Wall clock time and date at job start Tue Mar 31 2020 00:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00417 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00168 * 3 2 1 5 5 H 1.48503 * 109.46892 * 30.00421 * 3 2 1 6 6 H 1.48499 * 109.47447 * 150.00235 * 3 2 1 7 7 C 1.38808 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99708 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00097 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99772 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46881 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99855 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00036 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.55041 * 350.58378 * 14 13 11 16 16 C 1.53005 * 117.49767 * 136.25353 * 14 13 11 17 17 C 1.52999 * 117.51777 * 204.88389 * 14 13 11 18 18 H 1.09003 * 117.50034 * 0.02562 * 17 14 13 19 19 C 1.50700 * 117.49887 * 145.02801 * 17 14 13 20 20 C 1.38671 * 120.41819 * 239.71980 * 19 17 14 21 21 C 1.38630 * 118.42021 * 179.78472 * 20 19 17 22 22 C 1.38220 * 119.15919 * 0.46917 * 21 20 19 23 23 N 1.31859 * 120.76533 * 359.77442 * 22 21 20 24 24 C 1.31878 * 121.72364 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99717 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46856 * 60.00417 * 10 9 7 27 27 H 1.08996 * 109.47237 * 299.99743 * 10 9 7 28 28 H 0.97006 * 119.99915 * 0.02562 * 13 11 10 29 29 H 1.09004 * 117.49360 * 215.00172 * 16 14 13 30 30 H 1.08995 * 117.49694 * 359.97438 * 16 14 13 31 31 H 1.07998 * 120.78899 * 0.02562 * 20 19 17 32 32 H 1.08001 * 120.41858 * 180.26684 * 21 20 19 33 33 H 1.08005 * 119.61852 * 179.78866 * 22 21 20 34 34 H 1.08004 * 119.61584 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7722 -1.2022 -0.0012 10 6 4.0864 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0021 12 8 6.3439 -2.2965 -0.0025 13 7 6.0456 -4.4949 -0.0026 14 6 7.4905 -4.7360 -0.0032 15 1 8.1139 -3.8564 -0.1640 16 6 8.0263 -5.8197 0.9348 17 6 7.9850 -6.0664 -0.5747 18 1 7.2351 -6.7623 -0.9509 19 6 9.2965 -6.0603 -1.3169 20 6 9.3538 -6.4566 -2.6446 21 6 10.5811 -6.4306 -3.2885 22 6 11.7007 -6.0227 -2.5880 23 7 11.6096 -5.6573 -1.3243 24 6 10.4581 -5.6649 -0.6816 25 1 -0.4850 0.8401 0.0004 26 1 3.6432 -3.4318 -0.8907 27 1 3.6439 -3.4315 0.8893 28 1 5.4289 -5.2437 -0.0026 29 1 9.0021 -5.6529 1.3909 30 1 7.3037 -6.3528 1.5525 31 1 8.4627 -6.7742 -3.1656 32 1 10.6620 -6.7283 -4.3235 33 1 12.6612 -6.0029 -3.0815 34 1 10.4226 -5.3583 0.3534 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619580966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:36 Heat of formation + Delta-G solvation = -2.063518 kcal Electronic energy + Delta-G solvation = -17706.660538 eV Core-core repulsion = 14730.446581 eV Total energy + Delta-G solvation = -2976.213957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42922 -40.61153 -38.34807 -34.68699 -34.53498 -33.27872 -31.74674 -30.39594 -27.85934 -25.41243 -24.50025 -23.29467 -21.87627 -21.72473 -19.91206 -18.38967 -17.87315 -17.72462 -17.12153 -16.89681 -16.46853 -16.21929 -15.74634 -15.13262 -15.05315 -14.85342 -14.77309 -13.95973 -13.93695 -13.73642 -13.35345 -13.11108 -13.01803 -12.67787 -12.64792 -12.52841 -11.88232 -11.74208 -11.17486 -11.09608 -10.70949 -10.53824 -10.40442 -10.15286 -9.52978 -9.00030 -8.51972 -6.22687 0.09923 0.33203 0.97622 1.31138 1.46074 1.47950 1.54306 2.11749 2.24880 2.67291 2.70578 2.86451 3.09221 3.46098 3.66280 3.72853 3.78281 3.87345 4.00209 4.06291 4.11789 4.23816 4.38750 4.46303 4.59579 4.73157 4.88291 4.93295 5.04615 5.21549 5.33158 5.44512 5.70559 5.77041 6.11409 6.42058 6.93468 7.01749 7.15742 8.60343 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.036945 B = 0.002986 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.707276 B = 9375.064280 C = 9570.342523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.110 4.110 11 C 0.539 3.461 12 O -0.562 6.562 13 N -0.682 5.682 14 C 0.075 3.925 15 H 0.111 0.889 16 C -0.164 4.164 17 C -0.104 4.104 18 H 0.141 0.859 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.168 4.168 22 C 0.077 3.923 23 N -0.514 5.514 24 C 0.081 3.919 25 H 0.277 0.723 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.421 0.579 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.304 -18.351 -3.693 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.261 4.261 11 C 0.325 3.675 12 O -0.440 6.440 13 N -0.334 5.334 14 C -0.032 4.032 15 H 0.129 0.871 16 C -0.203 4.203 17 C -0.124 4.124 18 H 0.159 0.841 19 C -0.114 4.114 20 C -0.102 4.102 21 C -0.187 4.187 22 C -0.080 4.080 23 N -0.222 5.222 24 C -0.075 4.075 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.259 0.741 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.193 0.807 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 21.148 -16.443 -3.248 26.984 hybrid contribution -2.170 -0.779 -0.478 2.354 sum 18.978 -17.223 -3.727 25.897 Atomic orbital electron populations 1.70012 1.07273 1.29016 1.49169 1.25554 0.95265 1.02232 0.92947 0.85880 0.80691 0.79701 0.80189 1.18748 1.18371 1.16100 1.22455 0.90160 0.96722 1.58171 0.91762 1.84774 1.06526 1.06269 1.97600 1.23260 0.95411 0.99620 1.07775 1.19995 0.89496 0.83173 0.74836 1.90695 1.59366 1.43885 1.50094 1.45068 1.06725 1.07052 1.74530 1.21691 0.81920 0.93871 1.05682 0.87123 1.23767 1.04181 1.00492 0.91814 1.21513 0.95822 0.99231 0.95850 0.84094 1.20230 0.94927 1.00773 0.95430 1.21814 0.99399 0.95576 0.93380 1.22490 0.92955 1.00527 1.02742 1.23263 1.00348 0.94370 0.89986 1.67702 1.28556 1.14894 1.11087 1.22911 0.87624 0.96238 1.00756 0.91364 0.86552 0.86426 0.74136 0.86755 0.85754 0.82660 0.81853 0.80725 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.50 13.97 21.65 0.30 -55.20 16 2 C 0.05 2.65 5.50 84.86 0.47 3.12 16 3 Si 0.91 44.86 27.74 68.60 1.90 46.76 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 7 C -0.53 -30.34 10.04 67.96 0.68 -29.66 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.90 18.55 -56.49 -1.05 -9.94 16 10 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16 11 C 0.54 17.85 7.85 87.66 0.69 18.53 16 12 O -0.56 -23.85 15.43 -3.02 -0.05 -23.89 16 13 N -0.68 -14.81 5.57 -442.53 -2.46 -17.28 16 14 C 0.07 1.48 6.07 44.99 0.27 1.75 16 15 H 0.11 2.91 7.40 -2.39 -0.02 2.90 16 16 C -0.16 -2.13 9.79 30.60 0.30 -1.83 16 17 C -0.10 -1.41 5.99 -11.54 -0.07 -1.48 16 18 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 19 C -0.11 -1.83 5.62 -19.77 -0.11 -1.94 16 20 C -0.08 -1.06 9.89 22.47 0.22 -0.84 16 21 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 22 C 0.08 1.23 11.18 84.68 0.95 2.18 16 23 N -0.51 -10.91 10.36 -195.84 -2.03 -12.94 16 24 C 0.08 1.55 10.47 84.67 0.89 2.43 16 25 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 26 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.42 6.00 8.83 -92.70 -0.82 5.18 16 29 H 0.11 1.34 6.21 -2.38 -0.01 1.33 16 30 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.16 2.62 6.04 -2.91 -0.02 2.61 16 Total: -1.00 -76.69 312.80 1.84 -74.85 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.27 Total: 10.83 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.95 Total: -13.18 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -4.19 Total: -85.42 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.94 kcal Total: -76.69 1.84 -74.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619580966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.784 kcal (2) G-P(sol) polarization free energy of solvation -76.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds