Wall clock time and date at job start Tue Mar 31 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33716 * 125.00481 * 2 1 4 4 C 1.37726 * 115.20295 * 180.02562 * 3 2 1 5 5 C 1.36332 * 114.41366 * 359.97438 * 4 3 2 6 6 C 1.46647 * 125.34550 * 179.97438 * 5 4 3 7 7 N 1.29527 * 119.43295 * 359.72888 * 6 5 4 8 8 N 1.39742 * 121.52881 * 181.03209 * 7 6 5 9 9 C 1.46499 * 119.78514 * 195.46562 * 8 7 6 10 10 C 1.50693 * 109.47475 * 270.20512 * 9 8 7 11 11 H 1.07998 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00170 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00018 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00037 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47156 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46701 * 120.00433 * 14 12 10 17 17 H 1.48494 * 109.47324 * 240.00370 * 14 12 10 18 18 C 1.34656 * 120.48261 * 15.67889 * 8 7 6 19 19 O 1.21324 * 120.17441 * 184.04301 * 18 8 7 20 20 C 1.50853 * 119.65049 * 4.01913 * 18 8 7 21 21 C 1.50578 * 119.43830 * 179.97438 * 6 5 4 22 22 S 1.75819 * 125.00785 * 179.69265 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00268 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00368 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00349 * 1 2 3 26 26 H 1.07997 * 122.39640 * 0.02562 * 3 2 1 27 27 H 1.08001 * 122.79486 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47209 * 30.20836 * 9 8 7 29 29 H 1.09009 * 109.47075 * 150.20597 * 9 8 7 30 30 H 0.96999 * 120.00003 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.52665 * 204.48266 * 20 18 8 32 32 H 1.09003 * 109.57295 * 84.33448 * 20 18 8 33 33 H 1.08993 * 109.43712 * 266.71054 * 21 6 5 34 34 H 1.08996 * 109.43377 * 26.57943 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0953 0.0000 4 6 3.6312 0.8608 -0.0006 5 6 3.9752 -0.4584 -0.0005 6 6 5.3467 -0.9776 -0.0015 7 7 6.3413 -0.1479 -0.0080 8 7 7.6653 -0.5945 -0.0307 9 6 8.7512 0.3310 0.3015 10 6 9.2221 1.0236 -0.9513 11 1 8.7585 0.7973 -1.9001 12 6 10.2440 1.9468 -0.8861 13 7 10.8083 2.2227 0.2694 14 14 10.8272 2.8058 -2.4391 15 1 10.0354 2.3231 -3.5988 16 1 10.6449 4.2722 -2.2917 17 1 12.2644 2.5055 -2.6610 18 6 7.9509 -1.8685 -0.3600 19 8 9.0944 -2.2703 -0.3071 20 6 6.8414 -2.7937 -0.7944 21 6 5.5746 -2.4660 -0.0007 22 16 2.5157 -1.4401 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8591 2.0923 0.0004 27 1 4.3622 1.6558 -0.0010 28 1 8.3908 1.0735 1.0135 29 1 9.5792 -0.2238 0.7430 30 1 11.5275 2.8720 0.3152 31 1 7.1331 -3.8267 -0.6045 32 1 6.6497 -2.6593 -1.8590 33 1 5.6888 -2.8149 1.0256 34 1 4.7203 -2.9639 -0.4594 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603923625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:32 Heat of formation + Delta-G solvation = 7.731165 kcal Electronic energy + Delta-G solvation = -18656.813671 eV Core-core repulsion = 15681.024443 eV Total energy + Delta-G solvation = -2975.789228 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48443 -39.11678 -37.98127 -36.03204 -34.41772 -33.20502 -31.79943 -29.83000 -27.63528 -26.32438 -24.76776 -23.95870 -23.14324 -20.41399 -18.97562 -18.80833 -17.93399 -17.77436 -17.24322 -16.81810 -16.39587 -15.86910 -15.39719 -14.94862 -14.58787 -14.50187 -14.34818 -13.88826 -13.74121 -13.63690 -13.37604 -13.23906 -13.01817 -12.79662 -12.72333 -12.50421 -12.37618 -12.32543 -11.71665 -11.68126 -11.62135 -10.73038 -10.53246 -10.04390 -9.35679 -8.94405 -8.30702 -6.46861 -0.48484 0.48625 0.89157 0.96783 1.32138 1.34813 1.46087 1.59210 1.65403 2.06217 2.33895 2.93148 3.01591 3.39744 3.57323 3.99087 4.04124 4.07682 4.40266 4.46136 4.55069 4.58581 4.75426 4.85175 4.85730 4.88908 4.95950 5.17021 5.22277 5.25959 5.39688 5.46243 5.59339 5.63428 5.89502 6.56358 6.77720 7.20955 7.31417 8.77234 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.004679 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.372199 B = 5982.141738 C = 6922.333462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.165 4.165 3 C -0.158 4.158 4 C -0.094 4.094 5 C -0.185 4.185 6 C 0.160 3.840 7 N -0.267 5.267 8 N -0.446 5.446 9 C 0.280 3.720 10 C -0.546 4.546 11 H 0.048 0.952 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.976 3.024 15 H -0.270 1.270 16 H -0.266 1.266 17 H -0.273 1.273 18 C 0.469 3.531 19 O -0.574 6.574 20 C -0.129 4.129 21 C -0.107 4.107 22 S 0.191 5.809 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.159 0.841 27 H 0.127 0.873 28 H 0.022 0.978 29 H 0.019 0.981 30 H 0.271 0.729 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.207 -8.024 -1.062 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.284 4.284 3 C -0.187 4.187 4 C -0.130 4.130 5 C -0.304 4.304 6 C -0.030 4.030 7 N -0.075 5.075 8 N -0.264 5.264 9 C 0.160 3.840 10 C -0.585 4.585 11 H 0.066 0.934 12 C -0.189 4.189 13 N -0.565 5.565 14 Si 0.799 3.201 15 H -0.195 1.195 16 H -0.191 1.191 17 H -0.198 1.198 18 C 0.258 3.742 19 O -0.452 6.452 20 C -0.169 4.169 21 C -0.147 4.147 22 S 0.456 5.544 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.177 0.823 27 H 0.145 0.855 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.274 -8.830 -0.917 25.846 hybrid contribution 1.503 1.607 -0.476 2.251 sum -22.771 -7.223 -1.393 23.930 Atomic orbital electron populations 1.20536 0.85026 1.04626 1.04138 1.25240 1.01699 0.95340 1.06158 1.20091 0.91586 1.00906 1.06075 1.20909 0.97255 0.95597 0.99210 1.22495 0.93995 0.97574 1.16302 1.22544 0.90478 0.93814 0.96153 1.74394 0.88892 1.29470 1.14725 1.49219 1.02925 1.10455 1.63761 1.18806 0.82153 0.86872 0.96122 1.21549 1.19066 1.23923 0.93916 0.93386 1.25888 0.95657 0.96987 1.00344 1.70050 1.25534 1.34581 1.26339 0.85249 0.78131 0.78397 0.78299 1.19494 1.19081 1.19827 1.22222 0.91564 0.83186 0.77210 1.90669 1.24665 1.75864 1.53989 1.21873 0.91488 1.00507 1.03016 1.21166 0.98996 0.90871 1.03639 1.83586 0.92060 1.07267 1.71505 0.89166 0.89085 0.89829 0.82331 0.85508 0.95969 0.96339 0.91993 0.84389 0.86723 0.87276 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.37 71.24 0.74 0.05 16 2 C -0.16 -2.57 6.50 24.66 0.16 -2.41 16 3 C -0.16 -3.10 10.01 21.12 0.21 -2.89 16 4 C -0.09 -2.54 9.88 21.70 0.21 -2.33 16 5 C -0.18 -4.86 6.40 24.02 0.15 -4.70 16 6 C 0.16 5.08 6.79 45.06 0.31 5.39 16 7 N -0.27 -11.51 10.93 -43.61 -0.48 -11.98 16 8 N -0.45 -22.39 3.46 -466.73 -1.61 -24.00 16 9 C 0.28 16.78 5.48 85.63 0.47 17.25 16 10 C -0.55 -34.06 9.38 25.60 0.24 -33.82 16 11 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 12 C 0.01 0.64 5.46 84.65 0.46 1.11 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 14 Si 0.98 46.84 29.54 68.60 2.03 48.87 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 C 0.47 21.47 7.53 87.72 0.66 22.13 16 19 O -0.57 -31.25 16.65 -3.16 -0.05 -31.30 16 20 C -0.13 -3.74 6.22 29.91 0.19 -3.55 16 21 C -0.11 -2.53 5.82 29.82 0.17 -2.36 16 22 S 0.19 3.18 22.11 -56.49 -1.25 1.93 16 23 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.13 3.98 7.98 -2.91 -0.02 3.96 16 28 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.02 1.22 7.35 -2.38 -0.02 1.21 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.13 2.05 7.19 -2.39 -0.02 2.03 16 Total: -1.00 -80.67 310.83 4.01 -76.67 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.11 Total: 3.60 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 3.98 Total: -6.13 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -1.81 Total: -93.63 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.05 Total: -31.30 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.25 Total: 1.93 kcal Total: -80.67 4.01 -76.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603923625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.399 kcal (2) G-P(sol) polarization free energy of solvation -80.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds