 C -0.12 -2.14 6.53 -38.56 -0.25 -2.39 16 11 C -0.16 -3.14 9.33 -39.20 -0.37 -3.50 16 12 C 0.25 4.86 6.67 -83.58 -0.56 4.31 16 13 N -0.71 -15.10 5.73 -59.69 -0.34 -15.44 16 14 C 0.25 6.16 4.67 -5.20 -0.02 6.14 16 15 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 16 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.05 0.52 7.64 -51.93 -0.40 0.12 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.52 7.64 -51.92 -0.40 0.12 16 26 H 0.13 1.84 6.20 -52.49 -0.33 1.52 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.14 2.89 6.71 -52.49 -0.35 2.54 16 31 H 0.40 8.22 7.68 -40.82 -0.31 7.91 16 32 H 0.03 0.67 7.95 -51.93 -0.41 0.25 16 33 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -30.05 306.26 -8.19 -38.24 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.83 Total: 4.19 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.56 Total: -7.94 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.31 Total: -47.47 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.51 Total: -2.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.05 -8.19 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.833 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds