Wall clock time and date at job start Tue Mar 31 2020 00:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86799 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47193 * 240.00044 * 3 2 1 5 5 H 1.48501 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47261 * 119.99656 * 3 2 1 7 7 C 1.38625 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00290 * 179.97438 * 7 2 1 9 9 O 1.34806 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.35789 * 117.00236 * 185.06433 * 9 7 2 11 11 C 1.38732 * 120.08501 * 354.39746 * 10 9 7 12 12 C 1.38359 * 119.97740 * 179.97438 * 11 10 9 13 13 F 1.35101 * 119.91827 * 180.02562 * 12 11 10 14 14 C 1.38529 * 120.15915 * 0.02562 * 12 11 10 15 15 C 1.38207 * 120.17940 * 0.02562 * 14 12 11 16 16 C 1.38720 * 120.01459 * 0.23006 * 15 14 12 17 17 N 1.39925 * 120.07752 * 179.74295 * 16 15 14 18 18 C 1.46502 * 120.00021 * 359.97438 * 17 16 15 19 19 C 1.50706 * 109.47064 * 180.02562 * 18 17 16 20 20 C 1.41377 * 126.80444 * 94.99755 * 19 18 17 21 21 C 1.35447 * 103.98639 * 179.97438 * 20 19 18 22 22 O 1.34034 * 106.44640 * 0.02562 * 21 20 19 23 23 N 1.20924 * 111.57036 * 359.70890 * 22 21 20 24 24 H 0.97000 * 120.00127 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00897 * 0.02562 * 11 10 9 26 26 H 1.08003 * 119.90995 * 180.02562 * 14 12 11 27 27 H 1.08001 * 119.99575 * 179.97438 * 15 14 12 28 28 H 0.97005 * 120.00206 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.47520 * 300.00029 * 18 17 16 30 30 H 1.09004 * 109.46979 * 60.00199 * 18 17 16 31 31 H 1.08001 * 128.00508 * 0.04536 * 20 19 18 32 32 H 1.08001 * 126.77729 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0704 -3.5044 0.1079 11 6 3.4562 -3.4399 0.0942 12 6 4.2033 -4.5992 0.2043 13 9 5.5527 -4.5349 0.1914 14 6 3.5711 -5.8256 0.3277 15 6 2.1910 -5.8976 0.3409 16 6 1.4346 -4.7404 0.2257 17 7 0.0372 -4.8123 0.2336 18 6 -0.6287 -6.1107 0.3630 19 6 -2.1227 -5.9132 0.3435 20 6 -2.9754 -6.0113 -0.7799 21 6 -4.2070 -5.7512 -0.2797 22 8 -4.0440 -5.5244 1.0312 23 7 -2.8843 -5.6237 1.3588 24 1 -0.4850 0.8400 0.0004 25 1 3.9515 -2.4850 -0.0014 26 1 4.1583 -6.7280 0.4137 27 1 1.7011 -6.8553 0.4368 28 1 -0.4906 -4.0024 0.1526 29 1 -0.3367 -6.7533 -0.4676 30 1 -0.3358 -6.5772 1.3037 31 1 -2.7070 -6.2415 -1.8004 32 1 -5.1366 -5.7299 -0.8290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760465289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:15 Heat of formation + Delta-G solvation = 24.210541 kcal Electronic energy + Delta-G solvation = -20538.623908 eV Core-core repulsion = 16997.336104 eV Total energy + Delta-G solvation = -3541.287804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.07103 -44.97093 -39.23108 -36.80353 -35.49639 -33.34603 -32.31111 -31.68088 -29.29779 -28.72576 -25.77620 -25.41221 -23.18596 -22.14071 -21.23071 -20.74949 -18.21182 -18.04154 -17.62474 -17.40101 -16.22212 -15.82913 -15.17327 -15.01509 -14.83479 -14.29042 -14.14981 -14.04538 -13.59527 -13.49788 -13.22563 -13.00631 -12.43487 -12.09677 -11.94895 -11.51234 -11.48023 -11.20592 -10.83400 -10.60916 -10.46983 -10.23992 -9.70036 -9.59746 -9.32046 -8.86864 -7.77358 -6.51784 -6.48634 -4.05276 1.47728 2.08665 2.11287 2.20875 3.12341 3.13756 3.15982 3.23217 3.91902 4.01204 4.20192 4.43110 4.53513 4.94440 5.06860 5.10174 5.24940 5.28849 5.32752 5.54672 5.61433 5.78588 5.80796 5.94785 6.07076 6.37578 6.54594 6.77443 6.99203 7.07372 7.22518 7.57040 7.87940 7.97902 8.23891 8.30885 8.96496 9.61833 10.68086 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.006052 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.134091 B = 4625.080428 C = 6794.332086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.388 4.388 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.124 3.876 11 C -0.241 4.241 12 C 0.089 3.911 13 F -0.157 7.157 14 C -0.196 4.196 15 C -0.144 4.144 16 C 0.152 3.848 17 N -0.741 5.741 18 C 0.213 3.787 19 C 0.003 3.997 20 C -0.219 4.219 21 C -0.065 4.065 22 O 0.105 5.895 23 N -0.347 5.347 24 H 0.270 0.730 25 H 0.139 0.861 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.411 0.589 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.173 0.827 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 -11.252 -2.164 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.068 3.932 11 C -0.262 4.262 12 C 0.068 3.932 13 F -0.136 7.136 14 C -0.216 4.216 15 C -0.168 4.168 16 C 0.051 3.949 17 N -0.377 5.377 18 C 0.088 3.912 19 C -0.156 4.156 20 C -0.241 4.241 21 C -0.146 4.146 22 O 0.035 5.965 23 N -0.048 5.048 24 H 0.080 0.920 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.247 0.753 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.190 0.810 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.283 -10.995 -0.854 12.229 hybrid contribution 0.571 1.001 -1.017 1.537 sum -4.712 -9.995 -1.871 11.207 Atomic orbital electron populations 1.70019 1.05898 1.27836 1.46019 1.25257 0.95867 0.98763 0.96503 0.85777 0.78709 0.79683 0.79296 1.19450 1.20292 1.19447 1.21253 0.91823 0.80581 1.52733 0.89082 1.83895 1.33726 1.11127 1.79185 1.18577 0.89438 0.87142 0.98022 1.20790 0.93376 0.98285 1.13797 1.17238 0.75892 0.94286 1.05785 1.91382 1.30241 1.97381 1.94591 1.20282 0.94314 0.95632 1.11395 1.19925 0.92656 0.95664 1.08591 1.17042 0.83132 0.91315 1.03396 1.44201 1.02633 1.07240 1.83661 1.19313 0.82367 0.87592 1.01938 1.23659 0.98696 1.03781 0.89475 1.22774 0.92007 1.07924 1.01380 1.26015 1.01352 1.02603 0.84618 1.84858 1.22198 1.64788 1.24661 1.73912 0.89881 1.16815 1.24222 0.91973 0.84377 0.86433 0.86104 0.75318 0.90603 0.91200 0.80957 0.76684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.68 9.49 30.88 0.29 -10.38 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 9 O -0.18 -4.80 9.00 -0.01 0.00 -4.80 16 10 C 0.12 2.93 6.67 -38.93 -0.26 2.67 16 11 C -0.24 -5.42 9.14 -39.35 -0.36 -5.78 16 12 C 0.09 1.80 7.29 -39.43 -0.29 1.51 16 13 F -0.16 -3.09 17.26 2.25 0.04 -3.05 16 14 C -0.20 -3.51 10.02 -39.49 -0.40 -3.91 16 15 C -0.14 -2.53 9.31 -39.41 -0.37 -2.90 16 16 C 0.15 3.09 6.67 -83.52 -0.56 2.53 16 17 N -0.74 -13.85 5.72 -59.63 -0.34 -14.19 16 18 C 0.21 3.08 5.50 -5.19 -0.03 3.05 16 19 C 0.00 0.04 6.70 -82.10 -0.55 -0.51 16 20 C -0.22 -2.44 11.12 -39.38 -0.44 -2.88 16 21 C -0.06 -0.62 12.30 29.74 0.37 -0.25 16 22 O 0.10 1.37 11.20 17.19 0.19 1.57 16 23 N -0.35 -5.43 12.07 33.42 0.40 -5.03 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.14 3.14 5.64 -52.49 -0.30 2.85 16 26 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.12 1.72 6.73 -52.49 -0.35 1.36 16 28 H 0.41 8.68 7.83 -40.82 -0.32 8.36 16 29 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 30 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.22 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -31.27 293.29 -4.70 -35.97 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.47 Total: 9.44 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.68 Total: -15.84 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.82 Total: -43.19 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: 0.19 Total: -3.24 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.27 -4.70 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760465289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.182 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds