Wall clock time and date at job start Tue Mar 31 2020 00:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00417 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00168 * 3 2 1 5 5 H 1.48503 * 109.46892 * 30.00421 * 3 2 1 6 6 H 1.48499 * 109.47447 * 150.00235 * 3 2 1 7 7 C 1.38808 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99708 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00097 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99772 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46881 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99855 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00036 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.55041 * 350.58378 * 14 13 11 16 16 C 1.53005 * 117.49767 * 136.25353 * 14 13 11 17 17 C 1.52999 * 117.51777 * 204.88389 * 14 13 11 18 18 H 1.09003 * 117.50034 * 0.02562 * 17 14 13 19 19 C 1.50700 * 117.49887 * 145.02801 * 17 14 13 20 20 C 1.38671 * 120.41819 * 239.71980 * 19 17 14 21 21 C 1.38630 * 118.42021 * 179.78472 * 20 19 17 22 22 C 1.38220 * 119.15919 * 0.46917 * 21 20 19 23 23 N 1.31859 * 120.76533 * 359.77442 * 22 21 20 24 24 C 1.31878 * 121.72364 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99717 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46856 * 60.00417 * 10 9 7 27 27 H 1.08996 * 109.47237 * 299.99743 * 10 9 7 28 28 H 0.97006 * 119.99915 * 0.02562 * 13 11 10 29 29 H 1.09004 * 117.49360 * 215.00172 * 16 14 13 30 30 H 1.08995 * 117.49694 * 359.97438 * 16 14 13 31 31 H 1.07998 * 120.78899 * 0.02562 * 20 19 17 32 32 H 1.08001 * 120.41858 * 180.26684 * 21 20 19 33 33 H 1.08005 * 119.61852 * 179.78866 * 22 21 20 34 34 H 1.08004 * 119.61584 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7722 -1.2022 -0.0012 10 6 4.0864 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0021 12 8 6.3439 -2.2965 -0.0025 13 7 6.0456 -4.4949 -0.0026 14 6 7.4905 -4.7360 -0.0032 15 1 8.1139 -3.8564 -0.1640 16 6 8.0263 -5.8197 0.9348 17 6 7.9850 -6.0664 -0.5747 18 1 7.2351 -6.7623 -0.9509 19 6 9.2965 -6.0603 -1.3169 20 6 9.3538 -6.4566 -2.6446 21 6 10.5811 -6.4306 -3.2885 22 6 11.7007 -6.0227 -2.5880 23 7 11.6096 -5.6573 -1.3243 24 6 10.4581 -5.6649 -0.6816 25 1 -0.4850 0.8401 0.0004 26 1 3.6432 -3.4318 -0.8907 27 1 3.6439 -3.4315 0.8893 28 1 5.4289 -5.2437 -0.0026 29 1 9.0021 -5.6529 1.3909 30 1 7.3037 -6.3528 1.5525 31 1 8.4627 -6.7742 -3.1656 32 1 10.6620 -6.7283 -4.3235 33 1 12.6612 -6.0029 -3.0815 34 1 10.4226 -5.3583 0.3534 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619580966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:38 Heat of formation + Delta-G solvation = 22.053239 kcal Electronic energy + Delta-G solvation = -17705.614757 eV Core-core repulsion = 14730.446581 eV Total energy + Delta-G solvation = -2975.168176 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71542 -39.45867 -37.42823 -33.47734 -32.59082 -32.46288 -30.92285 -29.08511 -25.64897 -24.76048 -23.82082 -22.39495 -21.11532 -20.61866 -17.99112 -17.57767 -16.95417 -16.52782 -16.05794 -15.43698 -15.09454 -14.99957 -14.55333 -14.17475 -13.97461 -13.55976 -13.36033 -12.96781 -12.82040 -12.55471 -12.33141 -12.07292 -11.58121 -11.29502 -11.04685 -11.01168 -10.64733 -10.05812 -9.89046 -9.75480 -9.64150 -9.35289 -9.02798 -8.67649 -8.53933 -6.95400 -6.31476 -4.03692 0.75192 0.96688 2.65633 2.77233 3.17864 3.31652 3.38511 3.48840 3.57019 3.79226 4.09464 4.30900 4.34527 4.44658 4.49305 4.59626 4.66542 4.69471 4.73023 4.94776 5.07673 5.13429 5.20744 5.40525 5.50976 5.63065 5.70138 5.74850 5.82028 5.95280 5.96610 6.37051 6.43543 7.47793 7.67239 7.91515 8.37556 8.38964 9.14610 10.77711 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.036945 B = 0.002986 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.707276 B = 9375.064280 C = 9570.342523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.709 5.709 14 C 0.107 3.893 15 H 0.140 0.860 16 C -0.184 4.184 17 C -0.127 4.127 18 H 0.119 0.881 19 C -0.098 4.098 20 C -0.069 4.069 21 C -0.169 4.169 22 C 0.090 3.910 23 N -0.481 5.481 24 C 0.098 3.902 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.402 0.598 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.300 -16.645 -3.207 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.322 3.678 12 O -0.388 6.388 13 N -0.360 5.360 14 C 0.000 4.000 15 H 0.157 0.843 16 C -0.223 4.223 17 C -0.148 4.148 18 H 0.137 0.863 19 C -0.100 4.100 20 C -0.095 4.095 21 C -0.189 4.189 22 C -0.067 4.067 23 N -0.189 5.189 24 C -0.059 4.059 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.237 0.763 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.172 0.828 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 20.144 -14.670 -2.767 25.073 hybrid contribution -1.950 -1.109 -0.584 2.318 sum 18.194 -15.779 -3.350 24.315 Atomic orbital electron populations 1.69936 1.05922 1.27809 1.47965 1.24716 0.94459 0.98992 0.93145 0.86735 0.81903 0.83256 0.79963 1.19186 1.19901 1.15897 1.22309 0.88202 0.97556 1.58916 0.89355 1.84821 1.09362 0.99757 1.97436 1.23281 0.93553 1.04663 1.05967 1.20339 0.90701 0.82021 0.74778 1.90705 1.58736 1.42093 1.47272 1.45404 1.05527 1.08381 1.76727 1.21704 0.83429 0.93360 1.01551 0.84279 1.23660 1.03751 1.03233 0.91613 1.21485 0.96114 1.01549 0.95624 0.86311 1.20083 0.94888 1.00327 0.94727 1.21447 0.98282 0.96161 0.93599 1.22155 0.93596 1.01635 1.01527 1.22793 0.98789 0.94746 0.90384 1.67718 1.27788 1.13646 1.09780 1.22723 0.87264 0.95715 1.00185 0.91903 0.88352 0.88255 0.76340 0.87495 0.87580 0.84720 0.84657 0.82770 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.09 16 11 C 0.54 9.16 7.85 -10.98 -0.09 9.08 16 12 O -0.51 -10.87 15.43 5.56 0.09 -10.79 16 13 N -0.71 -8.47 5.57 -53.80 -0.30 -8.77 16 14 C 0.11 1.14 6.07 -67.93 -0.41 0.73 16 15 H 0.14 1.81 7.40 -51.93 -0.38 1.43 16 16 C -0.18 -1.44 9.79 -26.73 -0.26 -1.70 16 17 C -0.13 -1.04 5.99 -91.77 -0.55 -1.59 16 18 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.10 -0.89 5.62 -104.48 -0.59 -1.48 16 20 C -0.07 -0.57 9.89 -39.28 -0.39 -0.96 16 21 C -0.17 -1.29 10.11 -39.44 -0.40 -1.68 16 22 C 0.09 0.78 11.18 -17.55 -0.20 0.59 16 23 N -0.48 -5.25 10.36 -13.25 -0.14 -5.38 16 24 C 0.10 0.97 10.47 -17.55 -0.18 0.79 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 27 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 28 H 0.40 3.55 8.83 -40.82 -0.36 3.19 16 29 H 0.11 0.74 6.21 -51.93 -0.32 0.42 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.16 1.30 6.04 -52.48 -0.32 0.98 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -34.72 312.80 -8.12 -42.84 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.92 Total: 1.76 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.63 Total: -10.21 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.34 Total: -39.76 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.72 -8.12 -42.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619580966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.896 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds