Wall clock time and date at job start Tue Mar 31 2020 00:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35955 * 123.44893 * 224.89229 * 3 2 1 5 5 S 1.70448 * 110.82655 * 179.72894 * 4 3 2 6 6 C 1.75498 * 92.44375 * 0.35564 * 5 4 3 7 7 C 1.50706 * 124.72417 * 179.90510 * 6 5 4 8 8 N 1.46900 * 109.46840 * 269.70186 * 7 6 5 9 9 C 1.48720 * 111.01831 * 54.48842 * 8 7 6 10 10 C 1.54381 * 104.51692 * 158.96284 * 9 8 7 11 11 C 1.54257 * 105.14978 * 336.27274 * 10 9 8 12 12 O 1.42910 * 110.32027 * 241.04997 * 11 10 9 13 13 C 1.50697 * 110.32628 * 118.84329 * 11 10 9 14 14 H 1.07995 * 120.00073 * 241.44522 * 13 11 10 15 15 C 1.37883 * 119.99811 * 61.45328 * 13 11 10 16 16 N 1.31514 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46901 * 60.00150 * 17 15 13 19 19 H 1.48501 * 109.47188 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47596 * 299.99981 * 17 15 13 21 21 C 1.48567 * 110.99718 * 169.99824 * 8 7 6 22 22 C 1.32829 * 110.56073 * 359.64146 * 6 5 4 23 23 H 1.07999 * 124.58233 * 0.02562 * 4 3 2 24 24 H 1.09003 * 109.47369 * 149.69996 * 7 6 5 25 25 H 1.09000 * 109.46724 * 29.69894 * 7 6 5 26 26 H 1.09004 * 110.38960 * 40.24251 * 9 8 7 27 27 H 1.08996 * 110.50963 * 277.74694 * 9 8 7 28 28 H 1.09002 * 110.32526 * 217.32092 * 10 9 8 29 29 H 1.08998 * 110.32190 * 95.21733 * 10 9 8 30 30 H 0.96699 * 114.00154 * 298.54485 * 12 11 10 31 31 H 0.97002 * 119.99478 * 180.02562 * 16 15 13 32 32 H 1.08999 * 110.41133 * 82.17552 * 21 8 7 33 33 H 1.09004 * 110.50861 * 319.79003 * 21 8 7 34 34 H 1.07995 * 123.46922 * 180.23903 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3170 0.8046 0.8006 5 16 4.9804 0.5362 0.5431 6 6 4.6708 -0.6823 -0.6814 7 6 5.7387 -1.4355 -1.4323 8 7 6.0851 -0.7026 -2.6574 9 6 6.4696 0.7006 -2.3488 10 6 7.2952 1.1535 -3.5722 11 6 7.8359 -0.1485 -4.1981 12 8 9.2650 -0.1482 -4.1874 13 6 7.3220 -0.3053 -5.6060 14 1 6.7075 -1.1548 -5.8651 15 6 7.6364 0.6358 -6.5635 16 7 8.3852 1.6699 -6.2481 17 14 7.0000 0.4410 -8.3088 18 1 5.5151 0.4252 -8.2953 19 1 7.4748 1.5774 -9.1385 20 1 7.5034 -0.8339 -8.8800 21 6 7.2933 -1.2809 -3.3000 22 6 3.3644 -0.8525 -0.8504 23 1 2.9127 1.5137 1.5078 24 1 5.3683 -2.4266 -1.6943 25 1 6.6243 -1.5328 -0.8043 26 1 7.0777 0.7377 -1.4450 27 1 5.5824 1.3238 -2.2371 28 1 8.1197 1.7929 -3.2568 29 1 6.6595 1.6801 -4.2839 30 1 9.6620 0.5698 -4.6991 31 1 8.6061 2.3321 -6.9216 32 1 7.0248 -2.1486 -3.9027 33 1 8.0318 -1.5560 -2.5470 34 1 2.9412 -1.5562 -1.5518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:08 Heat of formation + Delta-G solvation = 19.099253 kcal Electronic energy + Delta-G solvation = -18873.378315 eV Core-core repulsion = 15898.082045 eV Total energy + Delta-G solvation = -2975.296270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.84200 -37.99078 -36.11963 -34.89209 -32.10999 -31.62394 -28.99200 -27.91485 -25.75940 -24.80661 -23.79056 -21.14870 -19.72551 -19.31436 -18.02328 -17.04273 -16.98621 -15.54794 -14.91780 -14.66059 -14.52634 -14.16585 -13.82479 -13.65262 -13.47430 -13.24535 -12.77363 -12.55061 -12.24787 -12.20867 -11.91879 -11.62922 -11.29370 -11.10517 -11.04214 -10.83665 -10.57473 -10.50041 -10.36050 -9.94126 -9.10236 -9.01103 -8.57388 -8.52561 -8.13299 -7.91714 -6.16627 -4.22171 0.58214 1.34001 1.72990 1.87121 2.60149 3.28610 3.32801 3.36610 3.37244 3.94353 4.35669 4.51348 4.61474 4.92270 5.12918 5.21366 5.30436 5.62033 5.65797 5.78915 5.88811 5.99245 6.07873 6.11945 6.18781 6.29382 6.46040 6.82873 7.00099 7.16645 7.38700 7.47085 7.60828 7.63048 7.84876 8.20443 8.79958 9.41362 9.50434 10.90860 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004573 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.889644 B = 6121.341199 C = 6740.799510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.280 3.720 3 C -0.054 4.054 4 C -0.204 4.204 5 S 0.214 5.786 6 C -0.175 4.175 7 C 0.110 3.890 8 N -0.494 5.494 9 C 0.031 3.969 10 C -0.120 4.120 11 C 0.250 3.750 12 O -0.595 6.595 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.052 3.948 22 C -0.087 4.087 23 H 0.172 0.828 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.383 0.617 31 H 0.266 0.734 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -1.746 13.367 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.036 4.036 3 C -0.074 4.074 4 C -0.345 4.345 5 S 0.481 5.519 6 C -0.293 4.293 7 C -0.020 4.020 8 N -0.218 5.218 9 C -0.097 4.097 10 C -0.159 4.159 11 C 0.210 3.790 12 O -0.404 6.404 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.075 4.075 22 C -0.117 4.117 23 H 0.190 0.810 24 H 0.113 0.887 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.044 -1.540 13.937 14.902 hybrid contribution -0.625 0.089 -1.357 1.496 sum -5.669 -1.451 12.581 13.875 Atomic orbital electron populations 1.81241 1.11881 1.08580 1.08664 1.25069 0.91860 0.93377 0.93323 1.16233 0.85444 1.02773 1.02910 1.25518 0.99898 1.04384 1.04700 1.83300 1.00907 1.34388 1.33335 1.24341 0.98208 1.03649 1.03065 1.20847 0.93803 0.96837 0.90530 1.65579 1.34467 1.02354 1.19440 1.23254 0.98421 0.90103 0.97945 1.22853 0.98479 0.99891 0.94670 1.19241 0.78633 0.88432 0.92691 1.86081 1.21701 1.56808 1.75815 1.21599 1.31451 1.08668 0.94099 0.91997 1.24990 0.94624 0.94665 0.99156 1.69683 1.37717 1.12062 1.34620 0.86549 0.79331 0.77613 0.83877 1.20146 1.21317 1.20184 1.23044 0.88909 0.98899 0.96682 1.20960 0.91325 1.00187 0.99224 0.81003 0.88693 0.93671 0.95311 0.91390 0.93004 0.90558 0.76678 0.92410 0.90230 0.94832 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.19 18.54 41.83 0.78 -5.41 16 2 C 0.28 3.51 15.62 -22.47 -0.35 3.16 16 3 C -0.05 -0.60 5.84 -106.36 -0.62 -1.22 16 4 C -0.20 -1.88 10.78 29.91 0.32 -1.56 16 5 S 0.21 2.09 21.88 -107.50 -2.35 -0.26 16 6 C -0.18 -2.07 4.97 -36.17 -0.18 -2.25 16 7 C 0.11 1.47 5.53 -4.97 -0.03 1.44 16 8 N -0.49 -8.75 5.48 -231.26 -1.27 -10.02 16 9 C 0.03 0.55 4.99 -2.09 -0.01 0.54 16 10 C -0.12 -2.67 5.55 -25.35 -0.14 -2.81 16 11 C 0.25 5.97 1.05 -90.39 -0.10 5.87 16 12 O -0.60 -14.94 12.94 -35.23 -0.46 -15.40 16 13 C -0.52 -13.65 8.10 -34.44 -0.28 -13.93 16 14 H 0.06 1.64 7.53 -52.49 -0.40 1.24 16 15 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 16 N -0.90 -23.68 10.82 55.43 0.60 -23.08 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.05 1.05 5.77 -2.18 -0.01 1.04 16 22 C -0.09 -0.99 10.20 -39.02 -0.40 -1.39 16 23 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 26 H 0.03 0.47 7.71 -51.93 -0.40 0.07 16 27 H 0.07 1.16 7.81 -51.93 -0.41 0.76 16 28 H 0.05 1.16 7.98 -51.93 -0.41 0.74 16 29 H 0.08 1.88 7.23 -51.93 -0.38 1.51 16 30 H 0.38 9.77 7.33 45.56 0.33 10.10 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.08 1.62 7.67 -51.93 -0.40 1.22 16 33 H 0.03 0.65 7.76 -51.93 -0.40 0.25 16 34 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -28.01 305.41 -8.27 -36.28 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.27 Total: 7.12 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.88 Total: -9.46 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.11 Total: -38.51 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.46 Total: -15.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.35 Total: -0.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.01 -8.27 -36.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.376 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds