Wall clock time and date at job start Tue Mar 31 2020 00:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47135 * 269.99528 * 3 2 1 5 5 H 1.48496 * 109.47616 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.47212 * 149.99998 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99786 * 197.84555 * 7 2 1 9 9 C 1.41441 * 120.00330 * 17.85009 * 7 2 1 10 10 C 1.40794 * 120.17490 * 204.39501 * 9 7 2 11 11 C 1.37714 * 120.04690 * 180.02562 * 10 9 7 12 12 C 1.38356 * 120.42007 * 359.97438 * 11 10 9 13 13 C 1.39926 * 120.35732 * 0.02562 * 12 11 10 14 14 C 1.47762 * 120.03394 * 180.02562 * 13 12 11 15 15 O 1.21473 * 120.00104 * 179.97438 * 14 13 12 16 16 O 1.34702 * 120.00129 * 359.97295 * 14 13 12 17 17 C 1.45203 * 117.00121 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47186 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47315 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47138 * 179.97438 * 19 18 17 21 21 O 1.20825 * 120.00228 * 0.02562 * 20 19 18 22 22 O 1.34226 * 119.99889 * 180.02562 * 20 19 18 23 23 C 1.39087 * 119.93599 * 0.02562 * 13 12 11 24 24 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.97520 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.79192 * 179.97438 * 11 10 9 27 27 H 1.08007 * 119.82062 * 180.02562 * 12 11 10 28 28 H 1.09004 * 109.46958 * 300.00141 * 17 16 14 29 29 H 1.08996 * 109.47258 * 60.00096 * 17 16 14 30 30 H 1.08995 * 109.47098 * 300.00117 * 18 17 16 31 31 H 1.09004 * 109.46945 * 59.99975 * 18 17 16 32 32 H 1.09004 * 109.46993 * 299.99942 * 19 18 17 33 33 H 1.08996 * 109.47095 * 59.99819 * 19 18 17 34 34 H 0.96707 * 117.00198 * 180.02562 * 22 20 19 35 35 H 1.07996 * 120.20704 * 179.72484 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3517 -2.4075 -0.3744 10 6 1.8269 -3.6501 0.0867 11 6 1.1863 -4.8126 -0.2804 12 6 0.0740 -4.7701 -1.1021 13 6 -0.4129 -3.5447 -1.5703 14 6 -1.6017 -3.5075 -2.4471 15 8 -2.0242 -2.4434 -2.8529 16 8 -2.2170 -4.6538 -2.7965 17 6 -3.3785 -4.5416 -3.6606 18 6 -3.9384 -5.9366 -3.9461 19 6 -5.1626 -5.8184 -4.8561 20 6 -5.7137 -7.1924 -5.1378 21 8 -5.1822 -8.1663 -4.6594 22 8 -6.7951 -7.3344 -5.9202 23 6 0.2232 -2.3615 -1.2097 24 1 -0.4850 0.8400 -0.0004 25 1 2.6942 -3.6915 0.7288 26 1 1.5545 -5.7635 0.0754 27 1 -0.4212 -5.6877 -1.3836 28 1 -4.1410 -3.9382 -3.1679 29 1 -3.0893 -4.0669 -4.5982 30 1 -3.1761 -6.5403 -4.4385 31 1 -4.2277 -6.4109 -3.0083 32 1 -5.9248 -5.2148 -4.3632 33 1 -4.8738 -5.3439 -5.7939 34 1 -7.1121 -8.2353 -6.0718 35 1 -0.1462 -1.4137 -1.5721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738425039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:11 Heat of formation + Delta-G solvation = -195.275218 kcal Electronic energy + Delta-G solvation = -20184.957740 eV Core-core repulsion = 16725.319873 eV Total energy + Delta-G solvation = -3459.637867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48820 -41.19236 -39.21576 -37.65604 -37.13584 -35.63485 -34.93578 -32.21180 -31.36344 -29.04456 -27.25857 -25.19389 -23.56616 -22.84109 -21.84658 -21.37480 -19.61906 -19.08487 -18.27120 -17.78750 -17.77646 -17.29471 -17.00326 -16.62263 -16.41419 -15.43685 -15.24765 -15.07816 -14.46442 -14.30172 -13.89707 -13.86597 -13.50007 -13.47097 -12.99575 -12.83519 -12.57490 -12.54816 -12.45136 -12.27455 -12.20601 -12.01305 -11.66909 -11.54205 -11.49752 -11.27770 -11.09656 -9.61886 -9.44774 -8.68632 -6.39697 0.13200 0.96648 1.21128 1.38560 1.47082 1.52759 1.56668 1.80586 2.19652 2.25846 2.72218 3.62887 3.70275 3.82478 3.83666 4.10810 4.32961 4.34390 4.42271 4.51097 4.63422 4.67490 4.84242 4.94698 5.04104 5.06830 5.13502 5.28317 5.35337 5.45339 5.63689 5.81829 5.89713 6.01178 6.22854 6.53039 6.81668 6.86868 6.89043 6.99607 8.29046 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.032097 B = 0.003139 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.147222 B = 8918.588765 C = 9695.254869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.493 4.493 8 H 0.087 0.913 9 C 0.065 3.935 10 C -0.204 4.204 11 C -0.100 4.100 12 C -0.182 4.182 13 C -0.130 4.130 14 C 0.517 3.483 15 O -0.544 6.544 16 O -0.352 6.352 17 C 0.059 3.941 18 C -0.100 4.100 19 C -0.107 4.107 20 C 0.487 3.513 21 O -0.555 6.555 22 O -0.512 6.512 23 C -0.123 4.123 24 H 0.288 0.712 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.428 0.572 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 -8.920 -8.835 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.522 4.522 8 H 0.105 0.895 9 C 0.063 3.937 10 C -0.224 4.224 11 C -0.117 4.117 12 C -0.202 4.202 13 C -0.131 4.131 14 C 0.365 3.635 15 O -0.436 6.436 16 O -0.269 6.269 17 C -0.015 4.015 18 C -0.138 4.138 19 C -0.144 4.144 20 C 0.332 3.668 21 O -0.446 6.446 22 O -0.326 6.326 23 C -0.143 4.143 24 H 0.099 0.901 25 H 0.133 0.867 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.290 0.710 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.835 -8.354 -8.767 15.601 hybrid contribution -0.125 0.310 -0.051 0.338 sum -9.961 -8.044 -8.818 15.546 Atomic orbital electron populations 1.69869 1.09243 1.30803 1.35185 1.26864 0.95436 1.04988 0.91227 0.85155 0.79225 0.75668 0.79426 1.19014 1.19440 1.17442 1.19868 0.98715 0.91943 1.41719 0.89460 1.17919 0.91699 0.94070 0.90048 1.21501 1.03581 0.92541 1.04742 1.20959 0.95268 0.98063 0.97454 1.20958 0.99846 0.95430 1.03931 1.19102 0.95572 0.96066 1.02364 1.21610 0.82799 0.81304 0.77795 1.90737 1.65946 1.32361 1.54563 1.86537 1.43114 1.34124 1.63160 1.23217 0.85371 0.99155 0.93736 1.21231 0.97138 0.94334 1.01095 1.21209 0.98103 0.91378 1.03717 1.23559 0.77082 0.92377 0.73801 1.90756 1.60109 1.43049 1.50705 1.84493 1.43840 1.40390 1.63881 1.21467 0.98172 0.95863 0.98763 0.90104 0.86686 0.84241 0.85114 0.90574 0.90293 0.90391 0.90562 0.84903 0.84795 0.71001 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.72 10.96 21.82 0.24 -44.49 16 2 C 0.03 1.52 5.14 85.25 0.44 1.96 16 3 Si 0.98 38.48 29.59 68.60 2.03 40.51 16 4 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.49 -26.20 9.05 23.47 0.21 -25.98 16 8 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 9 C 0.06 3.47 5.57 -21.32 -0.12 3.35 16 10 C -0.20 -9.45 9.78 22.77 0.22 -9.23 16 11 C -0.10 -4.06 10.01 22.17 0.22 -3.84 16 12 C -0.18 -7.73 9.62 22.71 0.22 -7.51 16 13 C -0.13 -6.30 5.87 -20.15 -0.12 -6.42 16 14 C 0.52 23.17 7.90 70.34 0.56 23.72 16 15 O -0.54 -26.72 16.12 19.93 0.32 -26.40 16 16 O -0.35 -12.70 9.46 -56.11 -0.53 -13.23 16 17 C 0.06 1.52 5.48 71.98 0.39 1.92 16 18 C -0.10 -2.01 4.88 30.60 0.15 -1.86 16 19 C -0.11 -1.38 5.81 29.85 0.17 -1.21 16 20 C 0.49 7.91 8.33 71.23 0.59 8.50 16 21 O -0.56 -13.56 16.74 21.97 0.37 -13.19 16 22 O -0.51 -5.56 13.42 -51.38 -0.69 -6.25 16 23 C -0.12 -6.73 8.23 23.02 0.19 -6.54 16 24 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 25 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 26 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 27 H 0.13 4.81 7.59 -2.91 -0.02 4.79 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 32 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.43 1.35 9.10 -74.05 -0.67 0.67 16 35 H 0.11 6.39 5.75 -2.91 -0.02 6.37 16 Total: -1.00 -70.56 316.80 5.32 -65.24 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.45 Total: 20.93 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.13 Total: -23.12 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.24 Total: -44.49 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -0.53 Total: -59.08 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -70.56 5.32 -65.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.035 kcal (2) G-P(sol) polarization free energy of solvation -70.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds