Wall clock time and date at job start Tue Mar 31 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00209 * 3 2 1 5 5 H 1.48500 * 109.46628 * 29.99896 * 3 2 1 6 6 H 1.48499 * 109.47411 * 149.99622 * 3 2 1 7 7 C 1.37882 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47343 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21727 * 119.99649 * 0.28335 * 13 12 11 15 15 C 1.46496 * 119.99867 * 179.97438 * 13 12 11 16 16 C 1.36112 * 125.70738 * 180.02562 * 15 13 12 17 17 C 1.42232 * 107.62382 * 180.02562 * 16 15 13 18 18 C 1.45595 * 140.77929 * 180.02562 * 17 16 15 19 19 C 1.31812 * 114.62949 * 179.97438 * 18 17 16 20 20 S 1.75355 * 111.24773 * 0.02562 * 19 18 17 21 21 C 1.38180 * 106.99446 * 0.02562 * 17 16 15 22 22 N 1.37462 * 108.16590 * 359.73630 * 21 17 16 23 23 H 0.96998 * 125.68322 * 180.26746 * 22 21 17 24 24 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47258 * 59.99883 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 27 27 H 1.09004 * 109.47108 * 59.99962 * 10 9 7 28 28 H 1.09004 * 109.47368 * 300.00063 * 10 9 7 29 29 H 1.09000 * 109.46497 * 60.00164 * 11 10 9 30 30 H 1.08996 * 109.46876 * 299.99773 * 11 10 9 31 31 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 32 32 H 1.07993 * 126.19131 * 0.02562 * 16 15 13 33 33 H 1.07995 * 122.68516 * 359.95233 * 18 17 16 34 34 H 1.07998 * 124.37534 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7861 -7.5937 -0.0034 15 6 2.9348 -8.4849 -0.0008 16 6 2.6110 -9.8069 -0.0005 17 6 3.8252 -10.5477 -0.0013 18 6 4.3086 -11.9210 -0.0021 19 6 5.6212 -12.0414 -0.0033 20 16 6.4032 -10.4719 -0.0029 21 6 4.8582 -9.6300 -0.0015 22 7 4.3111 -8.3689 -0.0068 23 1 4.8088 -7.5363 -0.0118 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8532 -5.0450 -0.8897 30 1 0.8538 -5.0446 0.8903 31 1 3.3858 -5.9235 -0.0008 32 1 1.6127 -10.2189 0.0002 33 1 3.6448 -12.7729 -0.0013 34 1 6.1470 -12.9847 -0.0043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609143714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:50 Heat of formation + Delta-G solvation = -4.887030 kcal Electronic energy + Delta-G solvation = -17744.819149 eV Core-core repulsion = 14768.482756 eV Total energy + Delta-G solvation = -2976.336394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.39757 -40.34786 -37.07862 -36.31842 -35.25363 -33.13364 -31.57260 -29.96111 -28.35189 -25.46494 -24.13032 -23.29121 -22.41329 -21.22011 -20.43828 -20.15375 -18.56483 -17.77276 -16.99590 -16.91707 -16.45367 -15.95837 -15.95517 -15.47984 -15.19408 -15.08698 -14.54004 -14.30116 -13.81184 -13.71220 -13.57422 -12.80842 -12.78048 -12.60998 -12.59356 -12.41497 -11.77024 -11.72598 -11.72064 -11.33918 -11.14629 -10.59524 -10.56898 -10.28485 -9.29998 -8.65537 -8.21089 -6.32601 0.07547 0.16038 0.42467 1.07264 1.40819 1.41953 1.52791 1.79949 1.90344 2.11049 2.28377 2.40904 3.12894 3.57940 3.81309 3.99450 4.09339 4.16682 4.42267 4.49747 4.63258 4.77113 4.88782 4.89868 5.08779 5.14867 5.19608 5.28931 5.42275 5.49355 5.63060 5.68079 5.82293 6.10911 6.20059 6.38604 6.84896 6.96821 7.37105 8.90994 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.002683 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.091748 B =10434.068740 C =11176.410092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.710 5.710 13 C 0.584 3.416 14 O -0.568 6.568 15 C -0.018 4.018 16 C -0.081 4.081 17 C -0.183 4.183 18 C -0.087 4.087 19 C -0.212 4.212 20 S 0.159 5.841 21 C -0.021 4.021 22 N -0.516 5.516 23 H 0.433 0.567 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.410 0.590 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.874 -24.250 -0.004 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.006 3.994 12 N -0.361 5.361 13 C 0.372 3.628 14 O -0.447 6.447 15 C -0.131 4.131 16 C -0.109 4.109 17 C -0.195 4.195 18 C -0.117 4.117 19 C -0.345 4.345 20 S 0.412 5.588 21 C -0.250 4.250 22 N -0.121 5.121 23 H 0.273 0.727 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 16.369 -23.650 -0.005 28.762 hybrid contribution -1.124 1.216 -0.006 1.656 sum 15.245 -22.434 -0.012 27.124 Atomic orbital electron populations 1.70109 1.07930 1.27819 1.51623 1.26023 0.95746 1.03557 0.94795 0.85420 0.78683 0.78327 0.78448 1.19834 1.21071 1.18433 1.21673 0.93738 0.91998 1.50518 0.91532 1.18941 0.94440 0.92850 0.95225 1.21613 0.98519 0.91671 1.02215 1.21350 0.91776 0.84923 1.01390 1.45835 1.11090 1.04924 1.74233 1.17236 0.87118 0.82190 0.76241 1.90853 1.16712 1.84883 1.52265 1.19741 0.81883 0.94723 1.16778 1.20924 0.98351 0.89935 1.01702 1.19737 0.92470 0.93698 1.13617 1.20551 0.95567 0.94267 1.01294 1.25327 0.97101 1.01386 1.10697 1.83938 0.98531 0.96140 1.80184 1.24041 1.00922 0.88483 1.11573 1.41313 1.04312 1.06319 1.60176 0.72659 0.92792 0.98820 0.98821 0.91270 0.91244 0.92533 0.92526 0.75357 0.82637 0.81839 0.78056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.43 5.67 86.38 0.49 4.92 16 12 N -0.71 -19.33 5.55 -467.23 -2.59 -21.92 16 13 C 0.58 17.74 7.78 86.39 0.67 18.41 16 14 O -0.57 -21.90 16.85 -4.43 -0.07 -21.98 16 15 C -0.02 -0.45 6.97 39.81 0.28 -0.17 16 16 C -0.08 -1.99 10.58 22.77 0.24 -1.75 16 17 C -0.18 -3.85 6.80 -20.40 -0.14 -3.99 16 18 C -0.09 -1.29 10.42 23.39 0.24 -1.05 16 19 C -0.21 -2.37 11.03 67.04 0.74 -1.63 16 20 S 0.16 2.10 23.24 -56.49 -1.31 0.79 16 21 C -0.02 -0.40 8.41 83.80 0.70 0.30 16 22 N -0.52 -9.83 6.08 -179.04 -1.09 -10.92 16 23 H 0.43 5.67 8.14 -92.71 -0.75 4.91 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.41 8.19 7.54 -92.71 -0.70 7.49 16 32 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -71.79 313.11 1.16 -70.63 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.31 Total: 11.01 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.24 Total: -16.57 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -3.40 Total: -89.31 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.07 Total: -21.98 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.31 Total: 0.79 kcal Total: -71.79 1.16 -70.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.739 kcal (2) G-P(sol) polarization free energy of solvation -71.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds