Wall clock time and date at job start Tue Mar 31 2020 00:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47302 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99868 * 3 2 1 6 6 H 1.48499 * 109.47216 * 149.99957 * 3 2 1 7 7 C 1.37878 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00301 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99444 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46603 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00254 * 293.95474 * 10 9 7 12 12 C 1.50704 * 109.46875 * 297.77689 * 11 10 9 13 13 C 1.34510 * 125.79341 * 93.46208 * 12 11 10 14 14 C 1.41378 * 106.84216 * 180.02562 * 13 12 11 15 15 C 1.34508 * 106.84417 * 359.97438 * 14 13 12 16 16 O 1.34305 * 125.78715 * 273.48431 * 12 11 10 17 17 C 1.46901 * 110.99969 * 169.99953 * 10 9 7 18 18 C 1.50695 * 109.47507 * 199.16109 * 17 10 9 19 19 C 1.35136 * 127.24777 * 84.64644 * 18 17 10 20 20 C 1.37808 * 114.76185 * 179.86697 * 19 18 17 21 21 N 1.30080 * 116.87873 * 0.45632 * 20 19 18 22 22 S 1.69605 * 107.15281 * 359.75214 * 21 20 19 23 23 H 0.97003 * 120.00399 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47273 * 60.00653 * 9 7 2 25 25 H 1.08999 * 109.47435 * 299.99535 * 9 7 2 26 26 H 1.08996 * 109.47169 * 177.77280 * 11 10 9 27 27 H 1.09002 * 109.47044 * 57.76982 * 11 10 9 28 28 H 1.08003 * 126.57476 * 0.05015 * 13 12 11 29 29 H 1.08000 * 126.57689 * 179.97438 * 14 13 12 30 30 H 1.07993 * 125.79389 * 180.26494 * 15 14 13 31 31 H 1.09004 * 109.47030 * 319.16657 * 17 10 9 32 32 H 1.09004 * 109.46487 * 79.16075 * 17 10 9 33 33 H 1.08006 * 122.61747 * 0.04832 * 19 18 17 34 34 H 1.07999 * 121.56457 * 180.20820 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.6522 -3.2607 1.2526 12 6 4.3194 -2.5600 2.4080 13 6 3.7715 -1.5907 3.1627 14 6 4.7409 -1.2225 4.1237 15 6 5.8230 -1.9892 3.8993 16 8 5.5622 -2.7972 2.8586 17 6 5.4499 -2.6252 -0.2397 18 6 5.8400 -4.0072 -0.6967 19 6 5.7975 -4.4945 -1.9564 20 6 6.2189 -5.8003 -2.0847 21 7 6.5939 -6.4068 -0.9968 22 16 6.4260 -5.2992 0.2766 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 3.9917 -4.2956 1.2101 27 1 2.5710 -3.2383 1.3896 28 1 2.7809 -1.1739 3.0553 29 1 4.6331 -0.4700 4.8909 30 1 6.7439 -1.9626 4.4628 31 1 5.7147 -1.8998 -1.0090 32 1 5.9780 -2.3851 0.6832 33 1 5.4623 -3.9056 -2.7975 34 1 6.2332 -6.2981 -3.0430 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602431302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:13 Heat of formation + Delta-G solvation = 50.142002 kcal Electronic energy + Delta-G solvation = -19399.381238 eV Core-core repulsion = 16425.431082 eV Total energy + Delta-G solvation = -2973.950156 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.48876 -39.83182 -38.56465 -34.77160 -33.93333 -32.92695 -31.33155 -29.70702 -27.79515 -26.19450 -24.30410 -22.65254 -22.54619 -21.25742 -20.51067 -19.17337 -18.53573 -18.00895 -17.40946 -16.82817 -16.46141 -16.13234 -15.68557 -15.41977 -14.83694 -14.57263 -14.28985 -14.15700 -13.78584 -13.68458 -13.53213 -13.29449 -13.18862 -12.77159 -12.54556 -12.29561 -11.96518 -11.80367 -11.49821 -11.35335 -10.80522 -10.71880 -10.48572 -9.63207 -9.44424 -9.25041 -8.25364 -6.27521 -0.22381 0.57563 0.83805 0.99768 1.34671 1.37249 1.46096 1.63456 1.75452 2.14382 2.35195 3.08218 3.18768 3.62798 3.81999 4.11759 4.14938 4.20816 4.32624 4.39304 4.45394 4.57722 4.73689 4.86959 4.95815 5.02577 5.06072 5.08132 5.11848 5.28067 5.51042 5.63440 5.71367 5.86254 6.09258 6.27440 6.54041 6.78025 7.35149 8.90671 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.006753 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.674880 B = 4145.071411 C = 5284.971235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.505 4.505 8 H 0.043 0.957 9 C 0.167 3.833 10 N -0.514 5.514 11 C 0.143 3.857 12 C -0.051 4.051 13 C -0.209 4.209 14 C -0.230 4.230 15 C -0.038 4.038 16 O -0.181 6.181 17 C 0.118 3.882 18 C -0.153 4.153 19 C -0.194 4.194 20 C 0.098 3.902 21 N -0.493 5.493 22 S 0.234 5.766 23 H 0.265 0.735 24 H 0.003 0.997 25 H 0.032 0.968 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.164 0.836 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.173 0.827 34 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.751 -5.363 2.221 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.041 3.959 10 N -0.236 5.236 11 C 0.015 3.985 12 C -0.103 4.103 13 C -0.230 4.230 14 C -0.249 4.249 15 C -0.105 4.105 16 O -0.077 6.077 17 C -0.011 4.011 18 C -0.284 4.284 19 C -0.229 4.229 20 C -0.099 4.099 21 N -0.314 5.314 22 S 0.386 5.614 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.050 0.950 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.181 0.819 30 H 0.260 0.740 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.190 0.810 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 16.268 -7.041 3.314 18.033 hybrid contribution -0.830 2.506 -0.732 2.739 sum 15.438 -4.536 2.583 16.296 Atomic orbital electron populations 1.70027 1.07956 1.27876 1.52698 1.25634 0.95327 1.02425 0.94602 0.85923 0.79564 0.79619 0.79168 1.19087 1.21216 1.17600 1.21105 0.90475 0.93241 1.49521 0.93838 1.20082 0.94674 0.85189 0.95971 1.62230 1.11526 1.18503 1.31331 1.20807 0.99395 0.96608 0.81724 1.23448 0.84256 1.02046 1.00527 1.21836 1.01839 1.00622 0.98697 1.22106 0.94393 1.05156 1.03254 1.24799 1.01897 0.93141 0.90661 1.84063 1.30249 1.52803 1.40577 1.20585 0.88643 0.90709 1.01171 1.25367 1.02958 1.01630 0.98436 1.21614 1.05975 0.96748 0.98557 1.23329 0.94771 0.92617 0.99206 1.76785 1.26345 1.25545 1.02681 1.84112 1.59589 0.99624 1.18071 0.92565 0.97910 0.94957 0.89582 0.88937 0.85467 0.81886 0.74038 0.87972 0.92666 0.80984 0.76657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.96 21.45 0.30 -56.82 16 2 C 0.02 1.00 5.47 84.66 0.46 1.46 16 3 Si 0.93 42.50 27.47 68.60 1.88 44.39 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.51 -27.38 9.04 25.60 0.23 -27.15 16 8 H 0.04 2.64 7.36 -2.91 -0.02 2.62 16 9 C 0.17 7.47 3.54 85.56 0.30 7.77 16 10 N -0.51 -19.77 4.62 -909.90 -4.21 -23.98 16 11 C 0.14 5.36 5.59 85.56 0.48 5.84 16 12 C -0.05 -1.82 4.96 24.83 0.12 -1.70 16 13 C -0.21 -7.73 9.43 22.19 0.21 -7.52 16 14 C -0.23 -6.66 10.91 22.19 0.24 -6.42 16 15 C -0.04 -0.93 12.09 66.97 0.81 -0.12 16 16 O -0.18 -5.50 9.40 -2.54 -0.02 -5.53 16 17 C 0.12 3.70 5.44 85.56 0.47 4.17 16 18 C -0.15 -4.31 5.53 24.97 0.14 -4.17 16 19 C -0.19 -4.71 10.17 21.45 0.22 -4.49 16 20 C 0.10 2.19 11.27 84.85 0.96 3.14 16 21 N -0.49 -13.42 12.09 -62.60 -0.76 -14.18 16 22 S 0.23 6.44 22.93 -56.49 -1.30 5.15 16 23 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 0.15 5.05 -2.39 -0.01 0.13 16 25 H 0.03 1.41 7.26 -2.39 -0.02 1.39 16 26 H 0.09 2.94 6.85 -2.39 -0.02 2.92 16 27 H 0.09 3.94 6.80 -2.39 -0.02 3.92 16 28 H 0.13 5.33 8.06 -2.91 -0.02 5.30 16 29 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 30 H 0.24 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.10 2.95 7.75 -2.39 -0.02 2.93 16 32 H 0.06 1.73 5.78 -2.38 -0.01 1.72 16 33 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -66.11 300.10 1.60 -64.51 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.06 Total: 15.65 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.64 Total: -29.20 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.67 Total: -94.97 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.02 Total: -5.53 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.39 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.30 Total: 5.15 kcal Total: -66.11 1.60 -64.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.653 kcal (2) G-P(sol) polarization free energy of solvation -66.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds