Wall clock time and date at job start Tue Mar 31 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47051 * 90.00191 * 3 2 1 5 5 H 1.48500 * 109.47071 * 210.00211 * 3 2 1 6 6 H 1.48504 * 109.46997 * 330.00317 * 3 2 1 7 7 C 1.40294 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 159.68560 * 7 2 1 9 9 C 1.40861 * 120.00053 * 339.67310 * 7 2 1 10 10 C 1.40703 * 120.33362 * 325.74709 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46867 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46721 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47152 * 180.02562 * 20 19 18 22 22 O 1.20831 * 119.99749 * 359.97438 * 21 20 19 23 23 O 1.34222 * 120.00342 * 180.02562 * 21 20 19 24 24 H 0.97001 * 119.99911 * 175.29351 * 1 2 3 25 25 H 1.07997 * 120.05864 * 359.95450 * 10 9 7 26 26 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 28 28 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 29 29 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 30 30 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 31 31 H 1.08999 * 109.47037 * 299.99623 * 19 18 17 32 32 H 1.09002 * 109.47003 * 59.99669 * 19 18 17 33 33 H 1.09003 * 109.47602 * 299.99611 * 20 19 18 34 34 H 1.09002 * 109.47577 * 60.00113 * 20 19 18 35 35 H 0.96701 * 117.00267 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4876 2.0464 1.4001 5 1 3.5376 1.4402 -0.7001 6 1 1.4375 2.6527 -0.7000 7 6 2.0076 -1.2150 -0.0005 8 1 3.0372 -1.2440 -0.3253 9 6 1.3691 -2.3971 0.4227 10 6 0.4104 -2.3575 1.4518 11 6 -0.2081 -3.5178 1.8576 12 6 0.1054 -4.7315 1.2607 13 6 1.0441 -4.7979 0.2485 14 6 1.6838 -3.6399 -0.1877 15 6 2.6805 -3.7048 -1.2702 16 8 3.1664 -2.6817 -1.7107 17 8 3.0538 -4.8989 -1.7721 18 6 4.0409 -4.8869 -2.8369 19 6 4.3367 -6.3230 -3.2742 20 6 5.3763 -6.3103 -4.3967 21 6 5.6673 -7.7246 -4.8279 22 8 5.1015 -8.6481 -4.2920 23 8 6.5556 -7.9586 -5.8065 24 1 -0.4850 -0.8372 -0.0689 25 1 0.1606 -1.4182 1.9226 26 1 -0.9432 -3.4841 2.6481 27 1 -0.3889 -5.6330 1.5912 28 1 1.2787 -5.7482 -0.2079 29 1 3.6541 -4.3210 -3.6844 30 1 4.9581 -4.4209 -2.4769 31 1 4.7236 -6.8885 -2.4265 32 1 3.4196 -6.7895 -3.6340 33 1 4.9890 -5.7449 -5.2443 34 1 6.2935 -5.8437 -4.0373 35 1 6.7093 -8.8822 -6.0483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738425172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:56 Heat of formation + Delta-G solvation = -198.559245 kcal Electronic energy + Delta-G solvation = -20569.698339 eV Core-core repulsion = 17109.918065 eV Total energy + Delta-G solvation = -3459.780273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35840 -41.13379 -39.32903 -37.44817 -37.09796 -35.87796 -34.89178 -32.04921 -31.32596 -29.00882 -27.25701 -24.93043 -23.60246 -22.87835 -21.85704 -21.45739 -19.91467 -19.08319 -18.47569 -17.76863 -17.70156 -17.05930 -16.94918 -16.55830 -16.01400 -15.64640 -15.34613 -15.06655 -14.54609 -14.24441 -14.01580 -13.78703 -13.53380 -13.46701 -12.99232 -12.73955 -12.56466 -12.55232 -12.36995 -12.22780 -12.09242 -11.97107 -11.68628 -11.57375 -11.41477 -10.99487 -10.77175 -9.73559 -9.57836 -9.22219 -6.57064 0.21621 0.87025 1.19312 1.48098 1.62668 1.72116 1.78606 1.92482 2.28989 2.31468 2.66061 3.45333 3.73114 3.83246 3.90857 4.24216 4.28602 4.33005 4.35371 4.43505 4.53484 4.65431 4.77100 4.87793 4.93901 5.03818 5.09387 5.35592 5.50844 5.60070 5.62656 5.67720 5.81261 5.91226 6.14354 6.25684 6.68057 6.77604 6.98367 7.18042 7.95991 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.003904 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.613843 B = 7169.595495 C = 8389.945615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.001 3.999 3 Si 1.119 2.881 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.223 4.223 11 C -0.062 4.062 12 C -0.247 4.247 13 C -0.027 4.027 14 C -0.280 4.280 15 C 0.504 3.496 16 O -0.542 6.542 17 O -0.368 6.368 18 C 0.063 3.937 19 C -0.098 4.098 20 C -0.107 4.107 21 C 0.489 3.511 22 O -0.555 6.555 23 O -0.511 6.511 24 H 0.285 0.715 25 H 0.098 0.902 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -9.519 -7.123 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.216 4.216 3 Si 0.936 3.064 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.102 0.898 9 C 0.096 3.904 10 C -0.242 4.242 11 C -0.081 4.081 12 C -0.266 4.266 13 C -0.045 4.045 14 C -0.283 4.283 15 C 0.356 3.644 16 O -0.435 6.435 17 O -0.286 6.286 18 C -0.011 4.011 19 C -0.136 4.136 20 C -0.144 4.144 21 C 0.333 3.667 22 O -0.446 6.446 23 O -0.325 6.325 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.149 0.851 27 H 0.155 0.845 28 H 0.146 0.854 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 8.396 -7.465 -6.999 13.236 hybrid contribution 0.158 -2.313 -0.289 2.337 sum 8.554 -9.778 -7.288 14.896 Atomic orbital electron populations 1.70470 1.08669 1.33360 1.30328 1.28569 0.95757 1.07423 0.89884 0.82970 0.74556 0.69600 0.79270 1.17866 1.19569 1.19103 1.21198 1.01482 0.93669 1.36862 0.89794 1.17842 0.90466 0.92244 0.89825 1.21207 1.04160 0.98104 1.00716 1.21231 0.96778 0.92356 0.97726 1.20848 1.04841 0.97937 1.02953 1.21231 0.92881 0.96212 0.94184 1.19081 1.08789 0.96386 1.04006 1.21281 0.80825 0.80647 0.81690 1.90715 1.55776 1.35834 1.61155 1.86519 1.57440 1.33399 1.51286 1.23044 0.90822 0.98598 0.88590 1.21211 0.99921 0.93792 0.98661 1.21207 1.02302 0.90491 1.00414 1.23526 0.74833 0.92606 0.75748 1.90752 1.50683 1.47772 1.55407 1.84492 1.57745 1.38570 1.51700 0.90231 0.88434 0.85078 0.84532 0.85383 0.91229 0.91067 0.90604 0.90691 0.85005 0.84917 0.70978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.40 12.60 21.88 0.28 -43.12 16 2 C 0.00 0.03 5.01 85.37 0.43 0.46 16 3 Si 1.12 44.73 29.98 68.60 2.06 46.79 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.51 -28.31 7.62 23.41 0.18 -28.13 16 8 H 0.08 4.93 5.99 -2.91 -0.02 4.91 16 9 C 0.10 5.41 5.16 -21.10 -0.11 5.30 16 10 C -0.22 -11.03 7.90 22.72 0.18 -10.85 16 11 C -0.06 -2.60 10.01 22.26 0.22 -2.38 16 12 C -0.25 -9.72 10.03 22.41 0.22 -9.50 16 13 C -0.03 -1.15 9.60 22.52 0.22 -0.93 16 14 C -0.28 -14.08 5.92 -19.71 -0.12 -14.20 16 15 C 0.50 24.48 7.85 70.20 0.55 25.04 16 16 O -0.54 -28.80 13.38 19.75 0.26 -28.54 16 17 O -0.37 -14.59 9.48 -57.15 -0.54 -15.13 16 18 C 0.06 1.87 5.48 71.98 0.39 2.26 16 19 C -0.10 -2.22 4.88 30.59 0.15 -2.07 16 20 C -0.11 -1.61 5.81 29.85 0.17 -1.44 16 21 C 0.49 8.64 8.33 71.24 0.59 9.23 16 22 O -0.55 -14.27 16.74 21.95 0.37 -13.91 16 23 O -0.51 -6.13 13.42 -51.34 -0.69 -6.81 16 24 H 0.29 15.89 6.62 -92.71 -0.61 15.28 16 25 H 0.10 4.96 6.99 -2.91 -0.02 4.94 16 26 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 28 H 0.13 4.82 7.61 -2.91 -0.02 4.80 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.43 1.73 9.10 -74.06 -0.67 1.05 16 Total: -1.00 -71.06 311.72 5.43 -65.63 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.61 Total: 22.30 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.09 Total: -27.21 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.28 Total: -43.12 kcal Atomic # 8 Polarization: -63.79 SS G_CDS: -0.60 Total: -64.39 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.06 Total: 46.79 kcal Total: -71.06 5.43 -65.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.927 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds