Wall clock time and date at job start Tue Mar 31 2020 00:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.36628 * 125.45849 * 217.77976 * 3 2 1 5 5 C 1.37613 * 113.27044 * 179.71748 * 4 3 2 6 6 C 1.33712 * 115.09291 * 0.48304 * 5 4 3 7 7 C 1.50700 * 124.50820 * 179.79336 * 6 5 4 8 8 N 1.46897 * 109.47366 * 89.72518 * 7 6 5 9 9 C 1.47899 * 111.00068 * 69.87158 * 8 7 6 10 10 C 1.53997 * 107.05889 * 145.84368 * 9 8 7 11 11 C 1.54593 * 105.13807 * 358.77516 * 10 9 8 12 12 O 1.42904 * 110.72258 * 96.40366 * 11 10 9 13 13 C 1.50705 * 110.72583 * 219.68092 * 11 10 9 14 14 H 1.07993 * 119.99953 * 118.54560 * 13 11 10 15 15 C 1.37878 * 119.99835 * 298.55374 * 13 11 10 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99873 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47038 * 59.99320 * 17 15 13 19 19 H 1.48496 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46869 * 299.99940 * 17 15 13 21 21 C 1.48538 * 111.00123 * 187.27000 * 8 7 6 22 22 S 1.70612 * 110.97632 * 359.52537 * 6 5 4 23 23 H 1.08001 * 123.36368 * 359.96664 * 4 3 2 24 24 H 1.07998 * 122.45055 * 180.30060 * 5 4 3 25 25 H 1.09001 * 109.47393 * 329.72424 * 7 6 5 26 26 H 1.09004 * 109.46904 * 209.72164 * 7 6 5 27 27 H 1.09004 * 109.91646 * 26.49394 * 9 8 7 28 28 H 1.08998 * 109.92144 * 265.19786 * 9 8 7 29 29 H 1.09004 * 110.30998 * 117.69119 * 10 9 8 30 30 H 1.08998 * 110.30811 * 239.85930 * 10 9 8 31 31 H 0.96700 * 114.00523 * 61.45046 * 12 11 10 32 32 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 33 33 H 1.09007 * 110.66246 * 318.71191 * 21 8 7 34 34 H 1.08993 * 110.66671 * 81.67342 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3602 0.8806 0.6818 5 6 4.7054 0.6478 0.5087 6 6 5.0045 -0.3790 -0.2939 7 6 6.4059 -0.8173 -0.6333 8 7 6.8609 -1.8083 0.3510 9 6 6.1317 -3.0853 0.1934 10 6 7.1196 -4.2152 0.5381 11 6 8.4508 -3.5012 0.8666 12 8 8.5938 -3.3220 2.2772 13 6 9.6201 -4.2676 0.3038 14 1 10.2627 -3.8082 -0.4325 15 6 9.8692 -5.5553 0.7289 16 7 9.0868 -6.1147 1.6259 17 14 11.3180 -6.5055 0.0308 18 1 12.5777 -5.7785 0.3310 19 1 11.3675 -7.8558 0.6468 20 1 11.1611 -6.6373 -1.4400 21 6 8.2965 -2.1347 0.1532 22 16 3.5885 -1.1313 -0.8767 23 1 2.9697 1.6767 1.2983 24 1 5.4639 1.2520 0.9840 25 1 7.0713 0.0459 -0.6141 26 1 6.4165 -1.2622 -1.6283 27 1 5.7891 -3.1927 -0.8358 28 1 5.2818 -3.1142 0.8754 29 1 6.7668 -4.7751 1.4043 30 1 7.2475 -4.8797 -0.3164 31 1 8.6166 -4.1486 2.7785 32 1 9.2623 -7.0204 1.9253 33 1 8.5273 -2.2265 -0.9082 34 1 8.9302 -1.3805 0.6195 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:20 Heat of formation + Delta-G solvation = 19.355077 kcal Electronic energy + Delta-G solvation = -18743.530570 eV Core-core repulsion = 15768.245393 eV Total energy + Delta-G solvation = -2975.285177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.86743 -37.98250 -36.51353 -34.85550 -32.15411 -31.60781 -29.09446 -28.09294 -26.34129 -24.43048 -23.10251 -21.05116 -20.33019 -19.62314 -18.05648 -17.02818 -16.48663 -15.49287 -15.11159 -14.89252 -14.59553 -14.15361 -13.98531 -13.62854 -13.46859 -13.21841 -12.68556 -12.63913 -12.44297 -12.11003 -11.89709 -11.51443 -11.32033 -11.22903 -11.03908 -10.90190 -10.70823 -10.51677 -10.40567 -9.83832 -9.23533 -8.82590 -8.67199 -8.60619 -8.13709 -7.87630 -6.24258 -4.33074 0.35224 1.07540 1.77020 2.31166 2.77002 3.18255 3.20959 3.26722 3.28970 3.80843 4.25656 4.54107 4.72344 5.03934 5.12089 5.26884 5.37789 5.58525 5.64163 5.83646 5.84528 5.93039 6.08122 6.11257 6.25786 6.37052 6.50828 6.81044 6.97379 7.28209 7.29163 7.44596 7.46255 7.53685 7.77623 8.13008 8.69197 9.36079 9.51342 10.82669 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.003818 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.257545 B = 7332.626038 C = 7514.756940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.289 3.711 3 C -0.188 4.188 4 C -0.051 4.051 5 C -0.140 4.140 6 C -0.164 4.164 7 C 0.107 3.893 8 N -0.506 5.506 9 C 0.033 3.967 10 C -0.129 4.129 11 C 0.258 3.742 12 O -0.579 6.579 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.053 3.947 22 S 0.244 5.756 23 H 0.150 0.850 24 H 0.150 0.850 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.377 0.623 32 H 0.268 0.732 33 H 0.047 0.953 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 9.940 -4.510 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.026 4.026 3 C -0.309 4.309 4 C -0.088 4.088 5 C -0.170 4.170 6 C -0.285 4.285 7 C -0.024 4.024 8 N -0.230 5.230 9 C -0.095 4.095 10 C -0.167 4.167 11 C 0.218 3.782 12 O -0.387 6.387 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.074 4.074 22 S 0.512 5.488 23 H 0.168 0.832 24 H 0.168 0.832 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.320 9.377 -5.051 14.153 hybrid contribution 1.594 -0.351 -0.029 1.632 sum -7.726 9.026 -5.079 12.922 Atomic orbital electron populations 1.81281 1.11264 1.08129 1.09057 1.24356 0.91003 0.93757 0.93484 1.20356 0.89074 1.07455 1.14002 1.20704 0.92326 0.98078 0.97682 1.19882 0.95950 1.00019 1.01142 1.24290 1.00694 1.00366 1.03147 1.20848 0.89168 0.98098 0.94236 1.64865 1.04848 1.08361 1.44967 1.23022 0.98040 0.90392 0.98070 1.22939 0.96285 0.95833 1.01685 1.19300 0.91062 0.88056 0.79811 1.86141 1.96465 1.36402 1.19720 1.21550 1.12953 0.98705 1.24673 0.92154 1.24993 0.96292 0.97261 0.94514 1.69720 1.37793 1.15274 1.30428 0.86548 0.82758 0.78841 0.79215 1.20052 1.21150 1.20193 1.23224 0.86674 0.99185 0.98305 1.83277 0.93033 1.28437 1.44017 0.83202 0.83204 0.88720 0.93605 0.95371 0.91626 0.91363 0.91971 0.77330 0.92258 0.93441 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.90 18.54 41.84 0.78 -5.13 16 2 C 0.29 3.55 15.83 -22.47 -0.36 3.20 16 3 C -0.19 -2.06 6.32 -38.24 -0.24 -2.30 16 4 C -0.05 -0.49 10.24 -40.39 -0.41 -0.91 16 5 C -0.14 -1.47 10.00 -41.40 -0.41 -1.88 16 6 C -0.16 -1.95 5.36 -35.90 -0.19 -2.14 16 7 C 0.11 1.42 5.19 -4.98 -0.03 1.40 16 8 N -0.51 -8.86 5.26 -231.89 -1.22 -10.08 16 9 C 0.03 0.59 5.78 -2.75 -0.02 0.57 16 10 C -0.13 -2.82 5.26 -25.37 -0.13 -2.96 16 11 C 0.26 6.10 0.95 -89.91 -0.09 6.01 16 12 O -0.58 -14.68 13.09 -35.23 -0.46 -15.15 16 13 C -0.54 -13.87 8.14 -34.44 -0.28 -14.15 16 14 H 0.06 1.53 7.78 -52.49 -0.41 1.12 16 15 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 16 N -0.89 -23.20 11.02 55.43 0.61 -22.58 16 17 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.05 1.06 5.67 -1.90 -0.01 1.05 16 22 S 0.24 2.70 22.58 -107.50 -2.43 0.27 16 23 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 24 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 25 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 26 H 0.05 0.59 7.82 -51.93 -0.41 0.18 16 27 H 0.03 0.46 7.57 -51.93 -0.39 0.07 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.60 7.99 -51.93 -0.41 1.18 16 30 H 0.06 1.43 7.84 -51.93 -0.41 1.02 16 31 H 0.38 9.71 7.48 45.56 0.34 10.05 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.05 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -27.41 308.57 -8.70 -36.11 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.35 Total: 7.26 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.26 Total: -10.36 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.17 Total: -37.79 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.46 Total: -15.15 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.43 Total: 0.27 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.41 -8.70 -36.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.467 kcal (2) G-P(sol) polarization free energy of solvation -27.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds