Wall clock time and date at job start Tue Mar 31 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33716 * 125.00481 * 2 1 4 4 C 1.37726 * 115.20295 * 180.02562 * 3 2 1 5 5 C 1.36332 * 114.41366 * 359.97438 * 4 3 2 6 6 C 1.46647 * 125.34550 * 179.97438 * 5 4 3 7 7 N 1.29527 * 119.43295 * 359.72888 * 6 5 4 8 8 N 1.39742 * 121.52881 * 181.03209 * 7 6 5 9 9 C 1.46499 * 119.78514 * 195.46562 * 8 7 6 10 10 C 1.50693 * 109.47475 * 270.20512 * 9 8 7 11 11 H 1.07998 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00170 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00018 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00037 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47156 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46701 * 120.00433 * 14 12 10 17 17 H 1.48494 * 109.47324 * 240.00370 * 14 12 10 18 18 C 1.34656 * 120.48261 * 15.67889 * 8 7 6 19 19 O 1.21324 * 120.17441 * 184.04301 * 18 8 7 20 20 C 1.50853 * 119.65049 * 4.01913 * 18 8 7 21 21 C 1.50578 * 119.43830 * 179.97438 * 6 5 4 22 22 S 1.75819 * 125.00785 * 179.69265 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00268 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00368 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00349 * 1 2 3 26 26 H 1.07997 * 122.39640 * 0.02562 * 3 2 1 27 27 H 1.08001 * 122.79486 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47209 * 30.20836 * 9 8 7 29 29 H 1.09009 * 109.47075 * 150.20597 * 9 8 7 30 30 H 0.96999 * 120.00003 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.52665 * 204.48266 * 20 18 8 32 32 H 1.09003 * 109.57295 * 84.33448 * 20 18 8 33 33 H 1.08993 * 109.43712 * 266.71054 * 21 6 5 34 34 H 1.08996 * 109.43377 * 26.57943 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0953 0.0000 4 6 3.6312 0.8608 -0.0006 5 6 3.9752 -0.4584 -0.0005 6 6 5.3467 -0.9776 -0.0015 7 7 6.3413 -0.1479 -0.0080 8 7 7.6653 -0.5945 -0.0307 9 6 8.7512 0.3310 0.3015 10 6 9.2221 1.0236 -0.9513 11 1 8.7585 0.7973 -1.9001 12 6 10.2440 1.9468 -0.8861 13 7 10.8083 2.2227 0.2694 14 14 10.8272 2.8058 -2.4391 15 1 10.0354 2.3231 -3.5988 16 1 10.6449 4.2722 -2.2917 17 1 12.2644 2.5055 -2.6610 18 6 7.9509 -1.8685 -0.3600 19 8 9.0944 -2.2703 -0.3071 20 6 6.8414 -2.7937 -0.7944 21 6 5.5746 -2.4660 -0.0007 22 16 2.5157 -1.4401 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8591 2.0923 0.0004 27 1 4.3622 1.6558 -0.0010 28 1 8.3908 1.0735 1.0135 29 1 9.5792 -0.2238 0.7430 30 1 11.5275 2.8720 0.3152 31 1 7.1331 -3.8267 -0.6045 32 1 6.6497 -2.6593 -1.8590 33 1 5.6888 -2.8149 1.0256 34 1 4.7203 -2.9639 -0.4594 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603923625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:33 Heat of formation + Delta-G solvation = 29.820628 kcal Electronic energy + Delta-G solvation = -18655.855800 eV Core-core repulsion = 15681.024443 eV Total energy + Delta-G solvation = -2974.831357 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.92419 -38.00514 -36.57213 -34.24370 -32.51949 -32.12640 -30.52871 -28.09991 -26.27389 -24.94740 -23.27026 -22.63823 -21.72580 -19.34131 -17.52893 -16.76126 -16.57519 -16.41691 -15.88964 -15.19157 -15.01279 -14.26505 -14.14488 -13.78926 -13.47509 -13.19537 -13.06748 -12.68911 -12.46831 -12.25131 -12.07073 -11.76133 -11.75017 -11.45090 -11.16413 -10.85639 -10.78831 -10.71667 -10.34920 -10.08107 -9.70137 -8.95088 -8.72385 -8.50171 -8.47646 -7.49014 -6.08550 -4.12969 0.56677 1.42574 1.86800 2.11452 2.88340 3.14651 3.29708 3.36095 3.40608 3.44800 4.23515 4.42298 4.64389 4.71300 4.77138 5.06290 5.13427 5.23931 5.27764 5.29033 5.41169 5.55361 5.63550 5.68966 5.80611 5.87826 6.08651 6.35721 6.47299 6.57717 7.07693 7.26553 7.36731 7.86379 8.12107 8.43107 8.78696 8.92311 9.50734 11.00075 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.004679 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.372199 B = 5982.141738 C = 6922.333462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.187 4.187 3 C -0.136 4.136 4 C -0.096 4.096 5 C -0.132 4.132 6 C 0.123 3.877 7 N -0.202 5.202 8 N -0.429 5.429 9 C 0.261 3.739 10 C -0.525 4.525 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.903 3.097 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.486 3.514 19 O -0.517 6.517 20 C -0.144 4.144 21 C -0.108 4.108 22 S 0.128 5.872 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.153 0.847 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.264 0.736 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.311 -6.969 0.143 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.305 4.305 3 C -0.165 4.165 4 C -0.130 4.130 5 C -0.251 4.251 6 C -0.067 4.067 7 N -0.011 5.011 8 N -0.248 5.248 9 C 0.144 3.856 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.730 3.270 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.272 3.728 19 O -0.390 6.390 20 C -0.184 4.184 21 C -0.148 4.148 22 S 0.391 5.609 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.158 0.842 27 H 0.170 0.830 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.326 -7.768 0.280 21.761 hybrid contribution 0.660 1.297 -0.929 1.727 sum -19.665 -6.471 -0.648 20.712 Atomic orbital electron populations 1.20325 0.87859 1.03066 1.02669 1.24629 0.99878 0.95868 1.10151 1.19986 0.92835 0.99272 1.04450 1.20813 0.96145 0.95889 1.00156 1.22365 0.93650 0.96269 1.12793 1.21774 0.90395 0.92161 1.02363 1.74323 0.89909 1.28155 1.08666 1.49572 1.01934 1.10521 1.62804 1.19514 0.81534 0.87295 0.97277 1.21362 1.18254 1.22920 0.93892 0.92271 1.24908 0.95913 0.96523 0.96624 1.69937 1.25160 1.34100 1.24104 0.86365 0.78574 0.79140 0.82909 1.19786 1.20769 1.20794 1.20979 0.90406 0.83095 0.78311 1.90721 1.22080 1.74944 1.51246 1.21823 0.93457 1.00968 1.02174 1.20972 0.98558 0.92926 1.02372 1.83873 0.95178 1.08684 1.73156 0.90788 0.90533 0.91415 0.84157 0.82985 0.93655 0.92543 0.92595 0.87403 0.88228 0.89009 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.37 36.01 0.37 -0.16 16 2 C -0.19 -1.83 6.50 -35.89 -0.23 -2.06 16 3 C -0.14 -1.49 10.01 -41.35 -0.41 -1.90 16 4 C -0.10 -1.31 9.88 -40.45 -0.40 -1.71 16 5 C -0.13 -1.83 6.40 -36.88 -0.24 -2.07 16 6 C 0.12 1.99 6.79 -80.23 -0.54 1.45 16 7 N -0.20 -4.14 10.93 34.87 0.38 -3.76 16 8 N -0.43 -10.07 3.46 -61.44 -0.21 -10.29 16 9 C 0.26 7.18 5.48 -5.20 -0.03 7.16 16 10 C -0.53 -15.44 9.38 -34.44 -0.32 -15.77 16 11 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 C 0.49 10.63 7.53 -10.96 -0.08 10.55 16 19 O -0.52 -13.21 16.65 5.52 0.09 -13.12 16 20 C -0.14 -2.19 6.22 -27.79 -0.17 -2.36 16 21 C -0.11 -1.42 5.82 -27.92 -0.16 -1.58 16 22 S 0.13 1.33 22.11 -107.50 -2.38 -1.05 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 27 H 0.15 2.24 7.98 -52.49 -0.42 1.82 16 28 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.68 7.35 -51.92 -0.38 1.30 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 0.91 7.19 -51.93 -0.37 0.54 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -33.71 310.83 -8.14 -41.85 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.10 Total: -2.73 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.32 Total: -6.73 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.90 Total: -40.15 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.38 Total: -1.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.71 -8.14 -41.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603923625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.670 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds