Wall clock time and date at job start Tue Mar 31 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47051 * 90.00191 * 3 2 1 5 5 H 1.48500 * 109.47071 * 210.00211 * 3 2 1 6 6 H 1.48504 * 109.46997 * 330.00317 * 3 2 1 7 7 C 1.40294 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 159.68560 * 7 2 1 9 9 C 1.40861 * 120.00053 * 339.67310 * 7 2 1 10 10 C 1.40703 * 120.33362 * 325.74709 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46867 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46721 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47152 * 180.02562 * 20 19 18 22 22 O 1.20831 * 119.99749 * 359.97438 * 21 20 19 23 23 O 1.34222 * 120.00342 * 180.02562 * 21 20 19 24 24 H 0.97001 * 119.99911 * 175.29351 * 1 2 3 25 25 H 1.07997 * 120.05864 * 359.95450 * 10 9 7 26 26 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 28 28 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 29 29 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 30 30 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 31 31 H 1.08999 * 109.47037 * 299.99623 * 19 18 17 32 32 H 1.09002 * 109.47003 * 59.99669 * 19 18 17 33 33 H 1.09003 * 109.47602 * 299.99611 * 20 19 18 34 34 H 1.09002 * 109.47577 * 60.00113 * 20 19 18 35 35 H 0.96701 * 117.00267 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4876 2.0464 1.4001 5 1 3.5376 1.4402 -0.7001 6 1 1.4375 2.6527 -0.7000 7 6 2.0076 -1.2150 -0.0005 8 1 3.0372 -1.2440 -0.3253 9 6 1.3691 -2.3971 0.4227 10 6 0.4104 -2.3575 1.4518 11 6 -0.2081 -3.5178 1.8576 12 6 0.1054 -4.7315 1.2607 13 6 1.0441 -4.7979 0.2485 14 6 1.6838 -3.6399 -0.1877 15 6 2.6805 -3.7048 -1.2702 16 8 3.1664 -2.6817 -1.7107 17 8 3.0538 -4.8989 -1.7721 18 6 4.0409 -4.8869 -2.8369 19 6 4.3367 -6.3230 -3.2742 20 6 5.3763 -6.3103 -4.3967 21 6 5.6673 -7.7246 -4.8279 22 8 5.1015 -8.6481 -4.2920 23 8 6.5556 -7.9586 -5.8065 24 1 -0.4850 -0.8372 -0.0689 25 1 0.1606 -1.4182 1.9226 26 1 -0.9432 -3.4841 2.6481 27 1 -0.3889 -5.6330 1.5912 28 1 1.2787 -5.7482 -0.2079 29 1 3.6541 -4.3210 -3.6844 30 1 4.9581 -4.4209 -2.4769 31 1 4.7236 -6.8885 -2.4265 32 1 3.4196 -6.7895 -3.6340 33 1 4.9890 -5.7449 -5.2443 34 1 6.2935 -5.8437 -4.0373 35 1 6.7093 -8.8822 -6.0483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738425172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:56 Heat of formation + Delta-G solvation = -179.513045 kcal Electronic energy + Delta-G solvation = -20568.872434 eV Core-core repulsion = 17109.918065 eV Total energy + Delta-G solvation = -3458.954368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.50454 -39.45413 -37.56142 -36.51639 -35.62412 -34.10487 -33.71348 -30.24585 -29.48552 -27.90341 -25.41498 -23.44775 -22.25902 -21.07018 -20.89830 -19.81852 -18.34263 -18.03375 -16.97282 -16.67260 -16.52914 -15.71391 -15.56052 -14.78132 -14.31018 -14.08093 -13.97562 -13.57911 -13.25082 -12.74970 -12.50011 -12.48295 -12.23771 -11.93168 -11.78827 -11.31772 -11.19378 -11.14035 -10.95667 -10.85379 -10.75975 -10.44587 -10.24399 -9.94972 -9.77032 -9.16342 -8.90963 -7.88201 -7.70507 -7.28870 -4.60023 1.94175 2.07048 2.66445 2.69426 3.13952 3.25089 3.35232 3.55603 3.76679 3.96034 4.52067 4.59001 4.72344 4.92596 5.26859 5.28778 5.32984 5.35943 5.55568 5.93880 5.95971 5.99522 6.09095 6.18776 6.24002 6.46894 6.70431 6.90145 7.15618 7.29406 7.45034 7.53907 7.61019 7.69837 7.78814 8.03245 8.11593 8.58889 8.71090 8.99553 9.92046 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.003904 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.613843 B = 7169.595495 C = 8389.945615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.032 3.968 3 Si 1.074 2.926 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.122 3.878 10 C -0.201 4.201 11 C -0.070 4.070 12 C -0.261 4.261 13 C -0.023 4.023 14 C -0.255 4.255 15 C 0.504 3.496 16 O -0.515 6.515 17 O -0.369 6.369 18 C 0.070 3.930 19 C -0.110 4.110 20 C -0.111 4.111 21 C 0.480 3.520 22 O -0.513 6.513 23 O -0.519 6.519 24 H 0.300 0.700 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -8.324 -6.914 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.191 4.191 3 Si 0.896 3.104 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.123 0.877 9 C 0.118 3.882 10 C -0.220 4.220 11 C -0.089 4.089 12 C -0.280 4.280 13 C -0.041 4.041 14 C -0.258 4.258 15 C 0.355 3.645 16 O -0.405 6.405 17 O -0.288 6.288 18 C -0.005 4.005 19 C -0.147 4.147 20 C -0.149 4.149 21 C 0.323 3.677 22 O -0.400 6.400 23 O -0.331 6.331 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.956 -6.221 -6.774 12.161 hybrid contribution 0.262 -2.397 -0.301 2.430 sum 8.219 -8.619 -7.076 13.852 Atomic orbital electron populations 1.70361 1.08261 1.34488 1.27691 1.27321 0.95666 1.04761 0.91336 0.83507 0.75700 0.72981 0.78167 1.19890 1.19703 1.19989 1.21230 1.01911 0.92181 1.33908 0.87748 1.17469 0.89817 0.91602 0.89354 1.21202 1.03170 0.97299 1.00355 1.20812 0.97274 0.93150 0.97632 1.20340 1.06286 0.96772 1.04595 1.20922 0.93118 0.96161 0.93911 1.18680 1.07967 0.95737 1.03395 1.21321 0.81214 0.80080 0.81906 1.90738 1.54843 1.34624 1.60334 1.86568 1.56465 1.35610 1.50138 1.22654 0.91802 0.96148 0.89853 1.21330 0.99155 0.96527 0.97729 1.21225 1.02314 0.90462 1.00861 1.23468 0.75359 0.92847 0.76072 1.90756 1.48949 1.46522 1.53820 1.84538 1.58937 1.36765 1.52902 0.88616 0.87306 0.88603 0.88538 0.87729 0.91656 0.91674 0.89908 0.89916 0.87125 0.87124 0.73152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 12.60 55.57 0.70 -19.81 16 2 C 0.03 0.80 5.01 -17.30 -0.09 0.72 16 3 Si 1.07 21.79 29.98 -169.99 -5.10 16.69 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.47 -12.52 7.62 -37.82 -0.29 -12.81 16 8 H 0.10 2.91 5.99 -52.49 -0.31 2.59 16 9 C 0.12 3.21 5.16 -106.54 -0.55 2.66 16 10 C -0.20 -4.94 7.90 -38.88 -0.31 -5.24 16 11 C -0.07 -1.53 10.01 -39.59 -0.40 -1.93 16 12 C -0.26 -5.55 10.03 -39.37 -0.39 -5.94 16 13 C -0.02 -0.51 9.60 -39.20 -0.38 -0.88 16 14 C -0.25 -6.36 5.92 -104.39 -0.62 -6.98 16 15 C 0.50 12.05 7.85 34.41 0.27 12.32 16 16 O -0.51 -13.27 13.38 -19.28 -0.26 -13.53 16 17 O -0.37 -7.37 9.48 -40.78 -0.39 -7.75 16 18 C 0.07 1.06 5.48 37.16 0.20 1.27 16 19 C -0.11 -1.31 4.88 -26.73 -0.13 -1.44 16 20 C -0.11 -0.97 5.81 -27.89 -0.16 -1.13 16 21 C 0.48 4.73 8.33 36.01 0.30 5.03 16 22 O -0.51 -6.87 16.74 -18.75 -0.31 -7.19 16 23 O -0.52 -3.79 13.42 -39.24 -0.53 -4.31 16 24 H 0.30 8.03 6.62 -40.82 -0.27 7.76 16 25 H 0.11 2.69 6.99 -52.49 -0.37 2.32 16 26 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.10 2.10 7.61 -52.49 -0.40 1.70 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.41 1.33 9.10 45.56 0.41 1.74 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -31.77 311.72 -6.83 -38.60 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.11 Total: 6.97 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.54 Total: -14.36 kcal Atomic # 7 Polarization: -20.51 SS G_CDS: 0.70 Total: -19.81 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.49 Total: -32.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.10 Total: 16.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.77 -6.83 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.915 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds