Wall clock time and date at job start Tue Mar 31 2020 00:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 179.97438 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.32814 * 118.86528 * 359.73152 * 12 11 10 14 14 C 1.32012 * 120.74131 * 179.81175 * 13 12 11 15 15 C 1.40149 * 118.60110 * 0.51741 * 14 13 12 16 16 C 1.39975 * 119.04699 * 359.58786 * 15 14 13 17 17 N 1.32152 * 118.51202 * 0.24502 * 16 15 14 18 18 C 1.50253 * 121.60059 * 180.54862 * 16 15 14 19 19 C 1.52683 * 111.15660 * 337.52857 * 18 16 15 20 20 C 1.53416 * 109.50389 * 54.32586 * 19 18 16 21 21 C 1.46906 * 120.64243 * 179.50377 * 15 14 13 22 22 O 1.21309 * 121.24366 * 348.49830 * 21 15 14 23 23 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.07996 * 120.70036 * 180.25157 * 14 13 12 29 29 H 1.09006 * 109.14520 * 97.95428 * 18 16 15 30 30 H 1.09002 * 109.14369 * 217.08919 * 18 16 15 31 31 H 1.08998 * 109.46214 * 294.31566 * 19 18 16 32 32 H 1.08994 * 109.46090 * 174.33656 * 19 18 16 33 33 H 1.09001 * 109.86059 * 176.58729 * 20 19 18 34 34 H 1.08999 * 109.86374 * 55.56771 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6367 -0.0025 12 6 6.1374 -4.3718 -0.0028 13 7 5.1033 -5.2052 0.0034 14 6 5.2898 -6.5121 -0.0004 15 6 6.6027 -7.0024 0.0000 16 6 7.6675 -6.0939 -0.0044 17 7 7.3936 -4.8010 -0.0039 18 6 9.0970 -6.5563 -0.0165 19 6 9.2203 -7.9798 0.5217 20 6 8.2815 -8.9066 -0.2615 21 6 6.8619 -8.4484 0.0069 22 8 5.9729 -9.2460 0.2191 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6584 -3.1503 0.8892 27 1 3.6578 -3.1506 -0.8907 28 1 4.4484 -7.1891 0.0006 29 1 9.4736 -6.5271 -1.0390 30 1 9.6945 -5.8871 0.6026 31 1 8.9476 -7.9940 1.5769 32 1 10.2483 -8.3234 0.4076 33 1 8.4089 -9.9348 0.0771 34 1 8.4975 -8.8376 -1.3277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000629194054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:54 Heat of formation + Delta-G solvation = -9.672543 kcal Electronic energy + Delta-G solvation = -18143.944566 eV Core-core repulsion = 15167.400657 eV Total energy + Delta-G solvation = -2976.543909 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44253 -39.20808 -36.48802 -33.93133 -33.61110 -31.67922 -31.27335 -29.16801 -26.05666 -25.01679 -24.55466 -22.20692 -20.99579 -20.11350 -18.05593 -17.79002 -17.02128 -16.81365 -15.81465 -15.25616 -15.00067 -14.75797 -14.47941 -14.39723 -13.98466 -13.88546 -13.50066 -13.15334 -12.79645 -12.29008 -12.17153 -11.82661 -11.75535 -11.35072 -11.27561 -10.79694 -10.52825 -10.45338 -10.21492 -10.00626 -9.86026 -9.76295 -9.44939 -9.28716 -8.64133 -7.67100 -6.13882 -4.14737 0.04195 0.91364 1.35274 2.00223 2.52727 3.26025 3.33885 3.36594 3.44693 3.66794 3.71881 4.10239 4.28378 4.36768 4.40744 4.46017 4.57396 4.83729 4.95543 5.11476 5.18990 5.28886 5.32758 5.49145 5.55264 5.62170 5.83163 5.92693 6.01112 6.46201 6.68871 6.98402 7.09386 7.14741 7.58916 7.70580 8.39428 8.88898 9.45521 10.98736 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.039247 B = 0.003491 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.267375 B = 8019.273044 C = 8677.670940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.079 4.079 11 S -0.002 6.002 12 C 0.327 3.673 13 N -0.528 5.528 14 C 0.228 3.772 15 C -0.310 4.310 16 C 0.242 3.758 17 N -0.516 5.516 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.164 4.164 21 C 0.414 3.586 22 O -0.454 6.454 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.180 0.820 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.441 -15.407 -0.521 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.095 0.905 9 C -0.040 4.040 10 C -0.227 4.227 11 S 0.240 5.760 12 C -0.045 4.045 13 N -0.246 5.246 14 C 0.057 3.943 15 C -0.320 4.320 16 C 0.090 3.910 17 N -0.234 5.234 18 C -0.117 4.117 19 C -0.150 4.150 20 C -0.201 4.201 21 C 0.290 3.710 22 O -0.329 6.329 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.197 0.803 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 20.365 -13.575 -0.398 24.478 hybrid contribution -0.424 -1.005 -0.059 1.092 sum 19.941 -14.580 -0.457 24.707 Atomic orbital electron populations 1.69891 1.06260 1.27166 1.50168 1.24962 0.94754 0.99108 0.94232 0.86810 0.80458 0.83551 0.78771 1.20014 1.21095 1.18825 1.20893 0.88020 0.94960 1.52080 0.90485 1.19459 0.97908 0.89054 0.97594 1.23879 0.87484 1.04648 1.06709 1.86027 1.12727 0.91021 1.86186 1.25717 0.86633 1.01956 0.90172 1.69140 1.33570 1.04085 1.17814 1.23623 0.95709 0.91497 0.83463 1.21686 0.96313 0.97665 1.16385 1.21843 0.95986 0.88086 0.85067 1.68589 1.20801 1.16033 1.18004 1.20464 0.89923 0.97064 1.04222 1.21527 1.00454 0.92793 1.00263 1.22338 0.93121 1.01531 1.03145 1.22248 0.90453 0.86825 0.71427 1.90568 1.48529 1.57009 1.36767 0.92443 0.95458 0.95894 0.88923 0.88963 0.80307 0.88098 0.88119 0.90840 0.89166 0.88338 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.00 -0.01 4.04 -27.88 -0.11 -0.12 16 10 C -0.08 -1.57 4.73 37.16 0.18 -1.40 16 11 S 0.00 -0.03 22.24 -107.50 -2.39 -2.42 16 12 C 0.33 5.45 7.85 -90.45 -0.71 4.74 16 13 N -0.53 -8.75 9.09 -13.01 -0.12 -8.87 16 14 C 0.23 3.17 10.90 -16.76 -0.18 2.99 16 15 C -0.31 -3.73 5.82 -105.02 -0.61 -4.34 16 16 C 0.24 2.82 6.70 -82.02 -0.55 2.27 16 17 N -0.52 -7.65 10.31 -9.41 -0.10 -7.74 16 18 C -0.08 -0.55 5.94 -28.26 -0.17 -0.71 16 19 C -0.11 -0.56 5.89 -26.68 -0.16 -0.71 16 20 C -0.16 -0.99 6.19 -27.24 -0.17 -1.16 16 21 C 0.41 4.29 6.89 -30.38 -0.21 4.08 16 22 O -0.45 -6.02 17.37 5.53 0.10 -5.92 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.09 1.88 8.10 -51.92 -0.42 1.46 16 27 H 0.09 1.87 8.11 -51.91 -0.42 1.44 16 28 H 0.18 2.16 7.82 -52.49 -0.41 1.75 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -32.25 305.20 -9.07 -41.32 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -4.14 Total: -3.87 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.12 Total: -7.21 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.56 Total: -42.99 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: 0.10 Total: -5.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.39 Total: -2.42 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.25 -9.07 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629194054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.644 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds