Wall clock time and date at job start Tue Mar 31 2020 00:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.46759 * 2 1 4 4 C 1.52689 * 109.46533 * 119.99051 * 2 1 3 5 5 C 1.50256 * 111.15054 * 174.32126 * 4 2 1 6 6 N 1.32119 * 119.89571 * 157.96912 * 5 4 2 7 7 C 1.32741 * 120.83095 * 180.02562 * 6 5 4 8 8 S 1.76201 * 118.85456 * 179.75995 * 7 6 5 9 9 C 1.76202 * 99.99800 * 179.75315 * 8 7 6 10 10 H 1.08002 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.38926 * 119.99826 * 180.02562 * 9 8 7 12 12 N 1.31461 * 120.00030 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99973 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47290 * 89.99710 * 13 11 9 15 15 H 1.48501 * 109.46851 * 209.99896 * 13 11 9 16 16 H 1.48506 * 109.46831 * 329.99326 * 13 11 9 17 17 N 1.32806 * 122.29311 * 359.50288 * 7 6 5 18 18 C 1.31996 * 120.74623 * 0.32157 * 17 7 6 19 19 C 1.40025 * 121.60055 * 337.69602 * 5 4 2 20 20 C 1.46888 * 120.31097 * 0.36347 * 19 5 4 21 21 O 1.21324 * 121.24584 * 168.61170 * 20 19 5 22 22 C 1.51562 * 117.51318 * 348.59508 * 20 19 5 23 23 H 1.09003 * 109.47107 * 300.01194 * 1 2 3 24 24 H 1.09003 * 109.47311 * 60.00878 * 1 2 3 25 25 H 1.09003 * 109.47691 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47398 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47369 * 299.98813 * 3 2 1 28 28 H 1.09001 * 109.46974 * 59.98798 * 3 2 1 29 29 H 1.09003 * 109.14512 * 53.89615 * 4 2 1 30 30 H 1.08996 * 109.14437 * 294.75271 * 4 2 1 31 31 H 0.96998 * 119.99811 * 180.02562 * 12 11 9 32 32 H 1.07991 * 120.70816 * 180.02562 * 18 17 7 33 33 H 1.09004 * 109.85662 * 283.05034 * 22 20 19 34 34 H 1.09002 * 109.91373 * 162.06717 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0387 -0.7196 1.2469 5 6 3.5342 -0.8629 1.2178 6 7 4.2002 -1.0457 2.3441 7 6 5.5214 -1.1741 2.3400 8 16 6.3575 -1.4095 3.8730 9 6 8.0202 -1.5216 3.3005 10 1 8.2346 -1.4400 2.2452 11 6 9.0552 -1.7161 4.2066 12 7 8.7941 -1.8159 5.4912 13 14 10.8178 -1.8357 3.5997 14 1 11.4259 -0.4812 3.5751 15 1 11.5968 -2.7117 4.5113 16 1 10.8318 -2.4096 2.2300 17 7 6.2345 -1.1363 1.2203 18 6 5.6467 -0.9605 0.0516 19 6 4.2528 -0.8136 0.0170 20 6 3.5526 -0.6101 -1.2581 21 8 4.1615 -0.3611 -2.2776 22 6 2.0413 -0.7231 -1.2528 23 1 -0.3633 0.5140 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.1298 1.4426 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6763 1.9563 0.8899 29 1 1.5858 -1.7097 1.2980 30 1 1.7514 -0.1500 2.1306 31 1 9.5168 -1.9513 6.1238 32 1 6.2271 -0.9303 -0.8586 33 1 1.7485 -1.7725 -1.2201 34 1 1.6306 -0.2519 -2.1459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000631020321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:04 Heat of formation + Delta-G solvation = -35.017877 kcal Electronic energy + Delta-G solvation = -18963.182669 eV Core-core repulsion = 15985.539704 eV Total energy + Delta-G solvation = -2977.642965 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.31655 -40.10243 -38.42391 -34.98299 -34.69754 -33.08199 -29.99977 -28.83902 -28.19054 -27.77790 -25.88454 -24.04713 -21.86913 -20.47243 -19.56051 -18.61163 -18.11756 -17.35624 -17.03178 -16.43597 -16.10391 -15.80385 -15.49039 -15.28015 -14.82945 -14.60020 -14.53186 -13.63677 -13.58221 -13.17051 -13.06443 -13.00402 -12.79703 -12.75878 -12.45572 -12.07950 -12.02639 -11.85144 -11.63083 -11.54241 -11.37311 -11.05773 -10.76287 -10.55327 -10.14363 -8.99537 -8.60623 -6.39451 -0.73600 0.20101 0.83820 1.26559 1.34981 1.38564 1.50397 2.06226 2.65114 2.78055 2.85437 3.07807 3.21308 3.43962 3.58506 3.74884 3.82775 3.87613 4.13411 4.29974 4.46411 4.59143 4.69839 4.77390 4.84709 4.93276 4.98014 5.01608 5.13239 5.21976 5.34812 5.37980 5.43640 5.54079 5.98595 6.20046 6.47722 6.86884 7.00217 8.48185 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.004564 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.732424 B = 6133.571202 C = 6770.480951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C -0.154 4.154 4 C -0.066 4.066 5 C 0.244 3.756 6 N -0.545 5.545 7 C 0.277 3.723 8 S 0.156 5.844 9 C -0.572 4.572 10 H 0.101 0.899 11 C 0.033 3.967 12 N -0.898 5.898 13 Si 0.999 3.001 14 H -0.265 1.265 15 H -0.266 1.266 16 H -0.267 1.267 17 N -0.559 5.559 18 C 0.203 3.797 19 C -0.336 4.336 20 C 0.423 3.577 21 O -0.498 6.498 22 C -0.145 4.145 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.284 0.716 32 H 0.177 0.823 33 H 0.127 0.873 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.645 2.509 -10.213 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 C -0.211 4.211 4 C -0.103 4.103 5 C 0.090 3.910 6 N -0.265 5.265 7 C -0.091 4.091 8 S 0.404 5.596 9 C -0.720 4.720 10 H 0.119 0.881 11 C -0.174 4.174 12 N -0.532 5.532 13 Si 0.820 3.180 14 H -0.190 1.190 15 H -0.190 1.190 16 H -0.191 1.191 17 N -0.278 5.278 18 C 0.030 3.970 19 C -0.350 4.350 20 C 0.303 3.697 21 O -0.376 6.376 22 C -0.182 4.182 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.145 0.855 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.004 2.348 -8.206 18.138 hybrid contribution 1.710 0.123 -1.921 2.575 sum -14.294 2.471 -10.127 17.692 Atomic orbital electron populations 1.21809 0.89915 1.03755 1.03489 1.20498 0.98391 0.94322 0.91468 1.22058 0.99360 0.96086 1.03567 1.20739 0.84662 1.04317 1.00599 1.22439 0.98270 0.83806 0.86477 1.68594 1.07056 1.19970 1.30847 1.26238 0.90612 0.92436 0.99796 1.83557 1.01801 1.77238 0.97021 1.23778 0.91441 1.58103 0.98710 0.88120 1.26101 1.04604 0.92298 0.94386 1.69960 1.35843 1.44888 1.02515 0.84944 0.75467 0.79013 0.78585 1.19000 1.19035 1.19106 1.69019 1.40214 1.19730 0.98878 1.23795 0.92291 0.84965 0.95905 1.21750 0.96221 1.18576 0.98458 1.22618 0.92970 0.69478 0.84652 1.90512 1.72495 1.38840 1.35800 1.22500 0.89839 1.04984 1.00881 0.91264 0.90731 0.90533 0.95906 0.90578 0.91072 0.86071 0.87865 0.90684 0.80595 0.85540 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.47 71.98 0.61 -0.51 16 2 C -0.05 -0.70 0.77 -52.15 -0.04 -0.74 16 3 C -0.15 -2.84 7.99 71.98 0.58 -2.27 16 4 C -0.07 -1.34 4.67 29.61 0.14 -1.20 16 5 C 0.24 7.93 6.17 42.81 0.26 8.19 16 6 N -0.54 -22.54 10.30 -183.66 -1.89 -24.43 16 7 C 0.28 13.33 7.84 180.29 1.41 14.75 16 8 S 0.16 8.26 21.83 -56.49 -1.23 7.03 16 9 C -0.57 -32.40 9.24 67.98 0.63 -31.77 16 10 H 0.10 5.79 6.48 -2.91 -0.02 5.77 16 11 C 0.03 1.81 5.49 84.91 0.47 2.28 16 12 N -0.90 -50.22 13.22 21.66 0.29 -49.94 16 13 Si 1.00 42.78 29.55 68.60 2.03 44.81 16 14 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 N -0.56 -26.57 8.42 -195.05 -1.64 -28.22 16 18 C 0.20 8.03 10.90 85.15 0.93 8.96 16 19 C -0.34 -11.26 5.05 -20.10 -0.10 -11.36 16 20 C 0.42 11.66 5.70 28.23 0.16 11.82 16 21 O -0.50 -16.47 17.37 -3.17 -0.05 -16.52 16 22 C -0.14 -2.40 5.07 30.26 0.15 -2.24 16 23 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 26 H 0.02 0.57 6.04 -2.39 -0.01 0.56 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.12 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.18 6.26 7.82 -2.92 -0.02 6.23 16 33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.97 301.31 3.81 -65.16 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.12 Total: 6.21 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 5.20 Total: -4.10 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -3.25 Total: -102.58 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 8.26 SS G_CDS: -1.23 Total: 7.03 kcal Total: -68.97 3.81 -65.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000631020321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.144 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds