Wall clock time and date at job start Tue Mar 31 2020 00:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86799 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47193 * 240.00044 * 3 2 1 5 5 H 1.48501 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47261 * 119.99656 * 3 2 1 7 7 C 1.38625 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00290 * 179.97438 * 7 2 1 9 9 O 1.34806 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.35789 * 117.00236 * 185.06433 * 9 7 2 11 11 C 1.38732 * 120.08501 * 354.39746 * 10 9 7 12 12 C 1.38359 * 119.97740 * 179.97438 * 11 10 9 13 13 F 1.35101 * 119.91827 * 180.02562 * 12 11 10 14 14 C 1.38529 * 120.15915 * 0.02562 * 12 11 10 15 15 C 1.38207 * 120.17940 * 0.02562 * 14 12 11 16 16 C 1.38720 * 120.01459 * 0.23006 * 15 14 12 17 17 N 1.39925 * 120.07752 * 179.74295 * 16 15 14 18 18 C 1.46502 * 120.00021 * 359.97438 * 17 16 15 19 19 C 1.50706 * 109.47064 * 180.02562 * 18 17 16 20 20 C 1.41377 * 126.80444 * 94.99755 * 19 18 17 21 21 C 1.35447 * 103.98639 * 179.97438 * 20 19 18 22 22 O 1.34034 * 106.44640 * 0.02562 * 21 20 19 23 23 N 1.20924 * 111.57036 * 359.70890 * 22 21 20 24 24 H 0.97000 * 120.00127 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00897 * 0.02562 * 11 10 9 26 26 H 1.08003 * 119.90995 * 180.02562 * 14 12 11 27 27 H 1.08001 * 119.99575 * 179.97438 * 15 14 12 28 28 H 0.97005 * 120.00206 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.47520 * 300.00029 * 18 17 16 30 30 H 1.09004 * 109.46979 * 60.00199 * 18 17 16 31 31 H 1.08001 * 128.00508 * 0.04536 * 20 19 18 32 32 H 1.08001 * 126.77729 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0704 -3.5044 0.1079 11 6 3.4562 -3.4399 0.0942 12 6 4.2033 -4.5992 0.2043 13 9 5.5527 -4.5349 0.1914 14 6 3.5711 -5.8256 0.3277 15 6 2.1910 -5.8976 0.3409 16 6 1.4346 -4.7404 0.2257 17 7 0.0372 -4.8123 0.2336 18 6 -0.6287 -6.1107 0.3630 19 6 -2.1227 -5.9132 0.3435 20 6 -2.9754 -6.0113 -0.7799 21 6 -4.2070 -5.7512 -0.2797 22 8 -4.0440 -5.5244 1.0312 23 7 -2.8843 -5.6237 1.3588 24 1 -0.4850 0.8400 0.0004 25 1 3.9515 -2.4850 -0.0014 26 1 4.1583 -6.7280 0.4137 27 1 1.7011 -6.8553 0.4368 28 1 -0.4906 -4.0024 0.1526 29 1 -0.3367 -6.7533 -0.4676 30 1 -0.3358 -6.5772 1.3037 31 1 -2.7070 -6.2415 -1.8004 32 1 -5.1366 -5.7299 -0.8290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760465289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:14 Heat of formation + Delta-G solvation = 3.194680 kcal Electronic energy + Delta-G solvation = -20539.535224 eV Core-core repulsion = 16997.336104 eV Total energy + Delta-G solvation = -3542.199120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.64961 -45.95478 -40.91388 -38.44962 -36.83877 -34.54866 -34.26384 -32.63034 -30.95126 -30.15708 -27.39953 -27.08336 -24.17791 -23.65528 -22.76278 -21.89655 -20.03101 -19.44026 -18.78213 -18.59914 -17.70237 -17.31911 -16.94677 -16.49338 -16.11105 -15.93550 -15.61531 -15.44438 -15.18875 -14.96536 -14.75979 -14.07442 -13.81926 -13.67046 -13.40406 -13.21333 -12.97768 -12.56657 -12.26559 -12.23052 -12.07277 -11.57074 -11.23675 -10.82426 -10.78044 -10.58482 -9.45568 -8.48569 -8.09605 -6.11787 0.46490 0.58523 0.59693 1.15677 1.33638 1.43046 1.48351 2.15013 2.44871 2.69958 2.75584 3.08448 3.13506 3.32660 3.60812 3.64226 3.99833 4.18766 4.24604 4.34991 4.48797 4.49429 4.62096 4.74425 4.85469 5.00108 5.08442 5.13020 5.30641 5.41746 5.44779 5.93487 6.01686 6.45605 6.65915 6.96787 7.31682 7.73407 8.73196 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.006052 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.134091 B = 4625.080428 C = 6794.332086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.410 4.410 8 H 0.095 0.905 9 O -0.218 6.218 10 C 0.081 3.919 11 C -0.246 4.246 12 C 0.068 3.932 13 F -0.154 7.154 14 C -0.163 4.163 15 C -0.132 4.132 16 C 0.151 3.849 17 N -0.745 5.745 18 C 0.211 3.789 19 C -0.018 4.018 20 C -0.230 4.230 21 C -0.045 4.045 22 O 0.094 5.906 23 N -0.390 5.390 24 H 0.272 0.728 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.394 0.606 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.197 0.803 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -13.550 -2.785 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.112 0.888 9 O -0.125 6.125 10 C 0.028 3.972 11 C -0.267 4.267 12 C 0.047 3.953 13 F -0.133 7.133 14 C -0.183 4.183 15 C -0.155 4.155 16 C 0.049 3.951 17 N -0.378 5.378 18 C 0.087 3.913 19 C -0.176 4.176 20 C -0.252 4.252 21 C -0.126 4.126 22 O 0.026 5.974 23 N -0.093 5.093 24 H 0.081 0.919 25 H 0.141 0.859 26 H 0.178 0.822 27 H 0.184 0.816 28 H 0.227 0.773 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.214 0.786 32 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -5.007 -13.371 -1.470 14.353 hybrid contribution 0.508 1.387 -0.829 1.694 sum -4.499 -11.984 -2.299 13.006 Atomic orbital electron populations 1.70152 1.07642 1.28707 1.48685 1.26410 0.96827 1.02256 0.95979 0.84740 0.77498 0.74863 0.79748 1.18309 1.19446 1.18673 1.21649 0.92272 0.81530 1.53181 0.88811 1.83865 1.34699 1.11849 1.82042 1.19083 0.90170 0.87574 1.00372 1.20852 0.93433 0.98845 1.13620 1.17345 0.76085 0.94523 1.07341 1.91386 1.29857 1.97392 1.94687 1.20817 0.94713 0.95950 1.06784 1.20431 0.92478 0.96313 1.06280 1.17387 0.84257 0.91045 1.02460 1.44418 1.02057 1.08314 1.82992 1.19573 0.82565 0.85767 1.03354 1.23879 0.98830 1.04329 0.90539 1.23138 0.91952 1.08357 1.01766 1.26957 1.02856 0.99658 0.83123 1.84799 1.21307 1.64753 1.26555 1.73907 0.90955 1.18667 1.25772 0.91922 0.85944 0.82218 0.81635 0.77254 0.87483 0.90664 0.78604 0.71822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.02 13.67 21.61 0.30 -54.72 16 2 C -0.02 -0.94 5.49 84.82 0.47 -0.47 16 3 Si 1.01 43.33 29.55 68.60 2.03 45.36 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.41 -23.81 9.49 67.91 0.64 -23.17 16 8 H 0.09 5.14 5.21 -2.91 -0.02 5.12 16 9 O -0.22 -12.63 9.00 -22.93 -0.21 -12.84 16 10 C 0.08 3.95 6.67 22.69 0.15 4.10 16 11 C -0.25 -11.31 9.14 22.42 0.20 -11.11 16 12 C 0.07 2.66 7.29 22.37 0.16 2.82 16 13 F -0.15 -5.82 17.26 44.97 0.78 -5.04 16 14 C -0.16 -5.18 10.02 22.33 0.22 -4.96 16 15 C -0.13 -4.13 9.31 22.38 0.21 -3.92 16 16 C 0.15 6.03 6.67 38.27 0.26 6.28 16 17 N -0.74 -27.72 5.72 -342.56 -1.96 -29.68 16 18 C 0.21 5.71 5.50 85.63 0.47 6.18 16 19 C -0.02 -0.49 6.70 43.58 0.29 -0.20 16 20 C -0.23 -4.65 11.12 22.40 0.25 -4.40 16 21 C -0.05 -0.76 12.30 67.17 0.83 0.07 16 22 O 0.09 2.40 11.20 71.68 0.80 3.20 16 23 N -0.39 -12.16 12.07 -49.56 -0.60 -12.76 16 24 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.12 5.87 5.64 -2.91 -0.02 5.85 16 26 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 27 H 0.17 3.75 6.73 -2.91 -0.02 3.73 16 28 H 0.39 17.37 7.83 -92.70 -0.73 16.65 16 29 H 0.11 2.21 7.95 -2.39 -0.02 2.19 16 30 H 0.08 1.94 7.95 -2.38 -0.02 1.92 16 31 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.27 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -73.39 293.29 5.76 -67.64 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.46 Total: 27.62 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 4.16 Total: -28.77 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -2.26 Total: -97.17 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.60 Total: -9.63 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.78 Total: -5.04 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -73.39 5.76 -67.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760465289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.832 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds