Wall clock time and date at job start Tue Mar 31 2020 00:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35955 * 123.44893 * 224.89229 * 3 2 1 5 5 S 1.70448 * 110.82655 * 179.72894 * 4 3 2 6 6 C 1.75498 * 92.44375 * 0.35564 * 5 4 3 7 7 C 1.50706 * 124.72417 * 179.90510 * 6 5 4 8 8 N 1.46900 * 109.46840 * 269.70186 * 7 6 5 9 9 C 1.48720 * 111.01831 * 54.48842 * 8 7 6 10 10 C 1.54381 * 104.51692 * 158.96284 * 9 8 7 11 11 C 1.54257 * 105.14978 * 336.27274 * 10 9 8 12 12 O 1.42910 * 110.32027 * 241.04997 * 11 10 9 13 13 C 1.50697 * 110.32628 * 118.84329 * 11 10 9 14 14 H 1.07995 * 120.00073 * 241.44522 * 13 11 10 15 15 C 1.37883 * 119.99811 * 61.45328 * 13 11 10 16 16 N 1.31514 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46901 * 60.00150 * 17 15 13 19 19 H 1.48501 * 109.47188 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47596 * 299.99981 * 17 15 13 21 21 C 1.48567 * 110.99718 * 169.99824 * 8 7 6 22 22 C 1.32829 * 110.56073 * 359.64146 * 6 5 4 23 23 H 1.07999 * 124.58233 * 0.02562 * 4 3 2 24 24 H 1.09003 * 109.47369 * 149.69996 * 7 6 5 25 25 H 1.09000 * 109.46724 * 29.69894 * 7 6 5 26 26 H 1.09004 * 110.38960 * 40.24251 * 9 8 7 27 27 H 1.08996 * 110.50963 * 277.74694 * 9 8 7 28 28 H 1.09002 * 110.32526 * 217.32092 * 10 9 8 29 29 H 1.08998 * 110.32190 * 95.21733 * 10 9 8 30 30 H 0.96699 * 114.00154 * 298.54485 * 12 11 10 31 31 H 0.97002 * 119.99478 * 180.02562 * 16 15 13 32 32 H 1.08999 * 110.41133 * 82.17552 * 21 8 7 33 33 H 1.09004 * 110.50861 * 319.79003 * 21 8 7 34 34 H 1.07995 * 123.46922 * 180.23903 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3170 0.8046 0.8006 5 16 4.9804 0.5362 0.5431 6 6 4.6708 -0.6823 -0.6814 7 6 5.7387 -1.4355 -1.4323 8 7 6.0851 -0.7026 -2.6574 9 6 6.4696 0.7006 -2.3488 10 6 7.2952 1.1535 -3.5722 11 6 7.8359 -0.1485 -4.1981 12 8 9.2650 -0.1482 -4.1874 13 6 7.3220 -0.3053 -5.6060 14 1 6.7075 -1.1548 -5.8651 15 6 7.6364 0.6358 -6.5635 16 7 8.3852 1.6699 -6.2481 17 14 7.0000 0.4410 -8.3088 18 1 5.5151 0.4252 -8.2953 19 1 7.4748 1.5774 -9.1385 20 1 7.5034 -0.8339 -8.8800 21 6 7.2933 -1.2809 -3.3000 22 6 3.3644 -0.8525 -0.8504 23 1 2.9127 1.5137 1.5078 24 1 5.3683 -2.4266 -1.6943 25 1 6.6243 -1.5328 -0.8043 26 1 7.0777 0.7377 -1.4450 27 1 5.5824 1.3238 -2.2371 28 1 8.1197 1.7929 -3.2568 29 1 6.6595 1.6801 -4.2839 30 1 9.6620 0.5698 -4.6991 31 1 8.6061 2.3321 -6.9216 32 1 7.0248 -2.1486 -3.9027 33 1 8.0318 -1.5560 -2.5470 34 1 2.9412 -1.5562 -1.5518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:08 Heat of formation + Delta-G solvation = -0.007902 kcal Electronic energy + Delta-G solvation = -18874.206864 eV Core-core repulsion = 15898.082045 eV Total energy + Delta-G solvation = -2976.124819 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20342 -39.09137 -37.26858 -36.41812 -34.11081 -32.88729 -30.33823 -29.57299 -27.08096 -26.04202 -25.16515 -22.47678 -21.30639 -20.56440 -19.02517 -18.88432 -17.84093 -17.01679 -16.80059 -16.15147 -15.75655 -15.52404 -15.10470 -14.72049 -14.59897 -14.47581 -14.06683 -13.85117 -13.78545 -13.41418 -13.13724 -13.12584 -12.87861 -12.66159 -12.50486 -12.32594 -12.24047 -12.04058 -11.83515 -11.70320 -10.90849 -10.55695 -10.09750 -9.89359 -9.34533 -9.23116 -8.15204 -6.26968 -0.23005 0.53829 0.89808 0.96483 1.44436 1.45308 1.52335 1.64902 2.43724 2.44514 3.02340 3.07464 3.27088 3.70506 3.99551 4.06882 4.29102 4.33156 4.37859 4.47955 4.53220 4.67474 4.76590 4.89367 4.94454 5.11456 5.14310 5.29347 5.29766 5.42905 5.71704 5.83253 5.99157 6.19434 6.29265 6.44839 6.77806 7.41166 7.49256 8.90222 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004573 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.889644 B = 6121.341199 C = 6740.799510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.301 3.699 3 C -0.075 4.075 4 C -0.182 4.182 5 S 0.249 5.751 6 C -0.200 4.200 7 C 0.111 3.889 8 N -0.505 5.505 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.231 3.769 12 O -0.602 6.602 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.028 3.972 16 N -0.914 5.914 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.275 1.275 21 C 0.061 3.939 22 C -0.083 4.083 23 H 0.200 0.800 24 H 0.107 0.893 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.376 0.624 31 H 0.267 0.733 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -1.673 14.733 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.015 4.015 3 C -0.094 4.094 4 C -0.323 4.323 5 S 0.517 5.483 6 C -0.318 4.318 7 C -0.018 4.018 8 N -0.230 5.230 9 C -0.084 4.084 10 C -0.153 4.153 11 C 0.191 3.809 12 O -0.410 6.410 13 C -0.579 4.579 14 H 0.070 0.930 15 C -0.172 4.172 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.066 4.066 22 C -0.113 4.113 23 H 0.217 0.783 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.226 0.774 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.387 -1.478 15.316 16.302 hybrid contribution -0.477 0.086 -1.733 1.800 sum -5.864 -1.392 13.582 14.859 Atomic orbital electron populations 1.81260 1.13073 1.10141 1.10230 1.25234 0.91994 0.92152 0.92097 1.16185 0.84611 1.04248 1.04397 1.25886 0.99673 1.03208 1.03540 1.83240 1.00591 1.32752 1.31749 1.24211 0.97812 1.05198 1.04534 1.20858 0.94781 0.97079 0.89052 1.65502 1.32917 1.02358 1.22217 1.23106 0.98367 0.90426 0.96478 1.22632 0.98128 0.98744 0.95782 1.19536 0.77889 0.90758 0.92717 1.86076 1.22706 1.56627 1.75594 1.21866 1.31750 1.08506 0.95827 0.92993 1.25603 0.94893 0.94519 1.02161 1.69762 1.38083 1.12298 1.35352 0.85708 0.78610 0.77554 0.80271 1.20205 1.20834 1.20024 1.22839 0.89993 0.97386 0.96429 1.21043 0.91395 0.99936 0.98926 0.78262 0.87541 0.92495 0.93308 0.90296 0.93921 0.93752 0.77418 0.92418 0.90861 0.93978 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.25 18.54 19.00 0.35 -12.90 16 2 C 0.30 7.08 15.62 88.33 1.38 8.46 16 3 C -0.08 -1.47 5.84 -20.99 -0.12 -1.59 16 4 C -0.18 -2.71 10.78 67.29 0.73 -1.99 16 5 S 0.25 4.01 21.88 -56.49 -1.24 2.77 16 6 C -0.20 -4.20 4.97 24.51 0.12 -4.08 16 7 C 0.11 2.71 5.53 85.56 0.47 3.18 16 8 N -0.50 -17.10 5.48 -885.56 -4.85 -21.95 16 9 C 0.04 1.50 4.99 86.42 0.43 1.93 16 10 C -0.11 -5.06 5.55 31.49 0.17 -4.89 16 11 C 0.23 11.05 1.05 -10.65 -0.01 11.04 16 12 O -0.60 -30.49 12.94 -148.98 -1.93 -32.42 16 13 C -0.54 -28.76 8.10 25.60 0.21 -28.55 16 14 H 0.05 2.79 7.53 -2.91 -0.02 2.76 16 15 C 0.03 1.47 5.02 84.66 0.43 1.89 16 16 N -0.91 -48.62 10.82 21.45 0.23 -48.38 16 17 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 C 0.06 2.43 5.77 86.45 0.50 2.93 16 22 C -0.08 -1.71 10.20 22.66 0.23 -1.48 16 23 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 24 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 1.27 7.88 -2.39 -0.02 1.25 16 26 H 0.05 1.47 7.71 -2.38 -0.02 1.45 16 27 H 0.08 2.53 7.81 -2.39 -0.02 2.51 16 28 H 0.04 1.91 7.98 -2.39 -0.02 1.90 16 29 H 0.04 2.21 7.23 -2.39 -0.02 2.20 16 30 H 0.38 19.61 7.33 -74.06 -0.54 19.07 16 31 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.07 2.96 7.67 -2.39 -0.02 2.94 16 33 H 0.04 1.57 7.76 -2.39 -0.02 1.55 16 34 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -60.14 305.41 -0.28 -60.42 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.59 Total: 21.05 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.53 Total: -13.13 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -4.27 Total: -83.23 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.93 Total: -32.42 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.24 Total: 2.77 kcal Total: -60.14 -0.28 -60.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.412 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds