Wall clock time and date at job start Tue Mar 31 2020 00:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36624 * 125.46175 * 0.62489 * 3 2 1 5 5 C 1.37614 * 113.27229 * 179.75942 * 4 3 2 6 6 C 1.33718 * 115.08830 * 0.45102 * 5 4 3 7 7 C 1.50706 * 124.50412 * 179.82846 * 6 5 4 8 8 N 1.46900 * 109.46840 * 89.72277 * 7 6 5 9 9 C 1.48720 * 111.01831 * 54.48842 * 8 7 6 10 10 C 1.54381 * 104.51692 * 158.96284 * 9 8 7 11 11 C 1.54257 * 105.14978 * 336.27274 * 10 9 8 12 12 O 1.42910 * 110.32027 * 241.04997 * 11 10 9 13 13 C 1.50697 * 110.32628 * 118.84329 * 11 10 9 14 14 H 1.07995 * 120.00073 * 241.44522 * 13 11 10 15 15 C 1.37883 * 119.99811 * 61.45328 * 13 11 10 16 16 N 1.31514 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46935 * 90.00162 * 17 15 13 19 19 H 1.48500 * 109.47103 * 209.99421 * 17 15 13 20 20 H 1.48498 * 109.47343 * 330.00155 * 17 15 13 21 21 C 1.48567 * 110.99718 * 169.99824 * 8 7 6 22 22 S 1.70607 * 110.98279 * 359.56030 * 6 5 4 23 23 H 1.08002 * 123.36414 * 359.97438 * 4 3 2 24 24 H 1.07991 * 122.45595 * 180.25016 * 5 4 3 25 25 H 1.09003 * 109.47369 * 329.72088 * 7 6 5 26 26 H 1.09000 * 109.46724 * 209.71985 * 7 6 5 27 27 H 1.09004 * 110.38960 * 40.24251 * 9 8 7 28 28 H 1.08996 * 110.50963 * 277.74694 * 9 8 7 29 29 H 1.09002 * 110.32526 * 217.32092 * 10 9 8 30 30 H 1.08998 * 110.32190 * 95.21733 * 10 9 8 31 31 H 0.96699 * 114.00154 * 298.54485 * 12 11 10 32 32 H 0.97002 * 119.99478 * 180.02562 * 16 15 13 33 33 H 1.08999 * 110.41133 * 82.17552 * 21 8 7 34 34 H 1.09001 * 110.41003 * 319.73948 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3612 -1.1117 -0.0121 5 6 4.7062 -0.8205 -0.0143 6 6 5.0041 0.4829 0.0053 7 6 6.4051 1.0384 0.0108 8 7 6.8597 1.2341 -1.3723 9 6 5.9013 2.0782 -2.1343 10 6 6.7277 2.6326 -3.3147 11 6 8.1945 2.5795 -2.8400 12 8 8.7568 3.8931 -2.8180 13 6 9.0027 1.6779 -3.7372 14 1 9.4775 0.7970 -3.3312 15 6 9.1360 1.9778 -5.0764 16 7 8.5583 3.0508 -5.5706 17 14 10.1384 0.8606 -6.1883 18 1 9.2556 -0.1850 -6.7651 19 1 10.7379 1.6624 -7.2851 20 1 11.2185 0.2161 -5.3988 21 6 8.1329 1.9986 -1.4110 22 16 3.5874 1.4333 0.0156 23 1 2.9716 -2.1190 -0.0227 24 1 5.4654 -1.5884 -0.0274 25 1 7.0711 0.3394 0.5168 26 1 6.4149 1.9939 0.5352 27 1 5.5346 2.8937 -1.5109 28 1 5.0704 1.4761 -2.5017 29 1 6.4367 3.6605 -3.5309 30 1 6.5927 2.0079 -4.1977 31 1 8.7796 4.3257 -3.6825 32 1 8.6518 3.2616 -6.5128 33 1 8.9798 1.3358 -1.2332 34 1 8.1166 2.8018 -0.6744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:17 Heat of formation + Delta-G solvation = 21.325321 kcal Electronic energy + Delta-G solvation = -18863.366304 eV Core-core repulsion = 15888.166563 eV Total energy + Delta-G solvation = -2975.199741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.92981 -37.97819 -36.52711 -34.96579 -32.12629 -31.62488 -29.11835 -27.99072 -26.22975 -24.41133 -23.18416 -21.12983 -20.44642 -19.53545 -18.00969 -17.06176 -16.50833 -15.57339 -15.15778 -14.83927 -14.38331 -14.27495 -13.88886 -13.78997 -13.54607 -13.16812 -12.70659 -12.59838 -12.39307 -12.17080 -11.89165 -11.62601 -11.28196 -11.13601 -11.05973 -10.87548 -10.60422 -10.50171 -10.37111 -9.96515 -9.10334 -8.86333 -8.67233 -8.58092 -8.15066 -7.95761 -6.18210 -4.23909 0.32629 1.05409 1.74221 2.28924 2.76042 3.17198 3.25419 3.32542 3.36236 3.79396 4.34017 4.47273 4.65266 5.07819 5.10960 5.25618 5.38758 5.61734 5.63044 5.82113 5.86195 6.03758 6.06895 6.11752 6.23323 6.27354 6.43189 6.80640 6.96974 7.13891 7.27321 7.43193 7.57615 7.60567 7.83139 8.18474 8.78515 9.39697 9.48783 10.89316 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.004270 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.123340 B = 6556.256096 C = 6716.459173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.289 3.711 3 C -0.186 4.186 4 C -0.052 4.052 5 C -0.136 4.136 6 C -0.172 4.172 7 C 0.106 3.894 8 N -0.492 5.492 9 C 0.028 3.972 10 C -0.120 4.120 11 C 0.250 3.750 12 O -0.595 6.595 13 C -0.520 4.520 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.900 5.900 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.052 3.948 22 S 0.245 5.755 23 H 0.151 0.849 24 H 0.152 0.848 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.383 0.617 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 -4.336 10.596 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.027 4.027 3 C -0.307 4.307 4 C -0.089 4.089 5 C -0.167 4.167 6 C -0.292 4.292 7 C -0.024 4.024 8 N -0.217 5.217 9 C -0.100 4.100 10 C -0.159 4.159 11 C 0.210 3.790 12 O -0.404 6.404 13 C -0.558 4.558 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.540 5.540 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.075 4.075 22 S 0.513 5.487 23 H 0.169 0.831 24 H 0.169 0.831 25 H 0.115 0.885 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.581 -3.310 10.862 14.233 hybrid contribution 1.033 -1.296 -1.030 1.952 sum -7.548 -4.607 9.832 13.224 Atomic orbital electron populations 1.81283 1.11254 1.06860 1.10202 1.24354 0.90998 0.94138 0.93175 1.20385 0.89101 0.99420 1.21769 1.20710 0.92305 0.98384 0.97489 1.19902 0.96006 0.96040 1.04744 1.24275 1.00662 0.98172 1.06132 1.20911 0.88932 0.99749 0.92800 1.65593 1.03568 1.43996 1.08507 1.23294 0.95972 0.94236 0.96483 1.22854 0.96963 0.99548 0.96488 1.19246 0.89159 0.81339 0.89268 1.86081 1.85613 1.31598 1.37107 1.21630 1.31552 1.09343 0.93268 0.91917 1.25001 0.95150 0.95330 0.98018 1.69693 1.44092 1.25783 1.14473 0.86476 0.80325 0.80447 0.80034 1.20591 1.21260 1.19820 1.23057 0.91072 0.95022 0.98383 1.83322 0.92952 1.05347 1.67047 0.83147 0.83073 0.88485 0.93676 0.95329 0.91316 0.92971 0.90497 0.76646 0.92443 0.90125 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.89 18.54 41.84 0.78 -5.12 16 2 C 0.29 3.55 15.83 -22.47 -0.36 3.19 16 3 C -0.19 -2.03 6.32 -38.24 -0.24 -2.27 16 4 C -0.05 -0.50 10.24 -40.39 -0.41 -0.91 16 5 C -0.14 -1.42 10.00 -41.39 -0.41 -1.84 16 6 C -0.17 -2.02 4.85 -35.89 -0.17 -2.20 16 7 C 0.11 1.41 5.50 -4.97 -0.03 1.38 16 8 N -0.49 -8.65 5.48 -231.26 -1.27 -9.92 16 9 C 0.03 0.51 4.96 -2.09 -0.01 0.50 16 10 C -0.12 -2.67 5.55 -25.35 -0.14 -2.81 16 11 C 0.25 5.95 1.05 -90.39 -0.10 5.85 16 12 O -0.59 -14.94 12.94 -35.23 -0.46 -15.39 16 13 C -0.52 -13.56 8.10 -34.44 -0.28 -13.83 16 14 H 0.06 1.64 7.53 -52.49 -0.40 1.25 16 15 C 0.07 1.72 5.02 -17.82 -0.09 1.63 16 16 N -0.90 -23.62 10.82 55.43 0.60 -23.02 16 17 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.05 1.05 5.77 -2.18 -0.01 1.03 16 22 S 0.25 2.71 21.72 -107.50 -2.33 0.37 16 23 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 24 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 25 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 27 H 0.03 0.48 7.66 -51.93 -0.40 0.08 16 28 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 29 H 0.05 1.17 7.98 -51.93 -0.41 0.76 16 30 H 0.08 1.90 7.23 -51.93 -0.38 1.52 16 31 H 0.38 9.78 7.33 45.56 0.33 10.12 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.08 1.62 7.67 -51.93 -0.40 1.22 16 34 H 0.03 0.65 7.76 -51.93 -0.40 0.25 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -27.66 304.91 -8.63 -36.29 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.27 Total: 7.00 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.25 Total: -10.27 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.11 Total: -38.05 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.46 Total: -15.39 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.33 Total: 0.37 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.66 -8.63 -36.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.614 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds