Wall clock time and date at job start Tue Mar 31 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47302 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99868 * 3 2 1 6 6 H 1.48499 * 109.47216 * 149.99957 * 3 2 1 7 7 C 1.37878 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00301 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99444 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46603 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00254 * 293.95474 * 10 9 7 12 12 C 1.50704 * 109.46875 * 297.77689 * 11 10 9 13 13 C 1.34510 * 125.79341 * 93.46208 * 12 11 10 14 14 C 1.41378 * 106.84216 * 180.02562 * 13 12 11 15 15 C 1.34508 * 106.84417 * 359.97438 * 14 13 12 16 16 O 1.34305 * 125.78715 * 273.48431 * 12 11 10 17 17 C 1.46901 * 110.99969 * 169.99953 * 10 9 7 18 18 C 1.50695 * 109.47507 * 199.16109 * 17 10 9 19 19 C 1.35136 * 127.24777 * 84.64644 * 18 17 10 20 20 C 1.37808 * 114.76185 * 179.86697 * 19 18 17 21 21 N 1.30080 * 116.87873 * 0.45632 * 20 19 18 22 22 S 1.69605 * 107.15281 * 359.75214 * 21 20 19 23 23 H 0.97003 * 120.00399 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47273 * 60.00653 * 9 7 2 25 25 H 1.08999 * 109.47435 * 299.99535 * 9 7 2 26 26 H 1.08996 * 109.47169 * 177.77280 * 11 10 9 27 27 H 1.09002 * 109.47044 * 57.76982 * 11 10 9 28 28 H 1.08003 * 126.57476 * 0.05015 * 13 12 11 29 29 H 1.08000 * 126.57689 * 179.97438 * 14 13 12 30 30 H 1.07993 * 125.79389 * 180.26494 * 15 14 13 31 31 H 1.09004 * 109.47030 * 319.16657 * 17 10 9 32 32 H 1.09004 * 109.46487 * 79.16075 * 17 10 9 33 33 H 1.08006 * 122.61747 * 0.04832 * 19 18 17 34 34 H 1.07999 * 121.56457 * 180.20820 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.6522 -3.2607 1.2526 12 6 4.3194 -2.5600 2.4080 13 6 3.7715 -1.5907 3.1627 14 6 4.7409 -1.2225 4.1237 15 6 5.8230 -1.9892 3.8993 16 8 5.5622 -2.7972 2.8586 17 6 5.4499 -2.6252 -0.2397 18 6 5.8400 -4.0072 -0.6967 19 6 5.7975 -4.4945 -1.9564 20 6 6.2189 -5.8003 -2.0847 21 7 6.5939 -6.4068 -0.9968 22 16 6.4260 -5.2992 0.2766 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 3.9917 -4.2956 1.2101 27 1 2.5710 -3.2383 1.3896 28 1 2.7809 -1.1739 3.0553 29 1 4.6331 -0.4700 4.8909 30 1 6.7439 -1.9626 4.4628 31 1 5.7147 -1.8998 -1.0090 32 1 5.9780 -2.3851 0.6832 33 1 5.4623 -3.9056 -2.7975 34 1 6.2332 -6.2981 -3.0430 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602431302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:14 Heat of formation + Delta-G solvation = 69.576855 kcal Electronic energy + Delta-G solvation = -19398.538479 eV Core-core repulsion = 16425.431082 eV Total energy + Delta-G solvation = -2973.107397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.20905 -38.70324 -37.12619 -32.88870 -32.54299 -31.64839 -29.85125 -28.09804 -26.47849 -24.73856 -22.94146 -21.31849 -21.03299 -19.95731 -19.32163 -17.70815 -16.97570 -16.63364 -16.05668 -15.52290 -15.07503 -14.52495 -14.21379 -13.97889 -13.62571 -13.15429 -12.95084 -12.53620 -12.45143 -12.39794 -12.16260 -11.93686 -11.63374 -11.10825 -10.94220 -10.65335 -10.49957 -10.27151 -10.04094 -9.52882 -9.40298 -9.31846 -8.65691 -8.55077 -8.09401 -7.76100 -6.13576 -4.11976 0.87492 1.67726 2.05640 2.10017 2.65995 3.05174 3.22165 3.30690 3.32753 3.38982 4.34416 4.59981 4.79981 5.07608 5.18704 5.26349 5.39503 5.40580 5.45704 5.51334 5.76978 5.84028 6.04759 6.09388 6.21339 6.29185 6.44195 6.50606 6.66668 6.74074 6.84063 6.94793 7.37153 7.51534 7.66451 7.76371 8.51215 8.93234 9.47203 10.98951 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.006753 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.674880 B = 4145.071411 C = 5284.971235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.155 3.845 10 N -0.504 5.504 11 C 0.137 3.863 12 C -0.040 4.040 13 C -0.187 4.187 14 C -0.215 4.215 15 C -0.060 4.060 16 O -0.180 6.180 17 C 0.113 3.887 18 C -0.136 4.136 19 C -0.200 4.200 20 C 0.090 3.910 21 N -0.475 5.475 22 S 0.245 5.755 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.194 0.806 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.157 0.843 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.892 -5.607 2.374 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.695 3.305 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.100 0.900 9 C 0.029 3.971 10 N -0.226 5.226 11 C 0.008 3.992 12 C -0.092 4.092 13 C -0.207 4.207 14 C -0.234 4.234 15 C -0.128 4.128 16 O -0.076 6.076 17 C -0.017 4.017 18 C -0.267 4.267 19 C -0.235 4.235 20 C -0.107 4.107 21 N -0.296 5.296 22 S 0.396 5.604 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.211 0.789 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.175 0.825 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 13.384 -7.264 3.459 15.616 hybrid contribution 0.055 2.709 -0.787 2.822 sum 13.439 -4.554 2.672 14.439 Atomic orbital electron populations 1.69876 1.06072 1.26933 1.50579 1.24824 0.94641 0.98636 0.94727 0.86969 0.80546 0.84312 0.78682 1.20156 1.21136 1.19044 1.20919 0.88217 0.94773 1.50932 0.89987 1.20379 0.97491 0.83140 0.96098 1.62354 1.09109 1.20489 1.30634 1.21064 1.00856 0.95878 0.81381 1.23799 0.83330 1.01751 1.00285 1.21849 1.02106 0.99825 0.96948 1.21854 0.94720 1.03806 1.03005 1.23878 1.01002 0.95573 0.92383 1.84058 1.31363 1.52342 1.39836 1.20651 0.90951 0.89321 1.00811 1.25491 1.01487 1.02102 0.97594 1.21317 1.07206 0.96297 0.98657 1.22806 0.96601 0.92999 0.98314 1.76732 1.25454 1.25276 1.02105 1.84148 1.59066 0.99553 1.17586 0.92554 0.97635 0.95583 0.90864 0.86080 0.82763 0.84071 0.78888 0.88950 0.92656 0.82520 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.51 -13.39 9.04 -34.44 -0.31 -13.70 16 8 H 0.08 2.35 7.36 -52.49 -0.39 1.96 16 9 C 0.15 3.45 3.54 -4.97 -0.02 3.43 16 10 N -0.50 -9.71 4.62 -238.95 -1.11 -10.82 16 11 C 0.14 2.50 5.59 -4.97 -0.03 2.47 16 12 C -0.04 -0.72 4.96 -35.62 -0.18 -0.89 16 13 C -0.19 -3.42 9.43 -39.71 -0.37 -3.80 16 14 C -0.21 -3.31 10.91 -39.71 -0.43 -3.75 16 15 C -0.06 -0.85 12.09 29.41 0.36 -0.49 16 16 O -0.18 -2.91 9.40 5.69 0.05 -2.86 16 17 C 0.11 1.84 5.44 -4.98 -0.03 1.82 16 18 C -0.14 -2.03 5.53 -35.41 -0.20 -2.22 16 19 C -0.20 -2.68 10.17 -40.84 -0.42 -3.10 16 20 C 0.09 1.14 11.27 -18.45 -0.21 0.93 16 21 N -0.48 -6.96 12.09 28.86 0.35 -6.61 16 22 S 0.25 3.55 22.93 -107.50 -2.46 1.08 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.01 0.14 5.05 -51.93 -0.26 -0.13 16 25 H 0.03 0.59 7.26 -51.93 -0.38 0.21 16 26 H 0.07 1.23 6.85 -51.93 -0.36 0.88 16 27 H 0.12 2.40 6.80 -51.93 -0.35 2.04 16 28 H 0.15 3.05 8.06 -52.48 -0.42 2.63 16 29 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.09 1.43 7.75 -51.93 -0.40 1.03 16 32 H 0.06 0.92 5.78 -51.93 -0.30 0.62 16 33 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -29.85 300.10 -8.19 -38.04 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.72 Total: 3.54 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.93 Total: -17.37 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.02 Total: -42.82 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.05 Total: -2.86 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -2.46 Total: 1.08 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.85 -8.19 -38.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.615 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds