Wall clock time and date at job start Tue Mar 31 2020 00:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36624 * 125.46175 * 0.62489 * 3 2 1 5 5 C 1.37614 * 113.27229 * 179.75942 * 4 3 2 6 6 C 1.33718 * 115.08830 * 0.45102 * 5 4 3 7 7 C 1.50706 * 124.50412 * 179.82846 * 6 5 4 8 8 N 1.46900 * 109.46840 * 89.72277 * 7 6 5 9 9 C 1.48720 * 111.01831 * 54.48842 * 8 7 6 10 10 C 1.54381 * 104.51692 * 158.96284 * 9 8 7 11 11 C 1.54257 * 105.14978 * 336.27274 * 10 9 8 12 12 O 1.42910 * 110.32027 * 241.04997 * 11 10 9 13 13 C 1.50697 * 110.32628 * 118.84329 * 11 10 9 14 14 H 1.07995 * 120.00073 * 241.44522 * 13 11 10 15 15 C 1.37883 * 119.99811 * 61.45328 * 13 11 10 16 16 N 1.31514 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46935 * 90.00162 * 17 15 13 19 19 H 1.48500 * 109.47103 * 209.99421 * 17 15 13 20 20 H 1.48498 * 109.47343 * 330.00155 * 17 15 13 21 21 C 1.48567 * 110.99718 * 169.99824 * 8 7 6 22 22 S 1.70607 * 110.98279 * 359.56030 * 6 5 4 23 23 H 1.08002 * 123.36414 * 359.97438 * 4 3 2 24 24 H 1.07991 * 122.45595 * 180.25016 * 5 4 3 25 25 H 1.09003 * 109.47369 * 329.72088 * 7 6 5 26 26 H 1.09000 * 109.46724 * 209.71985 * 7 6 5 27 27 H 1.09004 * 110.38960 * 40.24251 * 9 8 7 28 28 H 1.08996 * 110.50963 * 277.74694 * 9 8 7 29 29 H 1.09002 * 110.32526 * 217.32092 * 10 9 8 30 30 H 1.08998 * 110.32190 * 95.21733 * 10 9 8 31 31 H 0.96699 * 114.00154 * 298.54485 * 12 11 10 32 32 H 0.97002 * 119.99478 * 180.02562 * 16 15 13 33 33 H 1.08999 * 110.41133 * 82.17552 * 21 8 7 34 34 H 1.09001 * 110.41003 * 319.73948 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3612 -1.1117 -0.0121 5 6 4.7062 -0.8205 -0.0143 6 6 5.0041 0.4829 0.0053 7 6 6.4051 1.0384 0.0108 8 7 6.8597 1.2341 -1.3723 9 6 5.9013 2.0782 -2.1343 10 6 6.7277 2.6326 -3.3147 11 6 8.1945 2.5795 -2.8400 12 8 8.7568 3.8931 -2.8180 13 6 9.0027 1.6779 -3.7372 14 1 9.4775 0.7970 -3.3312 15 6 9.1360 1.9778 -5.0764 16 7 8.5583 3.0508 -5.5706 17 14 10.1384 0.8606 -6.1883 18 1 9.2556 -0.1850 -6.7651 19 1 10.7379 1.6624 -7.2851 20 1 11.2185 0.2161 -5.3988 21 6 8.1329 1.9986 -1.4110 22 16 3.5874 1.4333 0.0156 23 1 2.9716 -2.1190 -0.0227 24 1 5.4654 -1.5884 -0.0274 25 1 7.0711 0.3394 0.5168 26 1 6.4149 1.9939 0.5352 27 1 5.5346 2.8937 -1.5109 28 1 5.0704 1.4761 -2.5017 29 1 6.4367 3.6605 -3.5309 30 1 6.5927 2.0079 -4.1977 31 1 8.7796 4.3257 -3.6825 32 1 8.6518 3.2616 -6.5128 33 1 8.9798 1.3358 -1.2332 34 1 8.1166 2.8018 -0.6744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:16 Heat of formation + Delta-G solvation = 2.743630 kcal Electronic energy + Delta-G solvation = -18864.172067 eV Core-core repulsion = 15888.166563 eV Total energy + Delta-G solvation = -2976.005503 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26726 -39.08015 -37.59484 -36.56721 -34.11674 -32.90134 -30.43877 -29.63130 -27.52366 -26.03184 -24.30261 -22.21331 -21.64555 -21.28557 -19.00597 -18.97014 -17.42497 -17.02210 -16.80799 -16.31382 -15.74905 -15.56310 -15.19906 -15.02653 -14.63254 -14.34802 -14.11514 -13.89997 -13.76235 -13.34855 -13.24910 -13.13298 -12.80500 -12.72044 -12.46050 -12.31120 -12.23783 -12.06895 -11.85773 -11.74219 -10.92772 -10.56580 -10.10981 -9.76630 -9.48698 -9.29101 -8.15274 -6.27455 -0.53770 0.18661 0.89419 1.43613 1.44701 1.46459 1.55213 1.82868 2.26165 2.44237 2.88214 3.03289 3.23489 3.64283 3.98248 4.17939 4.26380 4.33167 4.43744 4.49452 4.62902 4.65913 4.74051 4.86013 5.02600 5.09471 5.25099 5.28029 5.39825 5.44365 5.70025 5.81625 5.94399 6.15411 6.26923 6.33213 6.77944 7.40338 7.48024 8.90397 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.004270 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.123340 B = 6556.256096 C = 6716.459173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.307 3.693 3 C -0.194 4.194 4 C -0.038 4.038 5 C -0.129 4.129 6 C -0.187 4.187 7 C 0.107 3.893 8 N -0.499 5.499 9 C 0.041 3.959 10 C -0.114 4.114 11 C 0.230 3.770 12 O -0.602 6.602 13 C -0.539 4.539 14 H 0.055 0.945 15 C 0.026 3.974 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.061 3.939 22 S 0.243 5.757 23 H 0.178 0.822 24 H 0.168 0.832 25 H 0.116 0.884 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.376 0.624 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.800 -5.752 11.521 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.008 4.008 3 C -0.315 4.315 4 C -0.075 4.075 5 C -0.160 4.160 6 C -0.307 4.307 7 C -0.022 4.022 8 N -0.224 5.224 9 C -0.087 4.087 10 C -0.153 4.153 11 C 0.191 3.809 12 O -0.411 6.411 13 C -0.578 4.578 14 H 0.073 0.927 15 C -0.174 4.174 16 N -0.557 5.557 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.067 4.067 22 S 0.512 5.488 23 H 0.195 0.805 24 H 0.185 0.815 25 H 0.134 0.866 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.226 0.774 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.718 -4.723 11.806 15.417 hybrid contribution 1.085 -0.875 -1.298 1.904 sum -7.634 -5.597 10.508 14.143 Atomic orbital electron populations 1.81303 1.12327 1.08038 1.11661 1.24474 0.91118 0.93080 0.92111 1.20426 0.88387 0.99908 1.22762 1.21002 0.91738 0.99247 0.95491 1.20148 0.96692 0.95875 1.03277 1.24197 0.99995 0.98860 1.07686 1.20957 0.90206 1.00836 0.90238 1.65523 1.02398 1.43005 1.11463 1.23133 0.95532 0.94865 0.95141 1.22634 0.97140 0.98401 0.97077 1.19551 0.89447 0.80435 0.91491 1.86076 1.85999 1.32362 1.36627 1.21891 1.32126 1.09631 0.94109 0.92676 1.25645 0.96037 0.96519 0.99177 1.69779 1.44662 1.26663 1.14597 0.85606 0.79024 0.78872 0.78367 1.20365 1.21028 1.19604 1.22863 0.92537 0.95207 0.96056 1.83350 0.92847 1.05423 1.67219 0.80485 0.81495 0.86637 0.92890 0.93791 0.90318 0.94186 0.93573 0.77416 0.92464 0.90381 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.38 18.54 19.01 0.35 -12.02 16 2 C 0.31 7.04 15.83 88.33 1.40 8.44 16 3 C -0.19 -3.75 6.32 23.14 0.15 -3.60 16 4 C -0.04 -0.60 10.24 21.74 0.22 -0.37 16 5 C -0.13 -2.24 10.00 21.10 0.21 -2.02 16 6 C -0.19 -3.85 4.85 24.66 0.12 -3.73 16 7 C 0.11 2.54 5.50 85.56 0.47 3.01 16 8 N -0.50 -16.61 5.48 -885.57 -4.85 -21.47 16 9 C 0.04 1.43 4.96 86.42 0.43 1.86 16 10 C -0.11 -5.09 5.55 31.49 0.17 -4.92 16 11 C 0.23 11.00 1.05 -10.65 -0.01 10.99 16 12 O -0.60 -30.61 12.94 -148.98 -1.93 -32.54 16 13 C -0.54 -28.31 8.10 25.60 0.21 -28.11 16 14 H 0.05 2.90 7.53 -2.91 -0.02 2.88 16 15 C 0.03 1.34 5.02 84.66 0.43 1.77 16 16 N -0.92 -48.72 10.82 21.45 0.23 -48.48 16 17 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 C 0.06 2.40 5.77 86.45 0.50 2.90 16 22 S 0.24 4.83 21.72 -56.49 -1.23 3.61 16 23 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 24 H 0.17 2.39 8.06 -2.92 -0.02 2.36 16 25 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.05 1.20 7.88 -2.39 -0.02 1.19 16 27 H 0.04 1.40 7.66 -2.38 -0.02 1.38 16 28 H 0.08 2.59 7.76 -2.39 -0.02 2.57 16 29 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 30 H 0.05 2.31 7.23 -2.39 -0.02 2.29 16 31 H 0.38 19.72 7.33 -74.06 -0.54 19.17 16 32 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 33 H 0.08 3.07 7.67 -2.39 -0.02 3.05 16 34 H 0.04 1.51 7.76 -2.39 -0.02 1.49 16 Total: -1.00 -59.07 304.91 -0.52 -59.58 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.59 Total: 21.12 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 4.29 Total: -13.80 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -4.27 Total: -81.97 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.93 Total: -32.54 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.23 Total: 3.61 kcal Total: -59.07 -0.52 -59.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.327 kcal (2) G-P(sol) polarization free energy of solvation -59.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds