Wall clock time and date at job start Tue Mar 31 2020 00:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.36628 * 125.45849 * 217.77976 * 3 2 1 5 5 C 1.37613 * 113.27044 * 179.71748 * 4 3 2 6 6 C 1.33712 * 115.09291 * 0.48304 * 5 4 3 7 7 C 1.50700 * 124.50820 * 179.79336 * 6 5 4 8 8 N 1.46897 * 109.47366 * 89.72518 * 7 6 5 9 9 C 1.47899 * 111.00068 * 69.87158 * 8 7 6 10 10 C 1.53997 * 107.05889 * 145.84368 * 9 8 7 11 11 C 1.54593 * 105.13807 * 358.77516 * 10 9 8 12 12 O 1.42904 * 110.72258 * 96.40366 * 11 10 9 13 13 C 1.50705 * 110.72583 * 219.68092 * 11 10 9 14 14 H 1.07993 * 119.99953 * 118.54560 * 13 11 10 15 15 C 1.37878 * 119.99835 * 298.55374 * 13 11 10 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99873 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47038 * 59.99320 * 17 15 13 19 19 H 1.48496 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46869 * 299.99940 * 17 15 13 21 21 C 1.48538 * 111.00123 * 187.27000 * 8 7 6 22 22 S 1.70612 * 110.97632 * 359.52537 * 6 5 4 23 23 H 1.08001 * 123.36368 * 359.96664 * 4 3 2 24 24 H 1.07998 * 122.45055 * 180.30060 * 5 4 3 25 25 H 1.09001 * 109.47393 * 329.72424 * 7 6 5 26 26 H 1.09004 * 109.46904 * 209.72164 * 7 6 5 27 27 H 1.09004 * 109.91646 * 26.49394 * 9 8 7 28 28 H 1.08998 * 109.92144 * 265.19786 * 9 8 7 29 29 H 1.09004 * 110.30998 * 117.69119 * 10 9 8 30 30 H 1.08998 * 110.30811 * 239.85930 * 10 9 8 31 31 H 0.96700 * 114.00523 * 61.45046 * 12 11 10 32 32 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 33 33 H 1.09007 * 110.66246 * 318.71191 * 21 8 7 34 34 H 1.08993 * 110.66671 * 81.67342 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3602 0.8806 0.6818 5 6 4.7054 0.6478 0.5087 6 6 5.0045 -0.3790 -0.2939 7 6 6.4059 -0.8173 -0.6333 8 7 6.8609 -1.8083 0.3510 9 6 6.1317 -3.0853 0.1934 10 6 7.1196 -4.2152 0.5381 11 6 8.4508 -3.5012 0.8666 12 8 8.5938 -3.3220 2.2772 13 6 9.6201 -4.2676 0.3038 14 1 10.2627 -3.8082 -0.4325 15 6 9.8692 -5.5553 0.7289 16 7 9.0868 -6.1147 1.6259 17 14 11.3180 -6.5055 0.0308 18 1 12.5777 -5.7785 0.3310 19 1 11.3675 -7.8558 0.6468 20 1 11.1611 -6.6373 -1.4400 21 6 8.2965 -2.1347 0.1532 22 16 3.5885 -1.1313 -0.8767 23 1 2.9697 1.6767 1.2983 24 1 5.4639 1.2520 0.9840 25 1 7.0713 0.0459 -0.6141 26 1 6.4165 -1.2622 -1.6283 27 1 5.7891 -3.1927 -0.8358 28 1 5.2818 -3.1142 0.8754 29 1 6.7668 -4.7751 1.4043 30 1 7.2475 -4.8797 -0.3164 31 1 8.6166 -4.1486 2.7785 32 1 9.2623 -7.0204 1.9253 33 1 8.5273 -2.2265 -0.9082 34 1 8.9302 -1.3805 0.6195 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:19 Heat of formation + Delta-G solvation = 1.290524 kcal Electronic energy + Delta-G solvation = -18744.313908 eV Core-core repulsion = 15768.245393 eV Total energy + Delta-G solvation = -2976.068515 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20873 -39.06974 -37.56728 -36.46591 -34.12626 -32.88375 -30.40637 -29.75015 -27.60775 -26.01456 -24.20846 -22.07824 -21.62201 -21.34840 -19.16529 -18.77033 -17.43670 -16.98202 -16.83676 -16.15235 -16.00224 -15.46836 -15.18255 -14.87459 -14.67431 -14.38055 -14.18110 -13.80459 -13.72240 -13.38679 -13.15740 -13.03981 -12.91419 -12.69793 -12.56885 -12.31357 -12.25507 -12.13557 -11.83458 -11.53912 -11.03578 -10.56738 -10.07423 -9.70458 -9.48616 -9.23718 -8.18071 -6.33701 -0.51529 0.20593 0.91791 1.43613 1.45153 1.46327 1.52252 1.83691 2.27067 2.40818 2.89482 3.06944 3.24782 3.70586 4.00999 4.10929 4.25227 4.29337 4.45445 4.47706 4.62939 4.70848 4.78526 4.90575 5.03717 5.14609 5.24037 5.30666 5.45108 5.51429 5.61667 5.77992 5.91904 6.17385 6.28824 6.34012 6.72856 7.38387 7.51858 8.86844 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.003818 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.257545 B = 7332.626038 C = 7514.756940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.307 3.693 3 C -0.197 4.197 4 C -0.037 4.037 5 C -0.133 4.133 6 C -0.179 4.179 7 C 0.107 3.893 8 N -0.513 5.513 9 C 0.044 3.956 10 C -0.121 4.121 11 C 0.238 3.762 12 O -0.588 6.588 13 C -0.562 4.562 14 H 0.057 0.943 15 C 0.030 3.970 16 N -0.911 5.911 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.062 3.938 22 S 0.244 5.756 23 H 0.177 0.823 24 H 0.166 0.834 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.370 0.630 32 H 0.267 0.733 33 H 0.056 0.944 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 11.217 -5.122 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.007 4.007 3 C -0.317 4.317 4 C -0.074 4.074 5 C -0.164 4.164 6 C -0.300 4.300 7 C -0.022 4.022 8 N -0.237 5.237 9 C -0.084 4.084 10 C -0.160 4.160 11 C 0.198 3.802 12 O -0.396 6.396 13 C -0.600 4.600 14 H 0.076 0.924 15 C -0.171 4.171 16 N -0.550 5.550 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.065 4.065 22 S 0.512 5.488 23 H 0.195 0.805 24 H 0.183 0.817 25 H 0.130 0.870 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.335 10.663 -5.680 15.268 hybrid contribution 1.602 -0.709 0.180 1.761 sum -7.732 9.954 -5.501 13.753 Atomic orbital electron populations 1.81300 1.12319 1.09403 1.10392 1.24469 0.91112 0.92706 0.92437 1.20403 0.88383 1.08165 1.14782 1.20991 0.91748 0.97896 0.96768 1.20124 0.96646 0.99445 1.00174 1.24212 1.00078 1.01332 1.04408 1.20899 0.90366 0.97480 0.93503 1.64789 1.03299 1.08507 1.47093 1.22866 0.96953 0.89323 0.99232 1.22729 0.96806 0.96623 0.99871 1.19605 0.91144 0.90460 0.79015 1.86134 1.96589 1.36036 1.20817 1.21880 1.13860 0.99358 1.24913 0.92446 1.25672 0.98449 0.98089 0.94857 1.69819 1.38811 1.15350 1.31063 0.85646 0.79901 0.77522 0.78733 1.20000 1.20987 1.19623 1.23033 0.88427 0.96958 0.98094 1.83291 0.92873 1.28515 1.44096 0.80539 0.81690 0.86980 0.92764 0.93474 0.91151 0.93702 0.93726 0.78153 0.92339 0.92632 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.39 18.54 19.00 0.35 -12.04 16 2 C 0.31 7.07 15.83 88.33 1.40 8.46 16 3 C -0.20 -3.83 6.32 23.14 0.15 -3.69 16 4 C -0.04 -0.59 10.24 21.75 0.22 -0.37 16 5 C -0.13 -2.35 10.00 21.09 0.21 -2.14 16 6 C -0.18 -3.75 5.36 24.66 0.13 -3.62 16 7 C 0.11 2.55 5.19 85.56 0.44 3.00 16 8 N -0.51 -16.97 5.26 -887.57 -4.66 -21.64 16 9 C 0.04 1.54 5.78 86.45 0.50 2.04 16 10 C -0.12 -5.37 5.26 31.47 0.17 -5.21 16 11 C 0.24 11.27 0.95 -10.34 -0.01 11.26 16 12 O -0.59 -30.20 13.09 -148.98 -1.95 -32.15 16 13 C -0.56 -28.98 8.14 25.60 0.21 -28.78 16 14 H 0.06 2.91 7.78 -2.91 -0.02 2.89 16 15 C 0.03 1.55 5.28 84.65 0.45 1.99 16 16 N -0.91 -47.99 11.02 21.45 0.24 -47.76 16 17 Si 0.96 41.02 29.54 68.60 2.03 43.04 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 21 C 0.06 2.41 5.67 86.65 0.49 2.90 16 22 S 0.24 4.87 22.58 -56.49 -1.28 3.59 16 23 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 24 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.11 2.30 8.11 -2.39 -0.02 2.28 16 26 H 0.05 1.23 7.82 -2.38 -0.02 1.21 16 27 H 0.05 1.45 7.57 -2.39 -0.02 1.44 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 2.15 7.99 -2.39 -0.02 2.13 16 30 H 0.04 2.07 7.84 -2.39 -0.02 2.06 16 31 H 0.37 19.58 7.48 -74.06 -0.55 19.03 16 32 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.06 2.03 7.92 -2.38 -0.02 2.01 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -58.40 308.57 -0.34 -58.74 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.58 Total: 22.36 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.36 Total: -14.15 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -4.08 Total: -81.44 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.95 Total: -32.15 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.28 Total: 3.59 kcal Total: -58.40 -0.34 -58.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.033 kcal (2) G-P(sol) polarization free energy of solvation -58.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds