Wall clock time and date at job start Tue Mar 31 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.46759 * 2 1 4 4 C 1.52689 * 109.46533 * 119.99051 * 2 1 3 5 5 C 1.50256 * 111.15054 * 174.32126 * 4 2 1 6 6 N 1.32119 * 119.89571 * 157.96912 * 5 4 2 7 7 C 1.32741 * 120.83095 * 180.02562 * 6 5 4 8 8 S 1.76201 * 118.85456 * 179.75995 * 7 6 5 9 9 C 1.76202 * 99.99800 * 179.75315 * 8 7 6 10 10 H 1.08002 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.38926 * 119.99826 * 180.02562 * 9 8 7 12 12 N 1.31461 * 120.00030 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99973 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47290 * 89.99710 * 13 11 9 15 15 H 1.48501 * 109.46851 * 209.99896 * 13 11 9 16 16 H 1.48506 * 109.46831 * 329.99326 * 13 11 9 17 17 N 1.32806 * 122.29311 * 359.50288 * 7 6 5 18 18 C 1.31996 * 120.74623 * 0.32157 * 17 7 6 19 19 C 1.40025 * 121.60055 * 337.69602 * 5 4 2 20 20 C 1.46888 * 120.31097 * 0.36347 * 19 5 4 21 21 O 1.21324 * 121.24584 * 168.61170 * 20 19 5 22 22 C 1.51562 * 117.51318 * 348.59508 * 20 19 5 23 23 H 1.09003 * 109.47107 * 300.01194 * 1 2 3 24 24 H 1.09003 * 109.47311 * 60.00878 * 1 2 3 25 25 H 1.09003 * 109.47691 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47398 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47369 * 299.98813 * 3 2 1 28 28 H 1.09001 * 109.46974 * 59.98798 * 3 2 1 29 29 H 1.09003 * 109.14512 * 53.89615 * 4 2 1 30 30 H 1.08996 * 109.14437 * 294.75271 * 4 2 1 31 31 H 0.96998 * 119.99811 * 180.02562 * 12 11 9 32 32 H 1.07991 * 120.70816 * 180.02562 * 18 17 7 33 33 H 1.09004 * 109.85662 * 283.05034 * 22 20 19 34 34 H 1.09002 * 109.91373 * 162.06717 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0387 -0.7196 1.2469 5 6 3.5342 -0.8629 1.2178 6 7 4.2002 -1.0457 2.3441 7 6 5.5214 -1.1741 2.3400 8 16 6.3575 -1.4095 3.8730 9 6 8.0202 -1.5216 3.3005 10 1 8.2346 -1.4400 2.2452 11 6 9.0552 -1.7161 4.2066 12 7 8.7941 -1.8159 5.4912 13 14 10.8178 -1.8357 3.5997 14 1 11.4259 -0.4812 3.5751 15 1 11.5968 -2.7117 4.5113 16 1 10.8318 -2.4096 2.2300 17 7 6.2345 -1.1363 1.2203 18 6 5.6467 -0.9605 0.0516 19 6 4.2528 -0.8136 0.0170 20 6 3.5526 -0.6101 -1.2581 21 8 4.1615 -0.3611 -2.2776 22 6 2.0413 -0.7231 -1.2528 23 1 -0.3633 0.5140 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.1298 1.4426 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6763 1.9563 0.8899 29 1 1.5858 -1.7097 1.2980 30 1 1.7514 -0.1500 2.1306 31 1 9.5168 -1.9513 6.1238 32 1 6.2271 -0.9303 -0.8586 33 1 1.7485 -1.7725 -1.2201 34 1 1.6306 -0.2519 -2.1459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000631020321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:05 Heat of formation + Delta-G solvation = -16.927045 kcal Electronic energy + Delta-G solvation = -18962.398192 eV Core-core repulsion = 15985.539704 eV Total energy + Delta-G solvation = -2976.858488 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87181 -38.67520 -37.30174 -33.30265 -32.87956 -31.60772 -28.90734 -27.66855 -27.40516 -25.92645 -24.34014 -22.61971 -20.64315 -18.91574 -18.19138 -17.05714 -16.54427 -16.03250 -15.14430 -15.07073 -14.94526 -14.41464 -14.33685 -13.97891 -13.35706 -13.34819 -13.07218 -12.52457 -12.33703 -12.07624 -11.91166 -11.71803 -11.34900 -11.27841 -11.13878 -11.02464 -10.93971 -10.55360 -10.21913 -10.03219 -9.72260 -9.28246 -9.10022 -9.05317 -8.46846 -7.12604 -6.69601 -4.38422 0.78976 1.78659 2.61866 2.64530 3.08278 3.12429 3.20405 3.83849 4.22932 4.23712 4.31123 4.55854 4.64789 4.73426 4.79136 5.00691 5.05835 5.26195 5.30185 5.39715 5.42780 5.49382 5.58884 5.60794 5.73401 5.85732 5.88174 5.92375 5.99849 6.13413 6.20164 6.26959 6.85789 7.37042 7.58336 7.78666 8.22357 8.67692 8.82701 10.36739 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.004564 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.732424 B = 6133.571202 C = 6770.480951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.150 4.150 4 C -0.065 4.065 5 C 0.244 3.756 6 N -0.536 5.536 7 C 0.271 3.729 8 S 0.222 5.778 9 C -0.551 4.551 10 H 0.115 0.885 11 C 0.078 3.922 12 N -0.864 5.864 13 Si 0.935 3.065 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.264 1.264 17 N -0.530 5.530 18 C 0.224 3.776 19 C -0.352 4.352 20 C 0.420 3.580 21 O -0.477 6.477 22 C -0.154 4.154 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.279 0.721 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.684 2.335 -7.983 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 C -0.207 4.207 4 C -0.103 4.103 5 C 0.087 3.913 6 N -0.256 5.256 7 C -0.094 4.094 8 S 0.474 5.526 9 C -0.699 4.699 10 H 0.133 0.867 11 C -0.134 4.134 12 N -0.496 5.496 13 Si 0.760 3.240 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.188 1.188 17 N -0.248 5.248 18 C 0.048 3.952 19 C -0.368 4.368 20 C 0.299 3.701 21 O -0.355 6.355 22 C -0.191 4.191 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.117 0.883 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.966 2.153 -5.869 14.394 hybrid contribution 1.097 0.084 -2.291 2.542 sum -11.868 2.237 -8.160 14.576 Atomic orbital electron populations 1.21840 0.93164 1.02249 1.02336 1.20485 0.96115 0.95716 0.93250 1.22005 1.01769 0.94782 1.02192 1.20439 0.88805 1.02219 0.98795 1.21484 0.95740 0.86161 0.87872 1.68519 1.08157 1.19770 1.29136 1.26520 0.89703 0.92631 1.00531 1.83668 1.01413 1.72651 0.94872 1.23789 0.90506 1.56373 0.99245 0.86727 1.25249 1.00942 0.92853 0.94307 1.69885 1.34667 1.43467 1.01611 0.85878 0.80190 0.78712 0.79260 1.19682 1.20439 1.18824 1.69078 1.38979 1.18796 0.97973 1.23396 0.90668 0.84812 0.96359 1.21195 0.96882 1.22259 0.96418 1.22055 0.90661 0.70899 0.86521 1.90503 1.71315 1.38240 1.35438 1.22409 0.94472 1.02837 0.99416 0.91979 0.92155 0.92172 0.92298 0.92241 0.91912 0.88891 0.88766 0.91078 0.82003 0.88290 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.47 37.15 0.31 -0.69 16 2 C -0.05 -0.55 0.77 -154.46 -0.12 -0.67 16 3 C -0.15 -1.65 7.99 37.15 0.30 -1.35 16 4 C -0.06 -0.78 4.67 -28.26 -0.13 -0.92 16 5 C 0.24 4.17 6.17 -82.01 -0.51 3.67 16 6 N -0.54 -11.07 10.30 -9.40 -0.10 -11.17 16 7 C 0.27 6.29 7.84 -90.46 -0.71 5.58 16 8 S 0.22 5.54 21.83 -107.50 -2.35 3.19 16 9 C -0.55 -14.79 9.24 30.99 0.29 -14.50 16 10 H 0.11 3.12 6.48 -52.49 -0.34 2.78 16 11 C 0.08 2.03 5.49 -17.46 -0.10 1.93 16 12 N -0.86 -23.20 13.22 55.50 0.73 -22.46 16 13 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 17 N -0.53 -12.16 8.42 -13.00 -0.11 -12.27 16 18 C 0.22 4.40 10.90 -16.74 -0.18 4.22 16 19 C -0.35 -6.13 5.05 -104.99 -0.53 -6.66 16 20 C 0.42 6.39 5.70 -30.39 -0.17 6.21 16 21 O -0.48 -8.43 17.37 5.52 0.10 -8.34 16 22 C -0.15 -1.67 5.07 -27.24 -0.14 -1.80 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.81 6.04 -51.93 -0.31 0.50 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.16 2.85 7.82 -52.49 -0.41 2.44 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -29.73 301.31 -7.90 -37.63 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.00 Total: -1.39 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.69 Total: -4.99 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.53 Total: -45.90 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.10 Total: -8.34 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -2.35 Total: 3.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.73 -7.90 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000631020321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.701 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds