Wall clock time and date at job start Tue Mar 31 2020 00:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 179.97438 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.32814 * 118.86528 * 359.73152 * 12 11 10 14 14 C 1.32012 * 120.74131 * 179.81175 * 13 12 11 15 15 C 1.40149 * 118.60110 * 0.51741 * 14 13 12 16 16 C 1.39975 * 119.04699 * 359.58786 * 15 14 13 17 17 N 1.32152 * 118.51202 * 0.24502 * 16 15 14 18 18 C 1.50253 * 121.60059 * 180.54862 * 16 15 14 19 19 C 1.52683 * 111.15660 * 337.52857 * 18 16 15 20 20 C 1.53416 * 109.50389 * 54.32586 * 19 18 16 21 21 C 1.46906 * 120.64243 * 179.50377 * 15 14 13 22 22 O 1.21309 * 121.24366 * 348.49830 * 21 15 14 23 23 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.07996 * 120.70036 * 180.25157 * 14 13 12 29 29 H 1.09006 * 109.14520 * 97.95428 * 18 16 15 30 30 H 1.09002 * 109.14369 * 217.08919 * 18 16 15 31 31 H 1.08998 * 109.46214 * 294.31566 * 19 18 16 32 32 H 1.08994 * 109.46090 * 174.33656 * 19 18 16 33 33 H 1.09001 * 109.86059 * 176.58729 * 20 19 18 34 34 H 1.08999 * 109.86374 * 55.56771 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6367 -0.0025 12 6 6.1374 -4.3718 -0.0028 13 7 5.1033 -5.2052 0.0034 14 6 5.2898 -6.5121 -0.0004 15 6 6.6027 -7.0024 0.0000 16 6 7.6675 -6.0939 -0.0044 17 7 7.3936 -4.8010 -0.0039 18 6 9.0970 -6.5563 -0.0165 19 6 9.2203 -7.9798 0.5217 20 6 8.2815 -8.9066 -0.2615 21 6 6.8619 -8.4484 0.0069 22 8 5.9729 -9.2460 0.2191 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6584 -3.1503 0.8892 27 1 3.6578 -3.1506 -0.8907 28 1 4.4484 -7.1891 0.0006 29 1 9.4736 -6.5271 -1.0390 30 1 9.6945 -5.8871 0.6026 31 1 8.9476 -7.9940 1.5769 32 1 10.2483 -8.3234 0.4076 33 1 8.4089 -9.9348 0.0771 34 1 8.4975 -8.8376 -1.3277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000629194054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:52 Heat of formation + Delta-G solvation = -29.954213 kcal Electronic energy + Delta-G solvation = -18144.824046 eV Core-core repulsion = 15167.400657 eV Total energy + Delta-G solvation = -2977.423388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45577 -40.14886 -37.24446 -35.83629 -34.74645 -33.37084 -32.53088 -29.86540 -27.80371 -26.30910 -25.41432 -22.96890 -22.84546 -20.94804 -19.25964 -19.04736 -18.83520 -17.68162 -16.80183 -16.48167 -16.26943 -15.90717 -15.81095 -15.49228 -15.15981 -14.91132 -14.80530 -14.57875 -13.88244 -13.79655 -13.17174 -13.12099 -12.78887 -12.37596 -12.24849 -12.17663 -11.97759 -11.88098 -11.75394 -11.71193 -11.31689 -11.08849 -10.81306 -10.77264 -10.50449 -9.00359 -8.33296 -6.40277 -1.01519 -0.13672 0.04540 1.02870 1.09994 1.36998 1.38528 1.50237 2.33831 2.38882 2.80911 2.89592 3.01437 3.21302 3.24572 3.61534 3.87442 3.98285 4.12770 4.18226 4.22680 4.25202 4.58178 4.68563 4.70405 4.79398 4.90380 5.09189 5.14614 5.18665 5.22891 5.25830 5.50536 5.63617 6.18678 6.32340 6.57894 6.65904 7.23965 8.83016 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.039247 B = 0.003491 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.267375 B = 8019.273044 C = 8677.670940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.036 0.964 9 C 0.005 3.995 10 C -0.072 4.072 11 S 0.015 5.985 12 C 0.309 3.691 13 N -0.558 5.558 14 C 0.209 3.791 15 C -0.305 4.305 16 C 0.243 3.757 17 N -0.525 5.525 18 C -0.078 4.078 19 C -0.104 4.104 20 C -0.154 4.154 21 C 0.415 3.585 22 O -0.487 6.487 23 H 0.269 0.731 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.187 0.813 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.568 -16.090 -0.793 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.035 4.035 10 C -0.221 4.221 11 S 0.255 5.745 12 C -0.064 4.064 13 N -0.276 5.276 14 C 0.040 3.960 15 C -0.315 4.315 16 C 0.093 3.907 17 N -0.243 5.243 18 C -0.115 4.115 19 C -0.142 4.142 20 C -0.192 4.192 21 C 0.294 3.706 22 O -0.364 6.364 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.204 0.796 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.517 -14.311 -0.670 28.396 hybrid contribution -1.675 -1.040 0.024 1.971 sum 22.842 -15.351 -0.646 27.529 Atomic orbital electron populations 1.70046 1.08316 1.28467 1.51772 1.25960 0.95627 1.03465 0.93677 0.85687 0.79642 0.78054 0.79552 1.18772 1.20675 1.16700 1.21194 0.90741 0.93580 1.51676 0.94612 1.19304 0.94845 0.91242 0.98074 1.23451 0.90561 1.02398 1.05668 1.85665 1.08799 0.92435 1.87554 1.25526 0.87618 1.01437 0.91818 1.69061 1.34266 1.05331 1.18949 1.23886 0.97380 0.90857 0.83910 1.22077 0.95612 0.99365 1.14426 1.22726 0.98302 0.86734 0.82979 1.68621 1.19579 1.17736 1.18372 1.20740 0.86329 0.98359 1.06092 1.21577 1.02210 0.91012 0.99426 1.22420 0.89385 1.02477 1.04873 1.22905 0.92334 0.85407 0.70004 1.90567 1.50183 1.57354 1.38339 0.92179 0.94815 0.94880 0.90136 0.90038 0.79633 0.85528 0.87149 0.91497 0.85285 0.86766 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.95 43.51 27.47 68.60 1.88 45.39 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.53 -30.75 9.66 25.60 0.25 -30.51 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 9 C 0.00 0.22 4.04 29.85 0.12 0.34 16 10 C -0.07 -2.97 4.73 71.98 0.34 -2.63 16 11 S 0.02 0.52 22.24 -56.49 -1.26 -0.73 16 12 C 0.31 10.31 7.85 180.29 1.41 11.73 16 13 N -0.56 -19.03 9.09 -195.07 -1.77 -20.81 16 14 C 0.21 5.92 10.90 85.13 0.93 6.85 16 15 C -0.30 -6.98 5.82 -20.12 -0.12 -7.10 16 16 C 0.24 5.13 6.70 42.79 0.29 5.42 16 17 N -0.52 -14.86 10.31 -183.68 -1.89 -16.75 16 18 C -0.08 -0.74 5.94 29.60 0.18 -0.57 16 19 C -0.10 -0.52 5.89 30.63 0.18 -0.34 16 20 C -0.15 -1.20 6.19 30.26 0.19 -1.02 16 21 C 0.42 7.78 6.89 28.23 0.19 7.97 16 22 O -0.49 -12.51 17.37 -3.12 -0.05 -12.56 16 23 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 25 H 0.03 1.48 7.57 -2.39 -0.02 1.47 16 26 H 0.08 3.45 8.10 -2.39 -0.02 3.43 16 27 H 0.08 3.47 8.11 -2.40 -0.02 3.45 16 28 H 0.19 4.74 7.82 -2.91 -0.02 4.72 16 29 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -73.57 305.20 2.69 -70.89 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.06 Total: 2.22 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.42 Total: -8.76 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -3.37 Total: -96.44 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.05 Total: -12.56 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.26 Total: -0.73 kcal Total: -73.57 2.69 -70.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629194054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.931 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds