Wall clock time and date at job start Tue Mar 31 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00209 * 3 2 1 5 5 H 1.48500 * 109.46628 * 29.99896 * 3 2 1 6 6 H 1.48499 * 109.47411 * 149.99622 * 3 2 1 7 7 C 1.37882 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47343 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21727 * 119.99649 * 0.28335 * 13 12 11 15 15 C 1.46496 * 119.99867 * 179.97438 * 13 12 11 16 16 C 1.36112 * 125.70738 * 180.02562 * 15 13 12 17 17 C 1.42232 * 107.62382 * 180.02562 * 16 15 13 18 18 C 1.45595 * 140.77929 * 180.02562 * 17 16 15 19 19 C 1.31812 * 114.62949 * 179.97438 * 18 17 16 20 20 S 1.75355 * 111.24773 * 0.02562 * 19 18 17 21 21 C 1.38180 * 106.99446 * 0.02562 * 17 16 15 22 22 N 1.37462 * 108.16590 * 359.73630 * 21 17 16 23 23 H 0.96998 * 125.68322 * 180.26746 * 22 21 17 24 24 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47258 * 59.99883 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 27 27 H 1.09004 * 109.47108 * 59.99962 * 10 9 7 28 28 H 1.09004 * 109.47368 * 300.00063 * 10 9 7 29 29 H 1.09000 * 109.46497 * 60.00164 * 11 10 9 30 30 H 1.08996 * 109.46876 * 299.99773 * 11 10 9 31 31 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 32 32 H 1.07993 * 126.19131 * 0.02562 * 16 15 13 33 33 H 1.07995 * 122.68516 * 359.95233 * 18 17 16 34 34 H 1.07998 * 124.37534 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7861 -7.5937 -0.0034 15 6 2.9348 -8.4849 -0.0008 16 6 2.6110 -9.8069 -0.0005 17 6 3.8252 -10.5477 -0.0013 18 6 4.3086 -11.9210 -0.0021 19 6 5.6212 -12.0414 -0.0033 20 16 6.4032 -10.4719 -0.0029 21 6 4.8582 -9.6300 -0.0015 22 7 4.3111 -8.3689 -0.0068 23 1 4.8088 -7.5363 -0.0118 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8532 -5.0450 -0.8897 30 1 0.8538 -5.0446 0.8903 31 1 3.3858 -5.9235 -0.0008 32 1 1.6127 -10.2189 0.0002 33 1 3.6448 -12.7729 -0.0013 34 1 6.1470 -12.9847 -0.0043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:53 Heat of formation + Delta-G solvation = 16.856491 kcal Electronic energy + Delta-G solvation = -17743.876279 eV Core-core repulsion = 14768.482756 eV Total energy + Delta-G solvation = -2975.393524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51849 -39.15257 -35.61718 -35.56064 -33.40437 -31.37467 -30.70574 -28.89577 -26.73373 -23.93009 -23.26234 -22.10561 -20.81609 -20.28240 -19.41766 -19.29336 -16.87852 -16.46713 -15.67883 -15.61297 -15.25338 -14.82288 -14.80515 -14.49415 -14.00464 -13.76407 -13.63550 -12.95444 -12.34572 -12.12712 -12.00427 -11.91214 -11.75168 -11.11346 -10.95025 -10.82861 -10.65667 -10.23493 -9.95194 -9.75156 -9.49759 -9.18178 -9.00164 -8.54885 -8.41786 -7.93658 -6.06305 -4.09798 0.78559 1.05244 1.18706 1.69536 2.65401 2.83948 3.14413 3.27546 3.32046 3.34214 3.36694 4.39631 4.41774 4.63612 4.77719 5.15583 5.29538 5.32283 5.47222 5.57448 5.67466 5.82523 5.94539 6.05547 6.17469 6.28079 6.44971 6.49619 6.69796 6.87194 6.90777 7.48961 7.57680 7.69562 7.91713 8.12885 8.32560 8.96634 9.54656 11.04934 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.002683 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.091748 B =10434.068740 C =11176.410092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.723 5.723 13 C 0.581 3.419 14 O -0.524 6.524 15 C -0.002 4.002 16 C -0.072 4.072 17 C -0.163 4.163 18 C -0.069 4.069 19 C -0.224 4.224 20 S 0.130 5.870 21 C -0.010 4.010 22 N -0.525 5.525 23 H 0.421 0.579 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.392 0.608 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.766 -23.284 -0.002 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.373 5.373 13 C 0.367 3.633 14 O -0.401 6.401 15 C -0.116 4.116 16 C -0.100 4.100 17 C -0.176 4.176 18 C -0.099 4.099 19 C -0.357 4.357 20 S 0.384 5.616 21 C -0.239 4.239 22 N -0.129 5.129 23 H 0.260 0.740 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.198 -22.686 -0.002 26.246 hybrid contribution -0.216 1.035 -0.006 1.057 sum 12.982 -21.651 -0.009 25.245 Atomic orbital electron populations 1.69963 1.06060 1.26765 1.50379 1.25033 0.94869 0.99334 0.95211 0.86574 0.79781 0.83398 0.78121 1.20628 1.21151 1.19917 1.21183 0.92955 0.90922 1.51176 0.92681 1.19027 0.93812 0.90753 0.97771 1.21910 0.99860 0.93310 1.00865 1.21745 0.91714 0.84650 1.02500 1.46134 1.10611 1.05934 1.74623 1.16991 0.87294 0.81700 0.77342 1.90880 1.14742 1.84240 1.50191 1.20212 0.81099 0.95660 1.14585 1.20751 0.97624 0.89602 1.01975 1.19402 0.92884 0.92091 1.13235 1.20341 0.94623 0.94837 1.00111 1.24866 0.97453 1.00439 1.12990 1.83945 1.00408 0.96329 1.80957 1.23569 0.99419 0.88600 1.12341 1.41443 1.05240 1.05613 1.60557 0.74047 0.92861 0.96173 0.96176 0.92711 0.92706 0.91260 0.91260 0.77449 0.82477 0.83714 0.81264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 1.97 5.67 -4.04 -0.02 1.94 16 12 N -0.72 -10.01 5.55 -61.67 -0.34 -10.35 16 13 C 0.58 8.72 7.78 -12.93 -0.10 8.62 16 14 O -0.52 -9.76 16.85 5.16 0.09 -9.68 16 15 C 0.00 -0.03 6.97 -82.47 -0.57 -0.61 16 16 C -0.07 -0.88 10.58 -38.81 -0.41 -1.29 16 17 C -0.16 -1.82 6.80 -105.45 -0.72 -2.54 16 18 C -0.07 -0.59 10.42 -38.54 -0.40 -0.99 16 19 C -0.22 -1.63 11.03 28.84 0.32 -1.31 16 20 S 0.13 1.05 23.24 -107.50 -2.50 -1.45 16 21 C -0.01 -0.11 8.41 -15.05 -0.13 -0.24 16 22 N -0.52 -5.33 6.08 -7.94 -0.05 -5.38 16 23 H 0.42 3.13 8.14 -40.82 -0.33 2.79 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.39 4.23 7.54 -40.82 -0.31 3.92 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -32.79 313.11 -9.08 -41.87 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.99 Total: 1.43 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.73 Total: -11.60 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.35 Total: -41.55 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.79 -9.08 -41.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.730 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds