Wall clock time and date at job start Tue Mar 31 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36059 * 116.99929 * 2 1 4 4 C 1.37363 * 119.77189 * 359.97438 * 3 2 1 5 5 C 1.41252 * 120.49086 * 179.97438 * 4 3 2 6 6 N 1.34768 * 128.70204 * 180.02562 * 5 4 3 7 7 C 1.28036 * 118.10786 * 180.02562 * 6 5 4 8 8 C 1.50696 * 124.78532 * 180.26748 * 7 6 5 9 9 S 1.75819 * 110.42765 * 0.02562 * 7 6 5 10 10 C 1.39801 * 118.50511 * 0.06760 * 5 4 3 11 11 C 1.39409 * 120.53625 * 359.97360 * 10 5 4 12 12 C 1.38100 * 120.19359 * 359.97438 * 11 10 5 13 13 N 1.40054 * 120.09637 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99869 * 359.97438 * 13 12 11 15 15 C 1.50692 * 109.47347 * 180.02562 * 14 13 12 16 16 H 1.08008 * 120.00193 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00441 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99615 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00256 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46960 * 90.00170 * 19 17 15 21 21 H 1.48504 * 109.47174 * 209.99768 * 19 17 15 22 22 H 1.48495 * 109.47385 * 330.00154 * 19 17 15 23 23 H 1.08998 * 109.47443 * 59.99351 * 1 2 3 24 24 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.09012 * 109.46756 * 299.99775 * 1 2 3 26 26 H 1.08000 * 119.75670 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.46883 * 269.69735 * 8 7 6 28 28 H 1.09006 * 109.46949 * 29.69655 * 8 7 6 29 29 H 1.08999 * 109.47522 * 149.69580 * 8 7 6 30 30 H 1.07995 * 119.90426 * 180.02562 * 11 10 5 31 31 H 0.97001 * 120.00615 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47234 * 300.00352 * 14 13 12 33 33 H 1.08999 * 109.47066 * 59.99935 * 14 13 12 34 34 H 0.96995 * 120.00071 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2939 2.3613 -0.0005 5 6 1.9194 3.6278 0.0000 6 7 1.3494 4.8491 0.0001 7 6 2.1177 5.8733 0.0001 8 6 1.6436 7.3037 0.0060 9 16 3.8040 5.3755 -0.0007 10 6 3.3163 3.6821 -0.0004 11 6 4.0707 2.5098 -0.0007 12 6 3.4428 1.2798 -0.0001 13 7 4.2027 0.1033 -0.0010 14 6 5.6659 0.1764 -0.0031 15 6 6.2385 -1.2175 -0.0043 16 1 5.5785 -2.0725 -0.0031 17 6 7.6049 -1.4015 -0.0058 18 7 8.4086 -0.3605 -0.0056 19 14 8.3147 -3.1294 -0.0065 20 1 8.5013 -3.5872 -1.4068 21 1 9.6251 -3.1266 0.6921 22 1 7.3820 -4.0480 0.6945 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.2159 2.2959 -0.0014 27 1 1.5305 7.6532 -1.0202 28 1 0.6838 7.3662 0.5189 29 1 2.3733 7.9263 0.5235 30 1 5.1493 2.5636 -0.0006 31 1 3.7602 -0.7599 -0.0002 32 1 6.0019 0.7076 -0.8936 33 1 6.0043 0.7079 0.8863 34 1 9.3699 -0.4899 -0.0070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:09 Heat of formation + Delta-G solvation = -7.308614 kcal Electronic energy + Delta-G solvation = -18527.789325 eV Core-core repulsion = 15551.347924 eV Total energy + Delta-G solvation = -2976.441401 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64236 -39.85417 -38.15255 -35.97980 -34.48977 -31.81905 -31.33077 -29.87153 -28.40201 -27.14046 -24.99352 -24.48386 -22.47227 -21.60513 -20.00194 -18.84187 -18.02359 -17.65334 -17.45875 -16.80479 -16.65043 -15.79924 -15.54199 -15.22837 -15.20685 -14.99940 -14.53146 -14.16563 -14.06676 -13.82677 -13.57640 -13.05359 -12.95979 -12.82721 -12.69697 -12.44242 -12.25034 -11.91141 -11.89014 -11.47460 -10.92832 -10.72261 -10.61282 -10.44552 -8.94828 -8.32610 -8.11174 -6.46668 -0.42033 0.12370 0.33053 0.78335 1.40760 1.41558 1.42514 1.53390 2.21529 2.32416 2.65102 2.68072 3.00603 3.02931 3.61340 4.02031 4.15605 4.32987 4.39429 4.42342 4.58470 4.61108 4.72341 4.75313 4.80284 4.85934 4.96327 5.06234 5.23076 5.25622 5.40055 5.51479 5.82695 6.15595 6.40018 6.63273 6.69376 7.00647 7.25883 8.79200 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.004576 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.165463 B = 6117.584188 C = 7493.000718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.078 3.922 4 C -0.119 4.119 5 C 0.031 3.969 6 N -0.475 5.475 7 C 0.111 3.889 8 C -0.074 4.074 9 S 0.031 5.969 10 C -0.152 4.152 11 C -0.168 4.168 12 C 0.217 3.783 13 N -0.716 5.716 14 C 0.269 3.731 15 C -0.558 4.558 16 H 0.071 0.929 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.978 3.022 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.262 1.262 23 H 0.066 0.934 24 H 0.123 0.877 25 H 0.066 0.934 26 H 0.164 0.836 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.404 0.596 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 10.093 0.002 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.028 3.972 4 C -0.142 4.142 5 C -0.089 4.089 6 N -0.189 5.189 7 C -0.175 4.175 8 C -0.134 4.134 9 S 0.283 5.717 10 C -0.271 4.271 11 C -0.198 4.198 12 C 0.105 3.895 13 N -0.341 5.341 14 C 0.147 3.853 15 C -0.596 4.596 16 H 0.089 0.911 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.802 3.198 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.186 1.186 23 H 0.084 0.916 24 H 0.141 0.859 25 H 0.084 0.916 26 H 0.181 0.819 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.240 0.760 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.986 10.544 0.007 18.324 hybrid contribution 0.252 -1.814 -0.018 1.832 sum -14.734 8.730 -0.011 17.126 Atomic orbital electron populations 1.23388 0.75989 1.05808 1.02365 1.86062 1.23813 1.25069 1.89342 1.18045 0.89443 0.85679 1.03988 1.20447 1.00611 0.87626 1.05484 1.18766 0.88312 0.92138 1.09659 1.66072 1.38061 0.97499 1.17250 1.28195 0.89527 1.00212 0.99541 1.20729 1.03569 0.83513 1.05623 1.84766 1.12543 0.96563 1.77821 1.23272 0.97114 0.97723 1.09026 1.19399 0.98983 0.88608 1.12856 1.17440 0.88200 0.87890 0.95929 1.45165 1.06278 1.04840 1.77796 1.18682 0.75328 0.97064 0.94251 1.21539 0.92662 0.92402 1.53024 0.91080 1.25900 0.97072 1.02078 0.93820 1.70069 1.04330 1.32072 1.49896 0.85251 0.77689 0.78295 0.78596 1.19629 1.20508 1.18631 0.91565 0.85889 0.91558 0.81902 0.87525 0.88029 0.87815 0.86464 0.76003 0.98615 0.98600 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.80 113.37 1.11 1.46 16 2 O -0.33 -10.03 9.73 -94.22 -0.92 -10.95 16 3 C 0.08 2.74 6.68 22.43 0.15 2.89 16 4 C -0.12 -3.78 9.09 22.80 0.21 -3.57 16 5 C 0.03 1.08 6.94 39.81 0.28 1.36 16 6 N -0.48 -14.73 10.56 -178.40 -1.88 -16.62 16 7 C 0.11 2.85 7.54 88.66 0.67 3.52 16 8 C -0.07 -1.03 10.49 71.23 0.75 -0.29 16 9 S 0.03 0.91 23.37 -56.49 -1.32 -0.41 16 10 C -0.15 -5.70 6.53 22.93 0.15 -5.55 16 11 C -0.17 -7.04 9.33 22.52 0.21 -6.83 16 12 C 0.22 8.99 6.67 38.17 0.25 9.25 16 13 N -0.72 -32.39 5.73 -342.75 -1.96 -34.35 16 14 C 0.27 14.41 4.67 85.63 0.40 14.81 16 15 C -0.56 -30.91 9.28 25.60 0.24 -30.68 16 16 H 0.07 3.73 7.60 -2.91 -0.02 3.71 16 17 C 0.01 0.63 5.46 84.66 0.46 1.09 16 18 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 19 Si 0.98 42.80 29.54 68.60 2.03 44.83 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H 0.07 1.11 7.64 -2.39 -0.02 1.09 16 24 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.11 7.64 -2.38 -0.02 1.09 16 26 H 0.16 4.07 6.20 -2.91 -0.02 4.05 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 5.34 6.71 -2.91 -0.02 5.32 16 31 H 0.40 17.29 7.68 -92.71 -0.71 16.58 16 32 H 0.00 -0.23 7.95 -2.39 -0.02 -0.25 16 33 H 0.00 -0.22 7.95 -2.39 -0.02 -0.24 16 34 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -67.48 306.26 1.53 -65.95 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.43 Total: 18.15 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.87 Total: -12.53 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.56 Total: -105.04 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.92 Total: -10.95 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.32 Total: -0.41 kcal Total: -67.48 1.53 -65.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.641 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds